BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4810.p (338 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775931.1| nitrate/sulfonate/bicarbonate ABC transporte... 624 e-177 ref|YP_001524866.1| substrate-binding transmembrane protein [Azo... 402 e-110 ref|YP_001242493.1| putative ABC transporter periplasmic substra... 395 e-108 ref|YP_001203541.1| putative ABC transporter periplasmic substra... 394 e-108 ref|YP_002495408.1| putative periplasmic substrate-binding trans... 389 e-106 >ref|YP_003775931.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64023.1| ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 341 Score = 624 bits (1609), Expect = e-177, Method: Composition-based stats. Identities = 320/336 (95%), Positives = 326/336 (97%) Query: 3 RRTFASLMMASALALSAVSGTARAEAQEVRISHGYGLLYLPLMVIRDQNLVEKHAKAMGL 62 RRTF SLM+ASALALS VSGTA AEAQEVRISHGYGLLYLPLMVIRDQNLVEKHAKAMGL Sbjct: 6 RRTFTSLMIASALALSGVSGTAHAEAQEVRISHGYGLLYLPLMVIRDQNLVEKHAKAMGL 65 Query: 63 GEVKTKWVLLDGGNVINDAMLAGNLDIAGTGAPGFITLWSKAHGIPRSEVVGLGALSTSP 122 GEVKTKWVLLDGGNVINDAMLAGNLDIAGTGAPGF+TLWSKAHGIPRSEVVGLGALSTSP Sbjct: 66 GEVKTKWVLLDGGNVINDAMLAGNLDIAGTGAPGFVTLWSKAHGIPRSEVVGLGALSTSP 125 Query: 123 LWLNTNNPNVKSLKDFTPKDKIAIPGIKTSLSAVLLQMAVAKTFGIENYAKLDPLTVSLS 182 LWLNTNNPNVKSLKDFTPKDKIAIPGIKTSLSAVLLQMA AKTFGIENYAKLDPLTVSLS Sbjct: 126 LWLNTNNPNVKSLKDFTPKDKIAIPGIKTSLSAVLLQMAAAKTFGIENYAKLDPLTVSLS 185 Query: 183 HPEALGSLLSGKTEITAHFTSPPFSYQEVKDPKIRRVLNSTDVLGHITIDVVFALKSFTD 242 HPEA+ SL+SGKTEITAHFTSPPFSYQE K P I RVLNSTDVLGHITIDVVFALKSFTD Sbjct: 186 HPEAMASLVSGKTEITAHFTSPPFSYQEAKAPGITRVLNSTDVLGHITIDVVFALKSFTD 245 Query: 243 KNPKLTQAFMAAQEEANAYIAKNRKGAAEIFLRVSKLKLPQDEVEQMLADPGTEFTSTPV 302 KNPKLTQAFMAAQEEANAYIAKNRKGAAEIFLRVSKLKLPQ+EVEQMLADPGTEFTSTPV Sbjct: 246 KNPKLTQAFMAAQEEANAYIAKNRKGAAEIFLRVSKLKLPQEEVEQMLADPGTEFTSTPV 305 Query: 303 DIMQYVIFMGKAGTIKTKPAVWHEMFVPAFKERKGS 338 DIMQYV+FM KAGTIKTKPAVWHEMFVPAFKERKGS Sbjct: 306 DIMQYVVFMSKAGTIKTKPAVWHEMFVPAFKERKGS 341 >ref|YP_001524866.1| substrate-binding transmembrane protein [Azorhizobium caulinodans ORS 571] dbj|BAF87948.1| putative periplasmic substrate-binding transmembrane protein [Azorhizobium caulinodans ORS 571] Length = 338 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 198/312 (63%), Positives = 244/312 (78%) Query: 27 EAQEVRISHGYGLLYLPLMVIRDQNLVEKHAKAMGLGEVKTKWVLLDGGNVINDAMLAGN 86 E +EVRIS GYG+LYLPL+V+ DQ L+EK A+ GLG +K W++LDGGNVINDAM+AG+ Sbjct: 27 EVKEVRISKGYGILYLPLIVMEDQKLLEKQAEKAGLGPLKVTWLMLDGGNVINDAMMAGS 86 Query: 87 LDIAGTGAPGFITLWSKAHGIPRSEVVGLGALSTSPLWLNTNNPNVKSLKDFTPKDKIAI 146 LD AGTGAPGFITLW+KA GIP EVVG+ LS + LW+NTN+PN+ SLKDF DKIA+ Sbjct: 87 LDFAGTGAPGFITLWAKAKGIPNVEVVGISGLSATALWMNTNSPNINSLKDFKAGDKIAL 146 Query: 147 PGIKTSLSAVLLQMAVAKTFGIENYAKLDPLTVSLSHPEALGSLLSGKTEITAHFTSPPF 206 PGIKTSLSAV+LQM A FG ENYAKLDPLTVSL HPEAL +L+ GKTEI AHFTSPPF Sbjct: 147 PGIKTSLSAVVLQMMAAHEFGRENYAKLDPLTVSLPHPEALAALVGGKTEINAHFTSPPF 206 Query: 207 SYQEVKDPKIRRVLNSTDVLGHITIDVVFALKSFTDKNPKLTQAFMAAQEEANAYIAKNR 266 SY E+KDPK+ RV NS DV+G IT+DV FA K F D NPK+TQAF+ A +EA+A+IA N+ Sbjct: 207 SYLELKDPKVHRVANSVDVIGPITLDVTFAPKKFVDANPKVTQAFLDALDEADAFIAANK 266 Query: 267 KGAAEIFLRVSKLKLPQDEVEQMLADPGTEFTSTPVDIMQYVIFMGKAGTIKTKPAVWHE 326 + AAEI++R +K+K +E+ +ML D T F++TP IMQ+ FM AG+IK KP W + Sbjct: 267 QAAAEIYVRNAKVKTSVEEILEMLNDKDTRFSTTPDGIMQFADFMHAAGSIKVKPKAWSD 326 Query: 327 MFVPAFKERKGS 338 +F+P RKGS Sbjct: 327 LFIPQLASRKGS 338 >ref|YP_001242493.1| putative ABC transporter periplasmic substrate-binding subunit [Bradyrhizobium sp. BTAi1] gb|ABQ38587.1| putative periplasmic substrate-binding subunit (ABC transporter) [Bradyrhizobium sp. BTAi1] Length = 338 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 197/318 (61%), Positives = 244/318 (76%) Query: 21 SGTARAEAQEVRISHGYGLLYLPLMVIRDQNLVEKHAKAMGLGEVKTKWVLLDGGNVIND 80 +G + AE +EVR+S GYG+LYLPL+V+ DQ L+EKHA+ GLG K W LLDGGN+IND Sbjct: 21 TGASLAEVKEVRLSKGYGILYLPLIVMEDQKLMEKHAEKAGLGPFKVSWQLLDGGNIIND 80 Query: 81 AMLAGNLDIAGTGAPGFITLWSKAHGIPRSEVVGLGALSTSPLWLNTNNPNVKSLKDFTP 140 AM+AG+LDIAGTGAPGFITLW+KA GIP EVVG+ LS++ LW+NTNNP +KSLKDF Sbjct: 81 AMMAGSLDIAGTGAPGFITLWAKAKGIPAVEVVGVSGLSSTSLWMNTNNPEIKSLKDFKA 140 Query: 141 KDKIAIPGIKTSLSAVLLQMAVAKTFGIENYAKLDPLTVSLSHPEALGSLLSGKTEITAH 200 DKIA+PGIKTSLSAV+LQM A FG ENYAKLDP+TV L HPEA+ +L+SGKTEITAH Sbjct: 141 GDKIALPGIKTSLSAVMLQMMAAHEFGKENYAKLDPMTVGLPHPEAVAALISGKTEITAH 200 Query: 201 FTSPPFSYQEVKDPKIRRVLNSTDVLGHITIDVVFALKSFTDKNPKLTQAFMAAQEEANA 260 FTSPPFSY E+KD KI RV NS DVLG +T+DVVFA K F D NPK+ QAF+ A +EA Sbjct: 201 FTSPPFSYIELKDSKIHRVANSADVLGRLTMDVVFAPKRFVDANPKVVQAFLDALDEACT 260 Query: 261 YIAKNRKGAAEIFLRVSKLKLPQDEVEQMLADPGTEFTSTPVDIMQYVIFMGKAGTIKTK 320 IA ++ AAEI+ R +K+K ++EV +ML D T F++TP +++ FM G+IK K Sbjct: 261 LIANDKAAAAEIYARTAKVKTTKEEVLEMLQDKDTWFSATPEGVLKIAEFMHGVGSIKVK 320 Query: 321 PAVWHEMFVPAFKERKGS 338 PA W +MFV ++R GS Sbjct: 321 PANWQDMFVTQLRDRNGS 338 >ref|YP_001203541.1| putative ABC transporter periplasmic substrate-binding subunit [Bradyrhizobium sp. ORS 278] emb|CAL75304.1| putative periplasmic substrate-binding subunit (ABC transporter) [Bradyrhizobium sp. ORS 278] Length = 337 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 196/316 (62%), Positives = 244/316 (77%) Query: 23 TARAEAQEVRISHGYGLLYLPLMVIRDQNLVEKHAKAMGLGEVKTKWVLLDGGNVINDAM 82 +A+AE +E+R+S GYG+LYLPL+V+ DQ L+EK A+ GLG K W LLDGGN+INDAM Sbjct: 22 SAQAEVKEIRLSKGYGILYLPLIVMEDQKLMEKQAEKAGLGPFKVSWQLLDGGNIINDAM 81 Query: 83 LAGNLDIAGTGAPGFITLWSKAHGIPRSEVVGLGALSTSPLWLNTNNPNVKSLKDFTPKD 142 +AG+LDIAGTGAPGFITLW+KA GIP EVVG+ LS++ LW+N+NNP +KSLKDF P D Sbjct: 82 MAGSLDIAGTGAPGFITLWAKAKGIPAVEVVGVSGLSSTSLWMNSNNPEIKSLKDFKPSD 141 Query: 143 KIAIPGIKTSLSAVLLQMAVAKTFGIENYAKLDPLTVSLSHPEALGSLLSGKTEITAHFT 202 KIA+PGIKTSLSAV+LQM A FG ENYAKLDP+TV L HPEA+ +L SGKTEITAHFT Sbjct: 142 KIALPGIKTSLSAVILQMMAAHEFGKENYAKLDPMTVGLPHPEAVAALTSGKTEITAHFT 201 Query: 203 SPPFSYQEVKDPKIRRVLNSTDVLGHITIDVVFALKSFTDKNPKLTQAFMAAQEEANAYI 262 SPPFSY E+KD KI RV NS DVLG +T+DVVFA K F D NPK+ QAF+ A +EA I Sbjct: 202 SPPFSYIELKDSKIHRVANSADVLGRLTMDVVFAPKRFVDANPKVVQAFLDALDEACTLI 261 Query: 263 AKNRKGAAEIFLRVSKLKLPQDEVEQMLADPGTEFTSTPVDIMQYVIFMGKAGTIKTKPA 322 A ++ AAEI+ R +K+K ++EV +ML D T F++TP +++ FM G+IK KPA Sbjct: 262 ANDKAAAAEIYARTAKVKTTKEEVLEMLQDKDTWFSATPEGVLKIAEFMHGVGSIKVKPA 321 Query: 323 VWHEMFVPAFKERKGS 338 W +MFV ++RKGS Sbjct: 322 SWQDMFVTQLRDRKGS 337 >ref|YP_002495408.1| putative periplasmic substrate-binding transmembrane protein [Methylobacterium nodulans ORS 2060] gb|ACL55105.1| putative periplasmic substrate-binding transmembrane protein [Methylobacterium nodulans ORS 2060] Length = 338 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 194/314 (61%), Positives = 241/314 (76%) Query: 25 RAEAQEVRISHGYGLLYLPLMVIRDQNLVEKHAKAMGLGEVKTKWVLLDGGNVINDAMLA 84 RAE EVRIS GYG+LYLPL V++++ +E A GLG+VK W+ LDGGNVINDAM+A Sbjct: 25 RAEVSEVRISKGYGILYLPLFVMQEKKFLEAQAAKAGLGDVKVTWLTLDGGNVINDAMIA 84 Query: 85 GNLDIAGTGAPGFITLWSKAHGIPRSEVVGLGALSTSPLWLNTNNPNVKSLKDFTPKDKI 144 G+LDIAGTGAPGF+ LWSK G P++EV+G+ +ST+ L LN N +KSL DFTPKDKI Sbjct: 85 GSLDIAGTGAPGFLALWSKGRGSPKTEVIGVSGMSTTALDLNVNKAEIKSLADFTPKDKI 144 Query: 145 AIPGIKTSLSAVLLQMAVAKTFGIENYAKLDPLTVSLSHPEALGSLLSGKTEITAHFTSP 204 AIPGIKTSL+AV+LQMAVAK FG ENY KLD TV L HPEA+ +LLSGKTEI AHF SP Sbjct: 145 AIPGIKTSLAAVVLQMAVAKQFGPENYGKLDASTVGLPHPEAVAALLSGKTEIVAHFASP 204 Query: 205 PFSYQEVKDPKIRRVLNSTDVLGHITIDVVFALKSFTDKNPKLTQAFMAAQEEANAYIAK 264 PF+ E DPKIR +L +++V G IT+DVVFALK FT+ NPKLTQAF+ A ++ANA+I + Sbjct: 205 PFTQVERADPKIRTILKASEVFGPITLDVVFALKRFTEANPKLTQAFLDALDQANAFIQE 264 Query: 265 NRKGAAEIFLRVSKLKLPQDEVEQMLADPGTEFTSTPVDIMQYVIFMGKAGTIKTKPAVW 324 N+ AEIF R SK+K+ +EV ML DP + F+STP IM++ FM + G IKTKPA W Sbjct: 265 NKAETAEIFARASKVKVTPEEVRPMLDDPDSRFSSTPTGIMEFATFMHRVGIIKTKPAAW 324 Query: 325 HEMFVPAFKERKGS 338 ++F+PA +ER GS Sbjct: 325 TDLFIPALRERAGS 338