BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4808.p (289 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775932.1| nitrate/sulfonate/bicarbonate ABC transporte... 489 e-136 ref|YP_001242494.1| putative ABC transporter [Bradyrhizobium sp.... 369 e-100 ref|YP_001767077.1| binding-protein-dependent transport systems ... 367 1e-99 ref|YP_002495409.1| binding-protein-dependent transport systems ... 365 4e-99 ref|YP_001757022.1| binding-protein-dependent transport systems ... 356 2e-96 >ref|YP_003775932.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64024.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 289 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 284/289 (98%), Positives = 285/289 (98%) Query: 1 MQTNLPFVRPEILVDPNPDASAEVQRPLSAFESLYRMGWLRKTVILLVLALTWEVYGRWL 60 M TNLPFVRPEILVDPNP A+AEVQRPLSAFESLYRMGWLRKTVILLVLA WEVYGRWL Sbjct: 1 MHTNLPFVRPEILVDPNPHATAEVQRPLSAFESLYRMGWLRKTVILLVLAAIWEVYGRWL 60 Query: 61 DNALLFPSFSETVQAFLSGIGSGVLLQRAAVSMQTLLVGYGLGILLAGLLTTVAISSRIG 120 DNALLFPSFSETVQAFLSGIGSGVLLQRAAVSMQTLLVGYGLGILLAGLLTTVAISSRIG Sbjct: 61 DNALLFPSFSETVQAFLSGIGSGVLLQRAAVSMQTLLVGYGLGILLAGLLTTVAISSRIG 120 Query: 121 NDLLETLTSMFNPLPAIALLPLALIWFGLGTGSIIFVLVHSVLWAVALNTHGGFRAVSNT 180 NDLLETLTSMFNPLPAIALLPLALIWFGLGTGSIIFVLVHSVLWAVALNTHGGFRAVSNT Sbjct: 121 NDLLETLTSMFNPLPAIALLPLALIWFGLGTGSIIFVLVHSVLWAVALNTHGGFRAVSNT 180 Query: 181 LRMVGQNYGLRRFSLVKSILIPAAFPSILTGLKVGWAFAWRTLIAAELVFGVSSGAGGLG 240 LRMVGQNYGLRRFSLVKSILIPAAFPSILTGLKVGWAFAWRTLIAAELVFGVSSGAGGLG Sbjct: 181 LRMVGQNYGLRRFSLVKSILIPAAFPSILTGLKVGWAFAWRTLIAAELVFGVSSGAGGLG 240 Query: 241 WYIFENRNQLETANVFSGLFFVIIIGLVVENLIFAQIEKRTIRRWGMQH 289 WYIFENRNQLETANVFSGLFFVIIIGLVVENLIFAQIEKRTIRRWGMQH Sbjct: 241 WYIFENRNQLETANVFSGLFFVIIIGLVVENLIFAQIEKRTIRRWGMQH 289 >ref|YP_001242494.1| putative ABC transporter [Bradyrhizobium sp. BTAi1] gb|ABQ38588.1| putative ABC transporter [Bradyrhizobium sp. BTAi1] Length = 288 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 201/282 (71%), Positives = 234/282 (82%) Query: 8 VRPEILVDPNPDASAEVQRPLSAFESLYRMGWLRKTVILLVLALTWEVYGRWLDNALLFP 67 +RPEI+ P +V+ LS E +Y + +RK VIL+ LA W+ YG WL N LLFP Sbjct: 7 LRPEIVNAETPLGDVKVEASLSIIERIYHVAGVRKAVILVALAALWQAYGLWLGNPLLFP 66 Query: 68 SFSETVQAFLSGIGSGVLLQRAAVSMQTLLVGYGLGILLAGLLTTVAISSRIGNDLLETL 127 +F++T+ AF I +GV+ R VS++TLL+GYG+GI LA +LTT+AI SRIG D+LE L Sbjct: 67 TFTDTLSAFFENIANGVIPARTLVSLETLLIGYGIGIALAAVLTTIAIGSRIGADMLEAL 126 Query: 128 TSMFNPLPAIALLPLALIWFGLGTGSIIFVLVHSVLWAVALNTHGGFRAVSNTLRMVGQN 187 TSMFNPLPAIALLPLALIWFGLG GSIIFVLVHSVLWA+ALNTH GFR+VSNTLRMVG N Sbjct: 127 TSMFNPLPAIALLPLALIWFGLGKGSIIFVLVHSVLWAIALNTHSGFRSVSNTLRMVGLN 186 Query: 188 YGLRRFSLVKSILIPAAFPSILTGLKVGWAFAWRTLIAAELVFGVSSGAGGLGWYIFENR 247 YGLR LV+ ILIPAAFP+ILTGLKVGWAFAWRTLIAAELVFGVSSGAGGLGW+IFENR Sbjct: 187 YGLRGLKLVRFILIPAAFPAILTGLKVGWAFAWRTLIAAELVFGVSSGAGGLGWFIFENR 246 Query: 248 NQLETANVFSGLFFVIIIGLVVENLIFAQIEKRTIRRWGMQH 289 NQLETANVF+GLF VI IGLVVEN++FA IE++T+RRWGMQH Sbjct: 247 NQLETANVFAGLFTVIFIGLVVENVVFATIERKTVRRWGMQH 288 >ref|YP_001767077.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium sp. 4-46] gb|ACA14643.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium sp. 4-46] Length = 292 Score = 367 bits (942), Expect = 1e-99, Method: Composition-based stats. Identities = 210/281 (74%), Positives = 241/281 (85%) Query: 9 RPEILVDPNPDASAEVQRPLSAFESLYRMGWLRKTVILLVLALTWEVYGRWLDNALLFPS 68 RP+I+ + + + V++ LS E LYR GWLRK V+L LA+ WEVYGRWLDN LLFP+ Sbjct: 12 RPDIVRETSASGAVAVEQRLSLPELLYRQGWLRKCVVLAALAILWEVYGRWLDNPLLFPT 71 Query: 69 FSETVQAFLSGIGSGVLLQRAAVSMQTLLVGYGLGILLAGLLTTVAISSRIGNDLLETLT 128 F TV+AF S I SG + ++A +S++TL +GYG+GI LA LLTT+AI SRIG DLLETLT Sbjct: 72 FGATVEAFGSAILSGEIPRKALISLETLAIGYGIGIGLAALLTTIAIGSRIGTDLLETLT 131 Query: 129 SMFNPLPAIALLPLALIWFGLGTGSIIFVLVHSVLWAVALNTHGGFRAVSNTLRMVGQNY 188 +MFNPLPAIALLPLALIWFGLG GS++FVLVHSVLWA+ALNTH GFR+VSNTLRMVG NY Sbjct: 132 AMFNPLPAIALLPLALIWFGLGQGSVVFVLVHSVLWAIALNTHAGFRSVSNTLRMVGLNY 191 Query: 189 GLRRFSLVKSILIPAAFPSILTGLKVGWAFAWRTLIAAELVFGVSSGAGGLGWYIFENRN 248 GLR SLV++ILIPAAFPSILTGLKVGWAFAWRTLIAAELVFGVSSG+GGLGWYIFENRN Sbjct: 192 GLRNLSLVRAILIPAAFPSILTGLKVGWAFAWRTLIAAELVFGVSSGSGGLGWYIFENRN 251 Query: 249 QLETANVFSGLFFVIIIGLVVENLIFAQIEKRTIRRWGMQH 289 LET NVF+GLF VI+IGL VEN+IFA IEKRTIRRWGMQH Sbjct: 252 ALETTNVFAGLFTVILIGLFVENVIFANIEKRTIRRWGMQH 292 >ref|YP_002495409.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium nodulans ORS 2060] gb|ACL55106.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium nodulans ORS 2060] Length = 292 Score = 365 bits (937), Expect = 4e-99, Method: Composition-based stats. Identities = 209/281 (74%), Positives = 239/281 (85%) Query: 9 RPEILVDPNPDASAEVQRPLSAFESLYRMGWLRKTVILLVLALTWEVYGRWLDNALLFPS 68 RPEIL + + + V++ LS E LYR GWLRK +L LA+ WEVYGRWLDN LLFP+ Sbjct: 12 RPEILRETSAAGAITVEQRLSLPELLYRQGWLRKCAVLATLAVLWEVYGRWLDNPLLFPT 71 Query: 69 FSETVQAFLSGIGSGVLLQRAAVSMQTLLVGYGLGILLAGLLTTVAISSRIGNDLLETLT 128 FS TV+AF + I SG + +A +S+QTL +GYG+GI LA +LTT+AI SRIG DLLETLT Sbjct: 72 FSATVEAFGTAILSGEIPAKALISLQTLAIGYGIGIALAAILTTIAIGSRIGTDLLETLT 131 Query: 129 SMFNPLPAIALLPLALIWFGLGTGSIIFVLVHSVLWAVALNTHGGFRAVSNTLRMVGQNY 188 +MFNPLPAIALLPLALIWFGLG GS++FVLVHSVLWA+ALNTH GFR+VSNTLRMVG NY Sbjct: 132 AMFNPLPAIALLPLALIWFGLGQGSVVFVLVHSVLWAIALNTHAGFRSVSNTLRMVGLNY 191 Query: 189 GLRRFSLVKSILIPAAFPSILTGLKVGWAFAWRTLIAAELVFGVSSGAGGLGWYIFENRN 248 GLR LV++ILIPAAFPSILTGLKVGWAFAWRTLIAAELVFGVSSG+GGLGWYIFENRN Sbjct: 192 GLRNLRLVRAILIPAAFPSILTGLKVGWAFAWRTLIAAELVFGVSSGSGGLGWYIFENRN 251 Query: 249 QLETANVFSGLFFVIIIGLVVENLIFAQIEKRTIRRWGMQH 289 LET NVF+GLF VI+IGL VEN++FA IEKRTIRRWGMQH Sbjct: 252 ALETTNVFAGLFTVILIGLFVENVVFANIEKRTIRRWGMQH 292 >ref|YP_001757022.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium radiotolerans JCM 2831] gb|ACB26339.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium radiotolerans JCM 2831] Length = 308 Score = 356 bits (914), Expect = 2e-96, Method: Composition-based stats. Identities = 198/284 (69%), Positives = 229/284 (80%), Gaps = 1/284 (0%) Query: 6 PFVRPEILVDP-NPDASAEVQRPLSAFESLYRMGWLRKTVILLVLALTWEVYGRWLDNAL 64 P RPEI+ + + + V++PLS E LY WLRK VIL++LA WE YGR+LDN L Sbjct: 24 PSGRPEIVRETGHAHGATVVEKPLSVAERLYNQAWLRKVVILVLLAGIWEAYGRYLDNDL 83 Query: 65 LFPSFSETVQAFLSGIGSGVLLQRAAVSMQTLLVGYGLGILLAGLLTTVAISSRIGNDLL 124 LFP+FS TV+AF+ GI G L RA S++ LL+GY G+ LA LLT VAI+SRIG DLL Sbjct: 84 LFPTFSATVEAFVRGIADGTLPARAWSSLKVLLMGYAAGVALATLLTGVAIASRIGTDLL 143 Query: 125 ETLTSMFNPLPAIALLPLALIWFGLGTGSIIFVLVHSVLWAVALNTHGGFRAVSNTLRMV 184 ETLTSMFNPLPAIALLPLALIWFGLG GS+IFVLVHSV WA+ALNTH GF +VS TL+MV Sbjct: 144 ETLTSMFNPLPAIALLPLALIWFGLGNGSLIFVLVHSVTWAIALNTHSGFLSVSRTLKMV 203 Query: 185 GQNYGLRRFSLVKSILIPAAFPSILTGLKVGWAFAWRTLIAAELVFGVSSGAGGLGWYIF 244 G+NYGL L+ ILIPAAFPSILTGLKVGWAFAWRTLIAAELVFGVSSGAGGLGW+IF Sbjct: 204 GRNYGLSGPRLIGKILIPAAFPSILTGLKVGWAFAWRTLIAAELVFGVSSGAGGLGWFIF 263 Query: 245 ENRNQLETANVFSGLFFVIIIGLVVENLIFAQIEKRTIRRWGMQ 288 EN+N L+ NVF+GL VI+IGLVVENLIF IE+RT++RWGMQ Sbjct: 264 ENKNMLDIPNVFAGLLTVILIGLVVENLIFQTIERRTVQRWGMQ 307