BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4805.p (209 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775934.1| response regulator transcription regulator p... 328 2e-88 ref|YP_002495411.1| winged helix family two component transcript... 208 3e-52 ref|YP_373281.1| two component transcriptional regulator [Burkho... 204 7e-51 gb|EGD02019.1| two component transcriptional regulator [Burkhold... 203 1e-50 ref|YP_002912035.1| winged helix family two component transcript... 203 2e-50 >ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64026.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 174/194 (89%), Positives = 181/194 (93%) Query: 12 LGEAFDLLILDVMLPQTDGFSLLEQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLV 71 L E++DLLILDVMLPQ DGFSLL+QLR RG HTPVLMLTAC E+EERVRALDLGADDYLV Sbjct: 40 LSESYDLLILDVMLPQQDGFSLLQQLRTRGHHTPVLMLTACAEVEERVRALDLGADDYLV 99 Query: 72 KPFDFRELDARIRVLLRRSGGESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEI 131 KPFDFRELDARIRVLLRRSGGESTNLLHCANL IDRKSR+ATLDGQPIELTRREVTLLEI Sbjct: 100 KPFDFRELDARIRVLLRRSGGESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEI 159 Query: 132 IAARPGRIFNKDELMDRLFTVDDTPNANTVEQYVARLRKKLAAAAFEIRTLRGLGYQLVL 191 IAARPGRIFNKDELMDRLFTVDD P+AN+VEQYVARLRKKLAAAAFEIRTLRGLGYQLVL Sbjct: 160 IAARPGRIFNKDELMDRLFTVDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQLVL 219 Query: 192 HAPAAGEASASTPA 205 HAPA A A T A Sbjct: 220 HAPAEPGAGAGTAA 233 >ref|YP_002495411.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gb|ACL55108.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 225 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 113/183 (61%), Positives = 145/183 (79%), Gaps = 2/183 (1%) Query: 14 EAFDLLILDVMLPQTDGFSLLEQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKP 73 + +DL+ILDV LP DGF++L+++RAR TPVL+LTA E+++RV ALDLGADDYLVKP Sbjct: 43 QPYDLVILDVNLPGLDGFAILKRMRARRGRTPVLVLTARSEVDDRVGALDLGADDYLVKP 102 Query: 74 FDFRELDARIRVLLRRSGGESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIA 133 FDFREL+AR+R LLRR G + N + C NL +DR +R+A++ GQP++LTRRE TL+EI+A Sbjct: 103 FDFRELEARVRALLRRHSGHADNAIACGNLSLDRAARSASVGGQPLDLTRREWTLIEILA 162 Query: 134 ARPGRIFNKDELMDRLFTVDDTPNANTVEQYVARLRKKLAAAAF--EIRTLRGLGYQLVL 191 ARPGRIF K EL+DRL T ++ P+ N +EQ VARLR+KLA A EIRTLRGLGYQ+V Sbjct: 163 ARPGRIFGKAELLDRLSTFEEEPSENALEQIVARLRRKLAQAGAEPEIRTLRGLGYQVVC 222 Query: 192 HAP 194 P Sbjct: 223 PEP 225 >ref|YP_373281.1| two component transcriptional regulator [Burkholderia sp. 383] gb|ABB12637.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 221 Score = 204 bits (519), Expect = 7e-51, Method: Composition-based stats. Identities = 104/179 (58%), Positives = 135/179 (75%) Query: 14 EAFDLLILDVMLPQTDGFSLLEQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKP 73 E FDL++LD LP DGF++L LRA G TPVL++TA I++RV L LGADDYLVKP Sbjct: 43 ERFDLVVLDANLPGMDGFTVLRHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKP 102 Query: 74 FDFRELDARIRVLLRRSGGESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIA 133 FD+RELDAR++ LLRR+ G + ++L L IDR SR A LDGQP+ L+R+E LLEI+A Sbjct: 103 FDYRELDARVQALLRRNSGHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILA 162 Query: 134 ARPGRIFNKDELMDRLFTVDDTPNANTVEQYVARLRKKLAAAAFEIRTLRGLGYQLVLH 192 +RP RIF+KDEL+++LF+ + P AN VEQYV R+RKKL ++ EIRT RG+GYQ+ H Sbjct: 163 SRPQRIFSKDELLNQLFSFGNEPTANAVEQYVTRVRKKLQGSSVEIRTARGMGYQIAAH 221 >gb|EGD02019.1| two component transcriptional regulator [Burkholderia sp. TJI49] Length = 221 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 104/176 (59%), Positives = 137/176 (77%) Query: 14 EAFDLLILDVMLPQTDGFSLLEQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKP 73 E FDL++LDVMLP DGF++L LRA G TPVL+LTA I++RV L LGADDYLVKP Sbjct: 43 ERFDLVVLDVMLPGLDGFAVLRNLRASGSTTPVLLLTARSAIDDRVSGLGLGADDYLVKP 102 Query: 74 FDFRELDARIRVLLRRSGGESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIA 133 FD+RELDAR++ LLRR+ G + ++L L IDR SR A LDGQP+ L+R+E LLEI+A Sbjct: 103 FDYRELDARVQALLRRNSGHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILA 162 Query: 134 ARPGRIFNKDELMDRLFTVDDTPNANTVEQYVARLRKKLAAAAFEIRTLRGLGYQL 189 +RP RIF+K+EL+++LF+ + P AN VEQYV R+R+KL+ ++ EIRT RG+GYQ+ Sbjct: 163 SRPQRIFSKEELLNQLFSFGNEPTANAVEQYVTRVRRKLSGSSVEIRTARGMGYQI 218 >ref|YP_002912035.1| winged helix family two component transcriptional regulator [Burkholderia glumae BGR1] gb|ACR29331.1| Two component transcriptional regulator, winged helix family [Burkholderia glumae BGR1] Length = 221 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 104/176 (59%), Positives = 139/176 (78%) Query: 14 EAFDLLILDVMLPQTDGFSLLEQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKP 73 E+FDL++LDVMLP DGFS+L +LRA G TPVL++TA I++RV L LGADDYLVKP Sbjct: 43 ESFDLVVLDVMLPSLDGFSVLRRLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKP 102 Query: 74 FDFRELDARIRVLLRRSGGESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIA 133 FD+RELDAR++ LLRR+ G ++++L +L IDR SR A LDGQP+ L+R+E LLEI+A Sbjct: 103 FDYRELDARVQALLRRNSGHASDVLRFGSLSIDRSSRLAELDGQPLPLSRQEFALLEILA 162 Query: 134 ARPGRIFNKDELMDRLFTVDDTPNANTVEQYVARLRKKLAAAAFEIRTLRGLGYQL 189 +RP R+F+KDEL+++LF+ P+AN VEQYV R+R+KL + EIRT RG+GYQ+ Sbjct: 163 SRPQRVFSKDELLNQLFSFGREPSANAVEQYVTRVRRKLQGSDVEIRTARGMGYQI 218