BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4801.p (390 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775936.1| methylase of polypeptide chain release facto... 632 e-179 ref|YP_003606354.1| methyltransferase small [Burkholderia sp. CC... 483 e-134 ref|YP_003908377.1| methyltransferase small [Burkholderia sp. CC... 482 e-134 ref|ZP_02886927.1| methyltransferase small [Burkholderia gramini... 481 e-134 ref|YP_001893188.1| methyltransferase small [Ralstonia pickettii... 481 e-133 >ref|YP_003775936.1| methylase of polypeptide chain release factors protein [Herbaspirillum seropedicae SmR1] gb|ADJ64028.1| methylase of polypeptide chain release factors protein [Herbaspirillum seropedicae SmR1] Length = 395 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 336/395 (85%), Positives = 358/395 (90%), Gaps = 5/395 (1%) Query: 1 MTIHDDIPAFITWTTAPTSQQLRWHSEAGNPPPKRVVEADDQMAADAAYKLACEGTGLLW 60 MT HDD A++TW T T QQLRWHSEAGNPPPKRV EADDQ+AAD AYKLACEG GLLW Sbjct: 1 MTPHDDSLAWLTWQTGSTQQQLRWHSEAGNPPPKRVQEADDQIAADTAYKLACEGCGLLW 60 Query: 61 RGDFQNARQLLQALGRRVDRARERAQAKSKSK-----AAAAESPAQAFHHHRQMQAQRAR 115 RGDFQNARQLLQALGRR+D+ARERA AK+K K AA A + AQAFH HRQMQAQRAR Sbjct: 61 RGDFQNARQLLQALGRRIDKARERALAKAKDKPAAGVAAGAGAAAQAFHQHRQMQAQRAR 120 Query: 116 ILGMLLIPVDPGFVVPLRRAPDVQAACREAYAPSLQDTSFAVSLRELQGLFGAHEWRKKG 175 ILGMLLIPV+PGFVVPLRRAPDVQAACREAY P L DT+FAVSLRELQGL GAHEWRKKG Sbjct: 121 ILGMLLIPVEPGFVVPLRRAPDVQAACREAYGPELADTAFAVSLRELQGLIGAHEWRKKG 180 Query: 176 VEIGALGSRIHPWYGVFSPVRGEYVDLVAKAPLPSTELAFDIGVGSGVLSAVLARRGVRK 235 VEIGALG+RIHPWYGVFSPVRGEYVDLVA+A LPSTELAFDIGVGSGVLSAVLA+RGVRK Sbjct: 181 VEIGALGARIHPWYGVFSPVRGEYVDLVAQAALPSTELAFDIGVGSGVLSAVLAQRGVRK 240 Query: 236 IIATDMDPRALDCARENLQGLGVLPQVELQEADLFPAGRAPLIVCNPPWLPARPSSPIEH 295 I+ATDMDPRAL CAR+NLQ LG+ QV+LQEADLFP GRAPL+VCNPPWLPARPSSPIEH Sbjct: 241 IVATDMDPRALACARQNLQQLGLHQQVQLQEADLFPEGRAPLVVCNPPWLPARPSSPIEH 300 Query: 296 AVYDPDSRMLLGFLKGLPDHLTPQGEGWLILSDFAEHLGLRAPGMLAEAIAQAGLEVVAR 355 AVYDPDSRMLLGFL GL HLTPQGEGWLI+SDFAEHLGLRAPGMLAEAIA+AGL V R Sbjct: 301 AVYDPDSRMLLGFLNGLAQHLTPQGEGWLIMSDFAEHLGLRAPGMLAEAIAKAGLVVAGR 360 Query: 356 HDIKPRHGKAVDRDDPLHAARSKETTSLYRLRARA 390 HDIKPRHGKAVDRDDPLHAARSKETT+L+RLRA+A Sbjct: 361 HDIKPRHGKAVDRDDPLHAARSKETTTLWRLRAQA 395 >ref|YP_003606354.1| methyltransferase small [Burkholderia sp. CCGE1002] gb|ADG16843.1| methyltransferase small [Burkholderia sp. CCGE1002] Length = 374 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 257/382 (67%), Positives = 295/382 (77%), Gaps = 11/382 (2%) Query: 8 PAFITWTTAPTSQQLRWHSEAGNPPPKRVVEADDQMAADAAYKLACEGTGLLWRGDFQNA 67 PA +TW A + RW SEA PPPKRVV ADD+ AD+AY+LACEGT LLW GDFQNA Sbjct: 4 PATLTWPEADGPRTARWRSEAAVPPPKRVVVADDRTTADSAYRLACEGTALLWHGDFQNA 63 Query: 68 RQLLQALGRRVDRARERAQAKSKSKAAAAESPAQAFHHHRQMQAQRARILGMLLIPVDPG 127 RQLLQA+ RR++R + A +P AFH HRQ Q+QRAR LGM+LIP+D Sbjct: 64 RQLLQAVTRRLERKPRKHGA----------TPLDAFHLHRQAQSQRARTLGMILIPLDAD 113 Query: 128 FVVPLRRAPDVQAACREAYAPSLQDTSFAVSLRELQGLFGAHEWRKKGVEIGALGSRIHP 187 + +PLRRAPDV+ AC EAY P+ D S VSLREL GL GAHEWRKKGVEI ALG RIHP Sbjct: 114 YGIPLRRAPDVRQACIEAYGPATGDAS-VVSLRELLGLIGAHEWRKKGVEIAALGERIHP 172 Query: 188 WYGVFSPVRGEYVDLVAKAPLPSTELAFDIGVGSGVLSAVLARRGVRKIIATDMDPRALD 247 YGVFSPVRGEYVDLVA+ LPS ELAFDIG G+GVL+A+LA+RGVRKI+ATD D RAL Sbjct: 173 HYGVFSPVRGEYVDLVARTALPSLELAFDIGTGTGVLAALLAKRGVRKIVATDQDARALA 232 Query: 248 CARENLQGLGVLPQVELQEADLFPAGRAPLIVCNPPWLPARPSSPIEHAVYDPDSRMLLG 307 CARENL LG QVE+ +ADLFP GRAPL+VCNPPW+PARP+SP+E+AVYDPDSRMLLG Sbjct: 233 CARENLARLGYAGQVEVVQADLFPDGRAPLVVCNPPWVPARPASPLEYAVYDPDSRMLLG 292 Query: 308 FLKGLPDHLTPQGEGWLILSDFAEHLGLRAPGMLAEAIAQAGLEVVARHDIKPRHGKAVD 367 FL GL DHLTP GEGWLI+SDFAEHLGLR L AI AGL VV R DI+PRH KA D Sbjct: 293 FLNGLADHLTPDGEGWLIISDFAEHLGLRTREWLLAAIGHAGLTVVGREDIRPRHPKASD 352 Query: 368 RDDPLHAARSKETTSLYRLRAR 389 ++DPL+ AR+ E TSL+RL+ R Sbjct: 353 QNDPLYVARAAEITSLWRLKVR 374 >ref|YP_003908377.1| methyltransferase small [Burkholderia sp. CCGE1003] gb|ADN59086.1| methyltransferase small [Burkholderia sp. CCGE1003] Length = 375 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 252/383 (65%), Positives = 294/383 (76%), Gaps = 11/383 (2%) Query: 8 PAFITWTTAPTSQQLRWHSEAGNPPPKRVVEADDQMAADAAYKLACEGTGLLWRGDFQNA 67 PA ITW A + RW SEA PPPKRV+ ADD+ AD+AY+LACEGT LLW GDFQNA Sbjct: 4 PASITWPEADGPRTARWRSEAAVPPPKRVIVADDRTTADSAYRLACEGTALLWNGDFQNA 63 Query: 68 RQLLQALGRRVDRARERAQAKSKSKAAAAESPAQAFHHHRQMQAQRARILGMLLIPVDPG 127 RQLLQA+ RR++R + + A +P +AF+ HRQ Q+QRAR LGM+LIP+D G Sbjct: 64 RQLLQAVTRRLERKQRKQGA----------TPLEAFNLHRQTQSQRARTLGMILIPLDAG 113 Query: 128 FVVPLRRAPDVQAACREAYAPSLQDTSFAVSLRELQGLFGAHEWRKKGVEIGALGSRIHP 187 + +PLRRAPDV+ AC E Y P + S VSLREL GL GAHEWRKKGVEI ALG RIHP Sbjct: 114 YAIPLRRAPDVREACMETYGPPTGEAS-VVSLRELLGLIGAHEWRKKGVEIPALGERIHP 172 Query: 188 WYGVFSPVRGEYVDLVAKAPLPSTELAFDIGVGSGVLSAVLARRGVRKIIATDMDPRALD 247 YGVFSPVRGEYVDLVA+ PLPS AFD+G G+GVL+A+LA+RGV+KI+ATD DPRAL Sbjct: 173 HYGVFSPVRGEYVDLVARTPLPSLNKAFDVGTGTGVLAALLAKRGVKKIVATDQDPRALA 232 Query: 248 CARENLQGLGVLPQVELQEADLFPAGRAPLIVCNPPWLPARPSSPIEHAVYDPDSRMLLG 307 CARENL LG QV++ +ADLFP GRAPL+VCNPPW+PARP+SPIEHAV+DPDSRMLLG Sbjct: 233 CARENLARLGYGQQVDVVQADLFPEGRAPLVVCNPPWVPARPASPIEHAVFDPDSRMLLG 292 Query: 308 FLKGLPDHLTPQGEGWLILSDFAEHLGLRAPGMLAEAIAQAGLEVVARHDIKPRHGKAVD 367 FL GL DHL+P GEGWLILSDFAEHLGLR L AI +AGL V R DI+PRH K+ D Sbjct: 293 FLNGLADHLSPGGEGWLILSDFAEHLGLRTREWLLAAIEKAGLTVAGREDIRPRHPKSTD 352 Query: 368 RDDPLHAARSKETTSLYRLRARA 390 DPLH AR E TSL+RL+ R+ Sbjct: 353 ESDPLHKARVAELTSLWRLKVRS 375 >ref|ZP_02886927.1| methyltransferase small [Burkholderia graminis C4D1M] gb|EDT07576.1| methyltransferase small [Burkholderia graminis C4D1M] Length = 375 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 255/383 (66%), Positives = 297/383 (77%), Gaps = 11/383 (2%) Query: 8 PAFITWTTAPTSQQLRWHSEAGNPPPKRVVEADDQMAADAAYKLACEGTGLLWRGDFQNA 67 PA ITW A + RW SEA PPPKRV+ ADD+ AD+AY+LACEGT LLW GDFQNA Sbjct: 4 PASITWPEADGPRTARWRSEAAVPPPKRVIVADDRTTADSAYRLACEGTALLWNGDFQNA 63 Query: 68 RQLLQALGRRVDRARERAQAKSKSKAAAAESPAQAFHHHRQMQAQRARILGMLLIPVDPG 127 RQLLQA+ RR++R + R Q E+P AF+ HRQ Q+QRAR LGM+LIP++ Sbjct: 64 RQLLQAVTRRLER-KPRKQG---------ETPLDAFNLHRQTQSQRARTLGMILIPLNAE 113 Query: 128 FVVPLRRAPDVQAACREAYAPSLQDTSFAVSLRELQGLFGAHEWRKKGVEIGALGSRIHP 187 + +PLRRAPDV+ AC E Y P + S VSLREL G+ GAHEWRKKGVEI ALG RIHP Sbjct: 114 YAIPLRRAPDVRQACIETYGPPTDEAS-VVSLRELLGMIGAHEWRKKGVEIPALGDRIHP 172 Query: 188 WYGVFSPVRGEYVDLVAKAPLPSTELAFDIGVGSGVLSAVLARRGVRKIIATDMDPRALD 247 YGVFSPVRGEYVDLVA+ PLPS AFD+G G+GVL+A+LA+RGV+KI+ATD DPRAL Sbjct: 173 HYGVFSPVRGEYVDLVARTPLPSLNKAFDVGTGTGVLAALLAKRGVKKIVATDQDPRALA 232 Query: 248 CARENLQGLGVLPQVELQEADLFPAGRAPLIVCNPPWLPARPSSPIEHAVYDPDSRMLLG 307 CARENL LG QV++ +ADLFP GRAPL+VCNPPW+PARP+SPIE+AVYDPDSRMLLG Sbjct: 233 CARENLARLGYEQQVDVVQADLFPEGRAPLVVCNPPWVPARPASPIEYAVYDPDSRMLLG 292 Query: 308 FLKGLPDHLTPQGEGWLILSDFAEHLGLRAPGMLAEAIAQAGLEVVARHDIKPRHGKAVD 367 FLKGL +HL+P GEGWLILSDFAEHLGLR L AIA AGL VVAR DI+PRH K+ D Sbjct: 293 FLKGLSEHLSPGGEGWLILSDFAEHLGLRTRDWLLAAIADAGLTVVAREDIRPRHPKSTD 352 Query: 368 RDDPLHAARSKETTSLYRLRARA 390 DPLH AR+ E TSL+RL+AR Sbjct: 353 ESDPLHKARAAEMTSLWRLKARG 375 >ref|YP_001893188.1| methyltransferase small [Ralstonia pickettii 12J] ref|YP_002983531.1| methyltransferase small [Ralstonia pickettii 12D] gb|ACD29761.1| methyltransferase small [Ralstonia pickettii 12J] gb|ACS64859.1| methyltransferase small [Ralstonia pickettii 12D] Length = 380 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 264/377 (70%), Positives = 290/377 (76%), Gaps = 13/377 (3%) Query: 14 TTAPTSQQLRWHSEAGNPPPKRVVEADDQMAADAAYKLACEGTGLLWRGDFQNARQLLQA 73 T A T W SEAGN PPKRVV ADD+ AAD AY+LACEGT LLW GDFQNARQLLQA Sbjct: 16 TDAETHHTALWRSEAGNSPPKRVVIADDRTAADTAYRLACEGTALLWHGDFQNARQLLQA 75 Query: 74 LGRRVDRARERAQAKSKSKAAAAESPAQAFHHHRQMQAQRARILGMLLIPVDPGFVVPLR 133 + RR DR + AES AF+ HRQ Q+QRAR LGMLLIP+D + VPLR Sbjct: 76 MSRRADRKPRKT----------AESAIDAFNLHRQAQSQRARTLGMLLIPLDADYTVPLR 125 Query: 134 RAPDVQAACREAYAPSLQDTSFAVSLRELQGLFGAHEWRKKGVEIGALGS-RIHPWYGVF 192 RAPDV+AACREAY PS D + VSLREL GL GAHEWRKKGVEI ALG RIHP YGVF Sbjct: 126 RAPDVRAACREAYGPS--DAASVVSLRELLGLIGAHEWRKKGVEIPALGGGRIHPHYGVF 183 Query: 193 SPVRGEYVDLVAKAPLPSTELAFDIGVGSGVLSAVLARRGVRKIIATDMDPRALDCAREN 252 SPVRGEY+DLVA APLPST LAFDIG G+GVL+AVLA+RGV+ I+ATD DPRAL CAR+N Sbjct: 184 SPVRGEYIDLVANAPLPSTALAFDIGTGTGVLAAVLAKRGVKHIVATDQDPRALACARDN 243 Query: 253 LQGLGVLPQVELQEADLFPAGRAPLIVCNPPWLPARPSSPIEHAVYDPDSRMLLGFLKGL 312 L LG+ QVE+ EADLFP GRAPLIVCNPPWLPARPSSPIE AVYDPD+RML GFL GL Sbjct: 244 LAHLGLQSQVEVIEADLFPEGRAPLIVCNPPWLPARPSSPIERAVYDPDNRMLRGFLDGL 303 Query: 313 PDHLTPQGEGWLILSDFAEHLGLRAPGMLAEAIAQAGLEVVARHDIKPRHGKAVDRDDPL 372 HL P GEGWLILSDFAEHLGLR L I AGL+VV R DIKP+H KA D +DPL Sbjct: 304 AAHLEPAGEGWLILSDFAEHLGLRTRDALMAMIEAAGLQVVGREDIKPKHPKASDPNDPL 363 Query: 373 HAARSKETTSLYRLRAR 389 H AR+ E TSL+RL+AR Sbjct: 364 HQARAAEVTSLWRLKAR 380