BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4795.p (286 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775939.1| pirin-like protein [Herbaspirillum seropedic... 514 e-144 emb|CBJ39110.1| Conserved pirin-related protein [Ralstonia solan... 363 2e-98 ref|NP_518662.1| pirin-like protein [Ralstonia solanacearum GMI1... 361 5e-98 ref|YP_002980414.1| Pirin domain-containing protein [Ralstonia p... 359 2e-97 ref|YP_002004919.1| hypothetical protein RALTA_A0884 [Cupriavidu... 358 5e-97 >ref|YP_003775939.1| pirin-like protein [Herbaspirillum seropedicae SmR1] gb|ADJ64031.1| pirin-like protein [Herbaspirillum seropedicae SmR1] Length = 289 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 265/287 (92%), Positives = 270/287 (94%), Gaps = 1/287 (0%) Query: 1 MSTP-YTRQIERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGF 59 MSTP YTRQIERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGF Sbjct: 3 MSTPLYTRQIERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGF 62 Query: 60 PDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQENGLMSG 119 PDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQENGLMSG Sbjct: 63 PDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQENGLMSG 122 Query: 120 FQLWVNLAGKDKMTDPGYQDIPSAGIPETEPQAGVKVRVLAGTAFGVAGAISRETTEPLY 179 FQLWVNLAGKDKMT+PGYQDIP+AGIPET PQ GV+VRVLAG+AFG GAI R TTEPLY Sbjct: 123 FQLWVNLAGKDKMTEPGYQDIPAAGIPETSPQPGVRVRVLAGSAFGTDGAIRRATTEPLY 182 Query: 180 LDLKLEAGVTLDLPIPATHNAFLYVYEGKLAVGAAGSETRAAEAGRMAVLSNVAGAAGVT 239 LDL LEAG TL LPIPATHNAFLYVYEG LAVGAA ETR AEAGRMAVLSNV G+AGVT Sbjct: 183 LDLALEAGTTLALPIPATHNAFLYVYEGALAVGAADGETRPAEAGRMAVLSNVPGSAGVT 242 Query: 240 VRAEQASRFLLIAGKPLNEPIAQWGPFVMNTREQVEAAIDDFRAGRF 286 VRAEQASRFLLIAGKPLNEPI QWGPFVMNTREQVE AIDDFRAGRF Sbjct: 243 VRAEQASRFLLIAGKPLNEPITQWGPFVMNTREQVEQAIDDFRAGRF 289 >emb|CBJ39110.1| Conserved pirin-related protein [Ralstonia solanacearum CMR15] Length = 290 Score = 363 bits (931), Expect = 2e-98, Method: Composition-based stats. Identities = 183/285 (64%), Positives = 226/285 (79%), Gaps = 5/285 (1%) Query: 7 RQIERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGFPDHPHRG 66 R++ER+V G T DGAGV LTRVLT LQRRLDPFLMLDAF SD+P+DYLAGFPDHPHRG Sbjct: 5 RRVERIVTGSATSDGAGVRLTRVLTQPLQRRLDPFLMLDAFRSDDPNDYLAGFPDHPHRG 64 Query: 67 FETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQENGLMSGFQLWVNL 126 FETVTYM+AGRMRHRDNAG+EGLL+ GG+QWMTAG G+VHSE+PEQE+G+M GFQLW+NL Sbjct: 65 FETVTYMIAGRMRHRDNAGHEGLLQTGGVQWMTAGSGIVHSEMPEQEDGVMEGFQLWLNL 124 Query: 127 AGKDKMTDPGYQDIPSAGIPETEPQAGVKVRVLAGTAFGVAGAISRETTEPLYLDLKLEA 186 +DKMT P Y+DIPSA IPE + GV VRV+AG + GV GA++R+ T+PLYLDL L A Sbjct: 125 PARDKMTTPWYRDIPSAEIPEFTTEGGVAVRVIAGESHGVQGAMTRDATQPLYLDLSLPA 184 Query: 187 GVTLDLPIPATHNAFLYVYEGKLAVGAAGSETRAA----EAGRMAVLSNVAGAAGVTVRA 242 G T P+PA HNAF+YV+ G VG A + A + +MA+L+N G+ GV +RA Sbjct: 185 GATFAQPLPARHNAFVYVFRGSAMVGDAQAPGSAGLQRVDDKQMAILANTEGSDGVVIRA 244 Query: 243 EQA-SRFLLIAGKPLNEPIAQWGPFVMNTREQVEAAIDDFRAGRF 286 A +R LL+AG+PLNEPIAQ+GPFVMNT+E++ A+ DF+AG+F Sbjct: 245 GDAPARVLLVAGQPLNEPIAQYGPFVMNTQEEIFQAVRDFQAGKF 289 >ref|NP_518662.1| pirin-like protein [Ralstonia solanacearum GMI1000] emb|CAD14069.1| probable pirin-like protein [Ralstonia solanacearum GMI1000] Length = 298 Score = 361 bits (927), Expect = 5e-98, Method: Composition-based stats. Identities = 181/287 (63%), Positives = 227/287 (79%), Gaps = 5/287 (1%) Query: 5 YTRQIERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGFPDHPH 64 + R++ER+V G T DGAGV LTRVLT LQRRLDPFLMLDAF SD+P+DYLAGFPDHPH Sbjct: 11 HARRVERVVTGHATSDGAGVRLTRVLTQPLQRRLDPFLMLDAFRSDDPNDYLAGFPDHPH 70 Query: 65 RGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQENGLMSGFQLWV 124 RGFETVTYM+AGRMRHRDNAG+EGLL+ GG+QWMTAG G+VHSE+PEQE+G+M GFQLW+ Sbjct: 71 RGFETVTYMIAGRMRHRDNAGHEGLLQTGGVQWMTAGSGIVHSEMPEQEDGVMEGFQLWL 130 Query: 125 NLAGKDKMTDPGYQDIPSAGIPETEPQAGVKVRVLAGTAFGVAGAISRETTEPLYLDLKL 184 NL +DKMT P Y+DIPSA IP + GV VRV+AG + GV GA++R+ T+PLYLDL L Sbjct: 131 NLPARDKMTTPWYRDIPSAEIPGFTTEGGVAVRVIAGESHGVQGAMTRDATQPLYLDLSL 190 Query: 185 EAGVTLDLPIPATHNAFLYVYEGKLAVGAA----GSETRAAEAGRMAVLSNVAGAAGVTV 240 AG P+PA HNAF+YV+ G VG A G+ + + +MA+L+N G+ GV + Sbjct: 191 PAGTAFAQPLPARHNAFVYVFRGSALVGDAQAPGGAGLQRVDDKQMAILANTEGSDGVVI 250 Query: 241 RAEQA-SRFLLIAGKPLNEPIAQWGPFVMNTREQVEAAIDDFRAGRF 286 RA+ A +R LL+AG+PLNEPIAQ+GPFVMNT+E++ A+ DF+AG+F Sbjct: 251 RADDAPARVLLVAGQPLNEPIAQYGPFVMNTQEEIFQAVRDFQAGKF 297 >ref|YP_002980414.1| Pirin domain-containing protein [Ralstonia pickettii 12D] gb|ACS61742.1| Pirin domain protein [Ralstonia pickettii 12D] Length = 298 Score = 359 bits (922), Expect = 2e-97, Method: Composition-based stats. Identities = 180/285 (63%), Positives = 225/285 (78%), Gaps = 5/285 (1%) Query: 7 RQIERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGFPDHPHRG 66 R +ER++ G PT DGAGV LTRVLT++LQRRLDPFLMLDAF SD+P+DYLAGFPDHPHRG Sbjct: 13 RLVERIITGRPTSDGAGVKLTRVLTNNLQRRLDPFLMLDAFRSDDPNDYLAGFPDHPHRG 72 Query: 67 FETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQENGLMSGFQLWVNL 126 FETVTYM+AGRMRHRD+AG+EGLL+ GG+QWMTAG G+VHSE+PEQE+G+M GFQLW+NL Sbjct: 73 FETVTYMIAGRMRHRDSAGHEGLLQHGGVQWMTAGSGVVHSEMPEQEDGVMEGFQLWLNL 132 Query: 127 AGKDKMTDPGYQDIPSAGIPETEPQAGVKVRVLAGTAFGVAGAISRETTEPLYLDLKLEA 186 +DKMT P Y+DIPS IPE + V VRV+AG + GV GA++RE T+PLYLD+ L A Sbjct: 133 PARDKMTTPWYRDIPSNEIPEFTTEDSVAVRVIAGESHGVQGAMTREATQPLYLDITLPA 192 Query: 187 GVTLDLPIPATHNAFLYVYEGKLAVGAAGSETRAA----EAGRMAVLSNVAGAAGVTVRA 242 G + +PA HNAF+YV+ G VG AG+ A E +MA+L+N G+ GV +RA Sbjct: 193 GTSFAQALPAGHNAFVYVFRGSALVGDAGAPGDAGLQRVEDKQMAILANTEGSDGVVIRA 252 Query: 243 EQA-SRFLLIAGKPLNEPIAQWGPFVMNTREQVEAAIDDFRAGRF 286 A +R LL+AGKPLNE IAQ+GPFVMNT+E++ A+ DF+AG+F Sbjct: 253 GDAEARVLLVAGKPLNESIAQYGPFVMNTQEEIFQAVRDFQAGKF 297 >ref|YP_002004919.1| hypothetical protein RALTA_A0884 [Cupriavidus taiwanensis LMG 19424] emb|CAQ68850.1| conserved hypothetical protein, PIRIN-LIKE PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 308 Score = 358 bits (919), Expect = 5e-97, Method: Composition-based stats. Identities = 182/281 (64%), Positives = 217/281 (77%), Gaps = 1/281 (0%) Query: 6 TRQIERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGFPDHPHR 65 +R ++R+V GI T DGAGV LTRVLT +LQRRLDPFLMLDAF +D DY+ GFPDHPHR Sbjct: 20 SRTVDRVVRGIATSDGAGVKLTRVLTQNLQRRLDPFLMLDAFGTDSKDDYIGGFPDHPHR 79 Query: 66 GFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQENGLMSGFQLWVN 125 GFET+TYMLAGRMRHRD+AGNEGLL+ GG QWM AG G+VHSE+PEQE+G M GFQLW+N Sbjct: 80 GFETITYMLAGRMRHRDSAGNEGLLQNGGAQWMVAGAGVVHSEMPEQEDGRMEGFQLWLN 139 Query: 126 LAGKDKMTDPGYQDIPSAGIPETEPQAGVKVRVLAGTAFGVAGAISRETTEPLYLDLKLE 185 L DKMT P Y+D+P+A IP + G VRVLAG + GVAGAI+R TEP+YLD++L Sbjct: 140 LPAADKMTAPWYRDLPAAEIPTVALEHGATVRVLAGASHGVAGAITRPVTEPVYLDVELP 199 Query: 186 AGVTLDLPIPATHNAFLYVYEGKLAVGAAGSETRAAEAGRMAVLSNVAGAAGVTVRAEQA 245 AG +PA HNAF+YVY G+++VG AG + EA RM VL N A GV VRAE Sbjct: 200 AGQDFAQALPAGHNAFIYVYRGEVSVG-AGDDRAVVEAQRMGVLDNGGQADGVIVRAEAD 258 Query: 246 SRFLLIAGKPLNEPIAQWGPFVMNTREQVEAAIDDFRAGRF 286 +RFLLIAG+PLNEPIAQ+GPFVMNT+EQ+ + DFR GRF Sbjct: 259 ARFLLIAGRPLNEPIAQYGPFVMNTQEQIYQTLADFRDGRF 299