BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4792.p         (98 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004158216.1| XRE family transcriptional regulator [Variov...    84   1e-14
ref|YP_004236873.1| helix-turn-helix domain-containing protein [...    83   1e-14
ref|YP_972830.1| XRE family transcriptional regulator [Acidovora...    82   3e-14
ref|YP_547201.1| XRE family transcriptional regulator [Polaromon...    81   6e-14
emb|CBJ38697.1| putative transcription regulator protein (hipB) ...    65   3e-09

>ref|YP_004158216.1| XRE family transcriptional regulator [Variovorax paradoxus EPS]
 gb|ADU40105.1| helix-turn-helix domain protein [Variovorax paradoxus EPS]
          Length = 175

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/92 (53%), Positives = 63/92 (68%), Gaps = 3/92 (3%)

Query: 4  DFPISLSIQLREHLRALRKQRHMTQAQLGERIGISQARIAEIEANPGAVSVEQMLLLLST 63
          D+P+    QLR HL+ALRK+R +TQAQ G  +G+SQARIAEIEANPGAV +E +  LLS 
Sbjct: 2  DYPLRFVDQLRPHLKALRKKRGLTQAQAGALVGVSQARIAEIEANPGAVGLEHLAKLLSA 61

Query: 64 LGAGLKLHVHA--ADKPVHAVGEDGVVYIPSR 93
          LGA   L   A  +  PV+A+ E+G  Y  S+
Sbjct: 62 LGASFYLRDDAPPSSGPVYAM-EEGPEYASSQ 92


>ref|YP_004236873.1| helix-turn-helix domain-containing protein [Acidovorax avenae
          subsp. avenae ATCC 19860]
 gb|ADX48306.1| helix-turn-helix domain protein [Acidovorax avenae subsp. avenae
          ATCC 19860]
          Length = 136

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/65 (64%), Positives = 53/65 (81%)

Query: 4  DFPISLSIQLREHLRALRKQRHMTQAQLGERIGISQARIAEIEANPGAVSVEQMLLLLST 63
          D+P+ L+ QLREHLRALRK R +TQA LG+ +G+ QARIAEIE NPGAVSV+Q++ +LS 
Sbjct: 2  DYPLHLTSQLREHLRALRKARGLTQAALGQMLGVGQARIAEIEGNPGAVSVDQLMKVLSA 61

Query: 64 LGAGL 68
          L A L
Sbjct: 62 LRASL 66


>ref|YP_972830.1| XRE family transcriptional regulator [Acidovorax citrulli
          AAC00-1]
 gb|ABM35056.1| transcriptional regulator, XRE family [Acidovorax citrulli
          AAC00-1]
          Length = 168

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/65 (64%), Positives = 51/65 (78%)

Query: 4  DFPISLSIQLREHLRALRKQRHMTQAQLGERIGISQARIAEIEANPGAVSVEQMLLLLST 63
          D+PI L+ QLREHLRALRK R +TQA LG  +G+ QARIAEIE NPGAVSV+Q++ +LS 
Sbjct: 2  DYPIHLTSQLREHLRALRKARGLTQAALGRLLGVGQARIAEIEGNPGAVSVDQLMKVLSA 61

Query: 64 LGAGL 68
          L   L
Sbjct: 62 LRTSL 66


>ref|YP_547201.1| XRE family transcriptional regulator [Polaromonas sp. JS666]
 gb|ABE42303.1| transcriptional regulator, XRE family [Polaromonas sp. JS666]
          Length = 171

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/70 (61%), Positives = 53/70 (75%)

Query: 1  MLNDFPISLSIQLREHLRALRKQRHMTQAQLGERIGISQARIAEIEANPGAVSVEQMLLL 60
          M  DFPI L+ QLREHLR+LRK   +TQA LG  +G+ QAR+AEIE NPGAVSV+Q++ +
Sbjct: 1  MHMDFPIHLTSQLREHLRSLRKTHGLTQAALGRLLGVGQARVAEIENNPGAVSVDQLMKV 60

Query: 61 LSTLGAGLKL 70
          LS L A L L
Sbjct: 61 LSALRASLVL 70


>emb|CBJ38697.1| putative transcription regulator protein (hipB) [Ralstonia
          solanacearum CMR15]
          Length = 84

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 48/68 (70%)

Query: 7  ISLSIQLREHLRALRKQRHMTQAQLGERIGISQARIAEIEANPGAVSVEQMLLLLSTLGA 66
          +S + QL  HL++LRK R +TQAQLG  +G+SQ RIA+IE +PGAV  EQ+L +L  LGA
Sbjct: 5  LSSAPQLSAHLKSLRKARGLTQAQLGALLGVSQNRIADIEKDPGAVGFEQLLRILHALGA 64

Query: 67 GLKLHVHA 74
           L L   A
Sbjct: 65 QLTLRTSA 72