BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4794.p         (131 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775940.1| transmembrane protein [Herbaspirillum serope...   202   1e-50
ref|YP_004754867.1| hypothetical protein CFU_4223 [Collimonas fu...   137   7e-31
ref|YP_003744840.1| hypothetical protein RCFBP_10900 [Ralstonia ...    95   3e-18
emb|CAQ37316.1| conserved hypothetical protein [Ralstonia solana...    95   4e-18
emb|CBJ37085.1| conserved membrane protein of unknown function [...    95   4e-18

>ref|YP_003775940.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64032.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 131

 Score =  202 bits (514), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 121/131 (92%), Positives = 129/131 (98%)

Query: 1   MITNFTTFRIGRVLLASLFVISGIFKIVGFAGTVGYFGSLGLPVPTLAVLVTILVEVGGG 60
           MIT+++T+RIGRVLLASLFVISGIFKI+GFAGTVGYFGSLGLP+PTLAVL TILVEVGGG
Sbjct: 1   MITHYSTYRIGRVLLASLFVISGIFKIIGFAGTVGYFGSLGLPLPTLAVLATILVEVGGG 60

Query: 61  LLLMTGRGVRPVSLVIALFTVGATLSAHHFWTLEGAAAQGQMIHFLKNVALIGALLLVSS 120
           LLLMTGRGVRPVSLVIALFTVGATLSAHHFWTLEGAAAQGQMIHFLKNVALIGALLLVSS
Sbjct: 61  LLLMTGRGVRPVSLVIALFTVGATLSAHHFWTLEGAAAQGQMIHFLKNVALIGALLLVSS 120

Query: 121 IDPQAQPEENR 131
           IDP+AQPE+ R
Sbjct: 121 IDPEAQPEQAR 131


>ref|YP_004754867.1| hypothetical protein CFU_4223 [Collimonas fungivorans Ter331]
 gb|AEK64044.1| putative membrane protein [Collimonas fungivorans Ter331]
          Length = 127

 Score =  137 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 75/121 (61%), Positives = 97/121 (80%)

Query: 6   TTFRIGRVLLASLFVISGIFKIVGFAGTVGYFGSLGLPVPTLAVLVTILVEVGGGLLLMT 65
           T +RIGRVLLASLFVISG+ KI  F+G VGY  SLG+P  T AVL+TILVEVGGGL +MT
Sbjct: 6   TLYRIGRVLLASLFVISGLLKITAFSGVVGYMSSLGIPFATFAVLITILVEVGGGLAIMT 65

Query: 66  GRGVRPVSLVIALFTVGATLSAHHFWTLEGAAAQGQMIHFLKNVALIGALLLVSSIDPQA 125
           G   RP +L++ALFTVGATLSAH FW  + A+ Q Q+ HFLKN+++IGALL+++++D  +
Sbjct: 66  GWNARPAALIVALFTVGATLSAHRFWQADPASMQNQLNHFLKNISIIGALLMLAAVDTDS 125

Query: 126 Q 126
           +
Sbjct: 126 K 126


>ref|YP_003744840.1| hypothetical protein RCFBP_10900 [Ralstonia solanacearum CFBP2957]
 emb|CBJ42203.1| conserved membrane protein of unknown function [Ralstonia
           solanacearum CFBP2957]
          Length = 136

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/110 (45%), Positives = 78/110 (70%)

Query: 10  IGRVLLASLFVISGIFKIVGFAGTVGYFGSLGLPVPTLAVLVTILVEVGGGLLLMTGRGV 69
           + RVL+  LF+ISG  K+ GFAGTVGY G++G P+P LA ++ +++E G G+ L+ G   
Sbjct: 15  LARVLMMLLFLISGWGKVTGFAGTVGYMGTVGAPMPMLAAIIAVIMEFGVGIALLIGFWT 74

Query: 70  RPVSLVIALFTVGATLSAHHFWTLEGAAAQGQMIHFLKNVALIGALLLVS 119
           RP++L++ALF +G  L AH +W +EGA     M+ F KN++++G L+L+S
Sbjct: 75  RPLALLMALFVLGTALIAHTYWNVEGAMQTANMVQFYKNLSIMGGLILLS 124


>emb|CAQ37316.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
 gb|AEG68256.1| conserved hypothetical protein [Ralstonia solanacearum Po82]
          Length = 136

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/110 (45%), Positives = 78/110 (70%)

Query: 10  IGRVLLASLFVISGIFKIVGFAGTVGYFGSLGLPVPTLAVLVTILVEVGGGLLLMTGRGV 69
           +GRVL+  LF+ISG  K+ GFA TVGY G++G P+P LA ++ +++E G G+ L+ G   
Sbjct: 15  LGRVLMMLLFLISGWGKVTGFAATVGYMGTVGAPMPMLAAIIAVIMEFGVGIALLIGFWT 74

Query: 70  RPVSLVIALFTVGATLSAHHFWTLEGAAAQGQMIHFLKNVALIGALLLVS 119
           RP++L++ALF +G  L AH +W +EGA     M+ F KN++++G L+L+S
Sbjct: 75  RPLALLMALFVLGTALIAHTYWNVEGAMQTANMVQFYKNLSIMGGLILLS 124


>emb|CBJ37085.1| conserved membrane protein of unknown function [Ralstonia
           solanacearum CMR15]
          Length = 136

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/110 (46%), Positives = 78/110 (70%)

Query: 10  IGRVLLASLFVISGIFKIVGFAGTVGYFGSLGLPVPTLAVLVTILVEVGGGLLLMTGRGV 69
           +GRVL+  LF+ISG  K+ GF+ TVGY G++G P+P LA +V +++E G G+ L+ G   
Sbjct: 15  LGRVLMMLLFLISGWGKLTGFSATVGYMGTVGAPMPMLAAIVAVIMEFGVGIALLIGFWT 74

Query: 70  RPVSLVIALFTVGATLSAHHFWTLEGAAAQGQMIHFLKNVALIGALLLVS 119
           RP++L++ALF +G  L AH FW +EGA     M+ F KN++++G L+L+S
Sbjct: 75  RPLALLMALFVLGTALIAHTFWNVEGAMQTANMVQFYKNLSIMGGLILLS 124