BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4793.p (308 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775941.1| LysR family transcription regulator protein ... 503 e-140 ref|YP_004754866.1| LysR family transcriptional regulator [Colli... 392 e-107 ref|YP_003749530.1| transcriptional regulator, lysr family [Rals... 270 3e-70 ref|YP_576351.1| LysR family transcriptional regulator [Nitrobac... 267 1e-69 ref|ZP_06639634.1| LysR family transcriptional regulator [Serrat... 262 6e-68 >ref|YP_003775941.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64033.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 274/300 (91%), Positives = 290/300 (96%) Query: 1 MNIERLSLDQLRVFVQVADSGSFLAAARKLSRAQSAVSYAIATLEDQLGVLLFDRSGYRP 60 MNIERLSLDQLRVFVQVADSGSFLAAARKL+RAQSAVSYAIA+LE+QLG+LLFDRSGYRP Sbjct: 1 MNIERLSLDQLRVFVQVADSGSFLAAARKLARAQSAVSYAIASLEEQLGLLLFDRSGYRP 60 Query: 61 QLTSPGVALLADARQVLDHVDSLQVRANSYARGQELEVSLAVDVFFPTDCLVDLLQRFRV 120 QLT+PG ALLADARQVLDHVDSLQVRA+SYARGQELE++LAVDVFFP DCLVDLLQRFR Sbjct: 61 QLTAPGEALLADARQVLDHVDSLQVRASSYARGQELEMALAVDVFFPLDCLVDLLQRFRA 120 Query: 121 AFPAVTVRLEVEALGAVAERVIDGRSMLGILGTLPTTPPNLLRITLPSVQLVAVVAPDHP 180 AFPAVTVRLEVEALGAVAERVIDGR+MLGILGTLPTTPPNL+RITLPSV+LVAVVAP HP Sbjct: 121 AFPAVTVRLEVEALGAVAERVIDGRAMLGILGTLPTTPPNLMRITLPSVRLVAVVAPHHP 180 Query: 181 LAKVKGRISEKLLQQQTQLVLSDRSELTARQDFSVHSRLTWRMSDLGTKHALLRAGMGWG 240 LAKVKGRI+EK+L QQTQLVLSDRSELTARQDFSVHSRLTWRMSDLGTKHALLRAGMGWG Sbjct: 181 LAKVKGRIAEKMLLQQTQLVLSDRSELTARQDFSVHSRLTWRMSDLGTKHALLRAGMGWG 240 Query: 241 NMPLHVVKNDLDSGRLVSISTIHHPPQGAELPIQCVYKPDHPAGPALSWWLDSLAALTAL 300 NMPLHVVK DL +GRLVSISTIHHPPQGAELPIQCVYKPDH AGPALSWWLD+LA L +L Sbjct: 241 NMPLHVVKEDLAAGRLVSISTIHHPPQGAELPIQCVYKPDHRAGPALSWWLDALANLGSL 300 >ref|YP_004754866.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK64043.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 303 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 221/303 (72%), Positives = 253/303 (83%) Query: 1 MNIERLSLDQLRVFVQVADSGSFLAAARKLSRAQSAVSYAIATLEDQLGVLLFDRSGYRP 60 MNIERLSLDQLRVF QVADSGSFLAAA+ L RAQSAVSYAI+TLE QLG+ LFDRS YRP Sbjct: 1 MNIERLSLDQLRVFAQVADSGSFLAAAKALKRAQSAVSYAISTLESQLGLPLFDRSSYRP 60 Query: 61 QLTSPGVALLADARQVLDHVDSLQVRANSYARGQELEVSLAVDVFFPTDCLVDLLQRFRV 120 QLT+ G+ LL DARQVLD VD+LQ RA +YA GQELE++LA+DVFFPT LV LL F++ Sbjct: 61 QLTAAGIELLRDARQVLDQVDALQARAAAYAHGQELEITLALDVFFPTSALVALLADFQL 120 Query: 121 AFPAVTVRLEVEALGAVAERVIDGRSMLGILGTLPTTPPNLLRITLPSVQLVAVVAPDHP 180 AFP VTVRLE+EALG+VAERV+DG +MLG+LGTLP PPNLLRI+LP+V LV VV+P H Sbjct: 121 AFPGVTVRLEIEALGSVAERVLDGVAMLGVLGTLPIVPPNLLRISLPTVLLVGVVSPAHA 180 Query: 181 LAKVKGRISEKLLQQQTQLVLSDRSELTARQDFSVHSRLTWRMSDLGTKHALLRAGMGWG 240 LA++ GRI +L+QQ QLVLSDRS LTA QDFSVHS L+WRMSDLGTKHALLRAGMGWG Sbjct: 181 LAQISGRIPGHVLEQQVQLVLSDRSALTANQDFSVHSSLSWRMSDLGTKHALLRAGMGWG 240 Query: 241 NMPLHVVKNDLDSGRLVSISTIHHPPQGAELPIQCVYKPDHPAGPALSWWLDSLAALTAL 300 MP HVV +DL SGRLV I T HPP+GA LP+QCVY+PD GPAL+WWLD+LA LT+ Sbjct: 241 YMPRHVVADDLASGRLVRILTAGHPPEGAALPMQCVYRPDREVGPALAWWLDALAQLTSF 300 Query: 301 APG 303 P Sbjct: 301 DPA 303 >ref|YP_003749530.1| transcriptional regulator, lysr family [Ralstonia solanacearum PSI07] emb|CBJ34887.1| Transcriptional regulator, LysR family [Ralstonia solanacearum PSI07] Length = 299 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 145/292 (49%), Positives = 194/292 (66%) Query: 3 IERLSLDQLRVFVQVADSGSFLAAARKLSRAQSAVSYAIATLEDQLGVLLFDRSGYRPQL 62 ++ +SLDQLR F+ D+GSF AAARKL RAQS VS +A LEDQLGV LFDRS PQL Sbjct: 2 LDGVSLDQLRAFIATVDAGSFSAAARKLRRAQSMVSGLVANLEDQLGVALFDRSRRYPQL 61 Query: 63 TSPGVALLADARQVLDHVDSLQVRANSYARGQELEVSLAVDVFFPTDCLVDLLQRFRVAF 122 T+ G LLADAR V+ +D ++ RA +G E E+ + VDVFFP + ++ + FR F Sbjct: 62 TTEGTVLLADARSVVGGIDGMKSRAKGMTKGLEPELCVVVDVFFPIQMISEVAKAFRERF 121 Query: 123 PAVTVRLEVEALGAVAERVIDGRSMLGILGTLPTTPPNLLRITLPSVQLVAVVAPDHPLA 182 P V +RL VEALG + V+DGR+ +GI+G+LPT P +L L +V V V A DHPLA Sbjct: 122 PMVPLRLYVEALGGAYQPVLDGRASVGIVGSLPTVPASLTAEKLTTVGFVMVAAQDHPLA 181 Query: 183 KVKGRISEKLLQQQTQLVLSDRSELTARQDFSVHSRLTWRMSDLGTKHALLRAGMGWGNM 242 ++G I+++ L + TQLVL+DRS+L+A ++F V S LTW ++DL KHA L +G+GWG M Sbjct: 182 ALRGPIAKEQLARHTQLVLTDRSDLSAGREFGVFSGLTWHLADLFAKHAFLLSGLGWGGM 241 Query: 243 PLHVVKNDLDSGRLVSISTIHHPPQGAELPIQCVYKPDHPAGPALSWWLDSL 294 PLH V+ DLD+GRLV + PP G + + Y P GPA W ++ L Sbjct: 242 PLHAVQADLDAGRLVELQIDEVPPGGLSMQMSAAYPTASPPGPAGRWLIERL 293 >ref|YP_576351.1| LysR family transcriptional regulator [Nitrobacter hamburgensis X14] gb|ABE61891.1| transcriptional regulator, LysR family [Nitrobacter hamburgensis X14] Length = 309 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 142/297 (47%), Positives = 195/297 (65%) Query: 3 IERLSLDQLRVFVQVADSGSFLAAARKLSRAQSAVSYAIATLEDQLGVLLFDRSGYRPQL 62 +E +S DQLR+FV AD GSF AAAR++ R QSAVS AI +LE QLGV+LFDR+G P+L Sbjct: 2 LESVSFDQLRMFVAAADEGSFSAAARRVRRTQSAVSEAILSLETQLGVVLFDRAGRYPKL 61 Query: 63 TSPGVALLADARQVLDHVDSLQVRANSYARGQELEVSLAVDVFFPTDCLVDLLQRFRVAF 122 T+ GV LLADAR V+ VD+++ RA A G E E++ +DVF P + + + + FR+ F Sbjct: 62 TTDGVVLLADARAVISGVDAMKARAKGIAGGLEAELTAVLDVFLPIEVIAEAAREFRIQF 121 Query: 123 PAVTVRLEVEALGAVAERVIDGRSMLGILGTLPTTPPNLLRITLPSVQLVAVVAPDHPLA 182 PA +R+ VEALG + V+DGR+ +G++G+LPT PP L++ L V+L+ V A HPLA Sbjct: 122 PATPLRIYVEALGGAVQPVLDGRASIGVVGSLPTLPPGLIKERLFDVKLMMVAAASHPLA 181 Query: 183 KVKGRISEKLLQQQTQLVLSDRSELTARQDFSVHSRLTWRMSDLGTKHALLRAGMGWGNM 242 +G I ++ L + QLVL+DRS LT + V S TW ++DL KHA L +G+G+G M Sbjct: 182 SYRGTIPKEELARHVQLVLTDRSTLTEGRTIGVMSPSTWHLADLFAKHAFLISGLGFGGM 241 Query: 243 PLHVVKNDLDSGRLVSISTIHHPPQGAELPIQCVYKPDHPAGPALSWWLDSLAALTA 299 PLH V D+ GRLV +S PP G LP+ VY+ P GPA W ++ L +A Sbjct: 242 PLHTVARDIAKGRLVELSIEEAPPGGLPLPMFAVYREGEPPGPAGRWMIERLKNCSA 298 >ref|ZP_06639634.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gb|EFE95279.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 303 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 148/294 (50%), Positives = 191/294 (64%) Query: 3 IERLSLDQLRVFVQVADSGSFLAAARKLSRAQSAVSYAIATLEDQLGVLLFDRSGYRPQL 62 ++ +SLDQLR F+ AD GSF AAARKL+R QSAVS +++LEDQ+GV+LFDRS P+L Sbjct: 2 LDGVSLDQLRTFITAADEGSFSAAARKLNRVQSAVSGWVSSLEDQIGVMLFDRSAKFPKL 61 Query: 63 TSPGVALLADARQVLDHVDSLQVRANSYARGQELEVSLAVDVFFPTDCLVDLLQRFRVAF 122 T GV LLADAR ++ VD+L+ RA G E E+S+ VDV FPT + + + F V F Sbjct: 62 TPAGVLLLADARNIVAGVDTLKARARQMTSGVEAELSVVVDVCFPTSVVSAVAKAFAVRF 121 Query: 123 PAVTVRLEVEALGAVAERVIDGRSMLGILGTLPTTPPNLLRITLPSVQLVAVVAPDHPLA 182 P +RL VEALGA + V+DGR LGIL LP T P+LL L V LVAV + HPLA Sbjct: 122 PLTPLRLFVEALGAAYQPVLDGRCSLGILPPLPQTFPSLLSERLGEVPLVAVASASHPLA 181 Query: 183 KVKGRISEKLLQQQTQLVLSDRSELTARQDFSVHSRLTWRMSDLGTKHALLRAGMGWGNM 242 + RI L + QLVLSDRSELT +DF+V S TWR++DL TKHA L+ +GWG M Sbjct: 182 RFARRIPRSELSKHRQLVLSDRSELTTGRDFAVASPTTWRLADLSTKHAFLKDNVGWGGM 241 Query: 243 PLHVVKNDLDSGRLVSISTIHHPPQGAELPIQCVYKPDHPAGPALSWWLDSLAA 296 PLH+V+ D+ G LV + P G L + ++P P GPA W+++ L A Sbjct: 242 PLHMVEKDIAEGTLVVLDVDDMPRTGFVLTMSAFHRPSQPPGPAGVWFINQLKA 295