BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4804.p (392 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775935.1| transmembrane sensor histidine kinase transc... 642 0.0 ref|YP_002495412.1| histidine kinase [Methylobacterium nodulans ... 259 4e-67 ref|YP_001767080.1| integral membrane sensor signal transduction... 242 1e-61 ref|YP_001242497.1| putative two-component system histidine kina... 220 3e-55 ref|YP_002912034.1| Periplasmic sensor signal transduction histi... 218 1e-54 >ref|YP_003775935.1| transmembrane sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64027.1| transmembrane sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 468 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 339/374 (90%), Positives = 356/374 (95%) Query: 1 MLGRSPHVVAGRSLYTRLVVRVGAVLLVSAAVLLIAIWISTQLAARQAYDRILAGSALQI 60 M GR+ HV+AGRSLYTRLV+RVGAVLLVSAA LLIAIWISTQ AAR+AYDRILAGSALQI Sbjct: 1 MQGRTQHVIAGRSLYTRLVIRVGAVLLVSAAALLIAIWISTQFAAREAYDRILAGSALQI 60 Query: 61 AENTWYDHGEVNVDVPLAALSMLGTGDHAIYAVFDPRGRVIAGDAEFRPEIPWNELEQGP 120 AENTWYDHGEVNVDVPLAALSMLGTGDHAIYAVFDPRGRVIAGDAEFRPEIPW ELEQGP Sbjct: 61 AENTWYDHGEVNVDVPLAALSMLGTGDHAIYAVFDPRGRVIAGDAEFRPEIPWQELEQGP 120 Query: 121 LLRDGDYLGTPVRMAIIGRRMPVDSAHPWAVIVLAQTNNARMSFAQSLGGKALVVIVAMS 180 LLRDG YLGTPVRMAIIGRRMPV+ HPWAVIVLAQTNNARMSFAQSLG +ALVVIVAMS Sbjct: 121 LLRDGQYLGTPVRMAIIGRRMPVEGPHPWAVIVLAQTNNARMSFAQSLGSRALVVIVAMS 180 Query: 181 ALTILAAMFTLYQALAPLKRIEAAIRERDLNDLSPLSLTVPAETHALVSAINAFMERLVV 240 LT++AAMFTLYQALAPLKRIEAAIRERDLNDLSPL LTVPAETHALVSAINAFM+RL V Sbjct: 181 VLTLVAAMFTLYQALAPLKRIEAAIRERDLNDLSPLVLTVPAETHALVSAINAFMQRLAV 240 Query: 241 HRATMRRVIGDAAHQLRTPVTALVAQMELLATEPSEEKRQRHLALLRERTRHLGALVNQL 300 HR+TMRRVIGDAAHQLRTPVTALVAQMELLATE +EEKRQRHL LLRERTR+LGALVNQL Sbjct: 241 HRSTMRRVIGDAAHQLRTPVTALVAQMELLATEDNEEKRQRHLTLLRERTRNLGALVNQL 300 Query: 301 INHAMVQHRNDSRLQERIDLADLVRSQMTEVLSNRARTPHDLALDVPPLPCLIQGDPIAL 360 INHAMVQHRNDS LQ RIDL +LVRSQMTEVLSNR+RTPHDL+LDVPPLPCLI+GD I+L Sbjct: 301 INHAMVQHRNDSSLQARIDLGELVRSQMTEVLSNRSRTPHDLSLDVPPLPCLIRGDAISL 360 Query: 361 GEAIKNILDNALQY 374 GEAIKNILDNALQY Sbjct: 361 GEAIKNILDNALQY 374 >ref|YP_002495412.1| histidine kinase [Methylobacterium nodulans ORS 2060] gb|ACL55109.1| histidine kinase [Methylobacterium nodulans ORS 2060] Length = 461 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 162/376 (43%), Positives = 217/376 (57%), Gaps = 8/376 (2%) Query: 1 MLGRSPHVVAGRSLYTRLVVRVGAVLLVSAAVLLIAIWISTQLAARQAYDRILAGSALQI 60 M+GR+P SL+ RLV +G VL V AA+LL A W S +LAA QAYDR+L G+ALQI Sbjct: 1 MIGRTP------SLFLRLVTVLGLVLAVGAALLLGAAWTSARLAADQAYDRLLVGAALQI 54 Query: 61 AENTWYDHGEVNVDVPLAALSMLGTG--DHAIYAVFDPRGRVIAGDAEFRPEIPWNELEQ 118 AE D E+ VD P +A LG D Y V DP ++ G + + L Sbjct: 55 AETIASDGREITVDPPFSAFETLGLAPRDRIFYKVVDPSDGLLTGSPDLAVPVDRARLGD 114 Query: 119 GPLLRDGDYLGTPVRMAIIGRRMPVDSAHPWAVIVLAQTNNARMSFAQSLGGKALVVIVA 178 GPLL D + G PVR+ + GR +P WA +V+AQT AR A L KA ++++ Sbjct: 115 GPLLLDATHRGEPVRVVVAGRYVPDIPKAGWAAVVVAQTREARNGLAGDLTAKASLLVLT 174 Query: 179 MSALTILAAMFTLYQALAPLKRIEAAIRERDLNDLSPLSLTVPAETHALVSAINAFMERL 238 MSAL + A + AL PL +E + R NDL PL L VP E H LV++IN FM+RL Sbjct: 175 MSALALGAVTVAVRAALRPLAALERVLAGRGPNDLDPLDLAVPREIHLLVTSINHFMDRL 234 Query: 239 VVHRATMRRVIGDAAHQLRTPVTALVAQMELLATEPSEEKRQRHLALLRERTRHLGALVN 298 H A MRR I DAAHQ+RTP+ AL AQ++LL+ E E +R+ + ++ERT LG L N Sbjct: 235 SGHMAIMRRFIADAAHQIRTPLAALGAQVDLLSAEGDEARRREQVIRVQERTAELGRLTN 294 Query: 299 QLINHAMVQHRNDSRLQERIDLADLVRSQMTEVLSNRARTPHDLALDVPPLPCLIQGDPI 358 QL+NHAMV HR S +DL + R + + + P D + P P I+GDPI Sbjct: 295 QLLNHAMVIHRARSIPLAPVDLGAIARRTLIDAIPLAGTRPIDFGYEGPDEPLPIRGDPI 354 Query: 359 ALGEAIKNILDNALQY 374 AL EA+ N++ N +++ Sbjct: 355 ALREALANLIHNGIKH 370 >ref|YP_001767080.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] gb|ACA14646.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] Length = 462 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 163/376 (43%), Positives = 225/376 (59%), Gaps = 8/376 (2%) Query: 1 MLGRSPHVVAGRSLYTRLVVRVGAVLLVSAAVLLIAIWISTQLAARQAYDRILAGSALQI 60 M+ R+P SL+ RLV +G VL V AA+LL A W S +LAA +AYDR+L G+ALQI Sbjct: 1 MIARTP------SLFLRLVGVLGLVLAVGAALLLAAAWTSARLAADEAYDRLLVGAALQI 54 Query: 61 AENTWYDHGEVNVDVPLAALSMLGTG--DHAIYAVFDPRGRVIAGDAEFRPEIPWNELEQ 118 AE D EV+VD P +A LG D Y V DP R++ G+A+ + L + Sbjct: 55 AETIASDGREVSVDPPFSAFETLGLAPRDRIFYKVLDPSDRLLTGNADLAVTVDRGRLGE 114 Query: 119 GPLLRDGDYLGTPVRMAIIGRRMPVDSAHPWAVIVLAQTNNARMSFAQSLGGKALVVIVA 178 GP+L DG + G PVR+ + GR +P + +A +V+AQT AR + A L KA +++VA Sbjct: 115 GPILLDGTHRGEPVRVVVAGRYVPDAARAGFAAVVVAQTREARSALAAELTAKASLLVVA 174 Query: 179 MSALTILAAMFTLYQALAPLKRIEAAIRERDLNDLSPLSLTVPAETHALVSAINAFMERL 238 MSAL + A + + AL PL IE + R NDL PL + VP E H LV +IN FM RL Sbjct: 175 MSALALGAVIVAVRAALRPLAAIEGVLAGRGPNDLDPLDVAVPREIHLLVGSINHFMGRL 234 Query: 239 VVHRATMRRVIGDAAHQLRTPVTALVAQMELLATEPSEEKRQRHLALLRERTRHLGALVN 298 H A MRR I DAAHQ+RTP+ AL AQ++LL+ E ++R+ ++ ++ RT LG L N Sbjct: 235 SGHMAIMRRFIADAAHQIRTPLAALSAQVDLLSAEDDPKRRRAQVSRVQARTAELGRLTN 294 Query: 299 QLINHAMVQHRNDSRLQERIDLADLVRSQMTEVLSNRARTPHDLALDVPPLPCLIQGDPI 358 QL+NHAMV HR + +DLA + R + + + D+ D P I+GDPI Sbjct: 295 QLLNHAMVIHRARAVPLAPVDLAGIARQTLIDAIPLSGGRLVDIGYDGPDEALPIRGDPI 354 Query: 359 ALGEAIKNILDNALQY 374 AL EA+ N++ NAL++ Sbjct: 355 ALREALANLIHNALKH 370 >ref|YP_001242497.1| putative two-component system histidine kinase [Bradyrhizobium sp. BTAi1] gb|ABQ38591.1| putative Two-component system histidine kinase [Bradyrhizobium sp. BTAi1] Length = 462 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 156/369 (42%), Positives = 206/369 (55%), Gaps = 11/369 (2%) Query: 13 SLYTRLVVRVGAVLLVSAAVLLIAIWISTQLAARQAYDRILAGSALQIAENTWYDHGEVN 72 SL RL++ +GA+L V A VL +A W AAR AYDR+LAG A+QIAEN + G V Sbjct: 13 SLRARLLIAIGAILTVGAIVLSLAAWQYAATAARDAYDRLLAGGAVQIAENIYMQGGVVT 72 Query: 73 VDVPLAALSMLGTGDHAIYAVFDPRGRVIAGDAEFRPEIPWNELEQGPLLRDGDYLGTPV 132 +D P AA + L D Y V DPRG V+AG + P L +G +LRDG Y PV Sbjct: 73 LDPPAAAFATLSAYDLVFYRVTDPRGVVVAGYDDLAISAPAAALREGVVLRDGVYRDQPV 132 Query: 133 RMAIIGRRMPVDSAHPWAVIVLAQTNNARMSFAQSLGGKALVVIVAMSALTILAAMFTLY 192 R+A + RR+ W+ IVLAQT AR S L KA+ +I AMS L ++A L Sbjct: 133 RIAAVARRLDGAPGDGWSAIVLAQTLRARDSLTWDLASKAIGLIAAMSLLALVATALCLR 192 Query: 193 QALAPLKRIEAAIRERDLNDLSPLSLTVPAETHALVSAINAFMERLVVHRATMRRVIGDA 252 APL RIEA I R +DLSP+++T P E ALV AI+ FM+RL M+R I DA Sbjct: 193 LVFAPLTRIEAEIVRRRPDDLSPIAMTPPREVRALVGAIDGFMQRLSERITLMQRFIADA 252 Query: 253 AHQLRTPVTALVAQMELLATEPSEEKRQRHLALLRERTRHLGALVNQLINHAMVQHRNDS 312 HQLRTP+ A+ A++ELL + + K L LR R L L +QL++HAM+QHR + Sbjct: 253 THQLRTPLAAIDAEVELLTDQTRDPKA---LDKLRGRIADLARLASQLLDHAMIQHRAQA 309 Query: 313 RLQERIDLADLVRSQMTEVLSNRARTPHDLALDVPPLP----CLIQGDPIALGEAIKNIL 368 D+ L +S VLS D + V +P +I D I+L EA+ N++ Sbjct: 310 PRFAATDINALAKS----VLSQSVPLSLDREVSVSFVPSEGDTVIAADAISLREALANLI 365 Query: 369 DNALQYPRR 377 NAL + R Sbjct: 366 HNALAHGAR 374 >ref|YP_002912034.1| Periplasmic sensor signal transduction histidine kinase [Burkholderia glumae BGR1] gb|ACR29330.1| Periplasmic sensor signal transduction histidine kinase [Burkholderia glumae BGR1] Length = 468 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 132/363 (36%), Positives = 202/363 (55%) Query: 12 RSLYTRLVVRVGAVLLVSAAVLLIAIWISTQLAARQAYDRILAGSALQIAENTWYDHGEV 71 ++L+ R ++ + V++ A L + LAA +AYD++L+G+ +Q+AEN + G + Sbjct: 9 KTLFGRTLLFIACVVVSGALALAVITRFYAGLAAERAYDQLLSGAVIQVAENLYVQGGVL 68 Query: 72 NVDVPLAALSMLGTGDHAIYAVFDPRGRVIAGDAEFRPEIPWNELEQGPLLRDGDYLGTP 131 ++ P+AALS L D Y V D RG V+AG + P G G Y P Sbjct: 69 ALNPPVAALSSLSRYDLVYYKVVDSRGVVVAGYHDLPDAAPVGAARGGTRFATGTYQQQP 128 Query: 132 VRMAIIGRRMPVDSAHPWAVIVLAQTNNARMSFAQSLGGKALVVIVAMSALTILAAMFTL 191 VR+A I R MP + WA++ +AQT +AR + K +IV M+AL I A+ + Sbjct: 129 VRIATIARYMPEERVPGWALVTVAQTTHAREQLTDDMSLKVWTLIVLMAALAIGASALAI 188 Query: 192 YQALAPLKRIEAAIRERDLNDLSPLSLTVPAETHALVSAINAFMERLVVHRATMRRVIGD 251 + L PL +IEA I R+ +DL P+++ P+E A++ AIN M RL ATM+R I D Sbjct: 189 RRGLLPLAQIEAIIAAREPSDLRPVAIDTPSEIAAIIGAINGLMRRLAERVATMQRFIAD 248 Query: 252 AAHQLRTPVTALVAQMELLATEPSEEKRQRHLALLRERTRHLGALVNQLINHAMVQHRND 311 AAHQ+RTP+ L AQ+E+L+ EP +++ LA LR +G L QL+NHAMV HR + Sbjct: 249 AAHQMRTPLARLDAQIEMLSHEPDAARQRARLATLRATCSDVGRLTGQLLNHAMVIHRTE 308 Query: 312 SRLQERIDLADLVRSQMTEVLSNRARTPHDLALDVPPLPCLIQGDPIALGEAIKNILDNA 371 + +DL L + + + ++L++ I GDPI+L EA++N+L NA Sbjct: 309 VVPLQPVDLVALAKEGLGRAIPLAHERDVQVSLEIGRADATIDGDPISLQEALQNLLHNA 368 Query: 372 LQY 374 L + Sbjct: 369 LHH 371