BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4791.p (434 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004158215.1| hipa n-terminal domain-containing protein [V... 518 e-145 ref|YP_547200.1| HipA-like protein [Polaromonas sp. JS666] >gi|9... 470 e-130 ref|YP_972831.1| HipA domain-containing protein [Acidovorax citr... 429 e-118 ref|YP_004236874.1| HipA N-terminal domain-containing protein [A... 428 e-117 emb|CCA86692.1| transcriptional repressor which interacts with H... 421 e-115 >ref|YP_004158215.1| hipa n-terminal domain-containing protein [Variovorax paradoxus EPS] gb|ADU40104.1| HipA N-terminal domain protein [Variovorax paradoxus EPS] Length = 442 Score = 518 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 262/432 (60%), Positives = 312/432 (72%), Gaps = 3/432 (0%) Query: 2 LHAWMNGELVGTWSVERQVHRFRYAPTWVRSSHFRPLSLSLPLTASGELRGDSVRNYFDN 61 L+AWMNGELVGTWSV+R H FRY P W+ S R LSLS+P+ ++ E+RGD VRNYFDN Sbjct: 4 LNAWMNGELVGTWSVDRDSHAFRYHPGWLDSPRRRSLSLSIPINSTLEVRGDVVRNYFDN 63 Query: 62 LLPDNADIRERLRQRYRLPSTEVFDLLQALGRDCVGALQLLPPDQEPQGWRSIHCERLDE 121 LLPDN IR RL R+RL FDLL+A+GRDCVGA+QLLP EP+GW +++CE + + Sbjct: 64 LLPDNIAIRVRLGHRFRLKGINTFDLLEAIGRDCVGAVQLLPEGAEPEGWNAMNCEPIGD 123 Query: 122 AMLEQLLYALPLSSPPASAQ-EDALRISIAGAQEKTALTWHRGKWCRPLGATPTTHIIKL 180 + +LL A+P + P S + ED RIS+AGAQEKTALT G WCRP GATPTTHIIKL Sbjct: 124 KEIAELLRAVPSDATPESMRDEDLFRISLAGAQEKTALTRWNGAWCRPHGATPTTHIIKL 183 Query: 181 PLGLIGGVMQRVDAGDSVYNEWLCSRILAAMGLPVAPARVEHFGRHTVLAVERFDRVRMK 240 PLGLIGG +RVDA DSV NEW+C++I+ A+GL VAP + F T L VERFDR M Sbjct: 184 PLGLIGG-SRRVDASDSVQNEWVCAQIVEALGLLVAPTSMATFEGQTALVVERFDREWMD 242 Query: 241 EG-WIARLPQEDFCQAFGLPPTMKYESQGGPGLNQCLGLLNASSQGGDKTYFLLAQLAFF 299 G WIARLPQEDFCQA GLP T KYE GPG+ CL LL S D+T FLL QLAFF Sbjct: 243 GGTWIARLPQEDFCQAMGLPSTRKYEHDEGPGMPNCLQLLQGSRSTDDRTRFLLTQLAFF 302 Query: 300 LLAATDGHAKNFSLHLHAGGRYEMTPLYDVLSMWPYFGKGPNQFRARQAGPAMLLRGRNP 359 LLAATDGHAKNFS+ L+ G Y+MTPLYD++SMWPYFG G +QF+ R+AG AM +R ++ Sbjct: 303 LLAATDGHAKNFSVRLYQGDVYDMTPLYDIISMWPYFGNGSHQFQPRKAGLAMAVRSKSK 362 Query: 360 HRHFHTIEARHWRQLALQHGGEPVWQAMLALVQGAEHALAVAEGELADDFPARTWERISE 419 H FHTI+ARHW QLA+++GG VW AML +V E AL E L DFPA TWE IS Sbjct: 363 HYLFHTIQARHWHQLAMKNGGIDVWNAMLDMVASLEEALGEVEALLPADFPASTWEAISR 422 Query: 420 GVRHHQERFLRG 431 G+R RFL G Sbjct: 423 GMRSEAARFLAG 434 >ref|YP_547200.1| HipA-like protein [Polaromonas sp. JS666] gb|ABE42302.1| HipA-like protein [Polaromonas sp. JS666] Length = 440 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 244/432 (56%), Positives = 292/432 (67%), Gaps = 6/432 (1%) Query: 2 LHAWMNGELVGTWSVERQVHRFRYAPTWVRSSHFRPLSLSLPLTASGELRGDSVRNYFDN 61 L+AWMNGE VG W V R H F YAP+W+ S RPLSLSLPLT + E++G+ V NYFDN Sbjct: 4 LNAWMNGEFVGAWQVNRGTHNFSYAPSWLESEKSRPLSLSLPLTRTLEIKGEVVANYFDN 63 Query: 62 LLPDNADIRERLRQRYRLPSTEVFDLLQALGRDCVGALQLLPPDQEPQGWRSIHCERLDE 121 LLPDN IRER+ +R+R + + F LL+A+GRDCVGA+QLLP P GW + CE L E Sbjct: 64 LLPDNDKIRERIGRRFRTKTLDAFALLEAIGRDCVGAVQLLPEGTVPDGWNHVECEPLTE 123 Query: 122 AMLEQLLYALPLSSPPASAQEDA--LRISIAGAQEKTALTWHRGKWCRPLGATPTTHIIK 179 + L A+P P A +A RIS+AGAQEKTA G+WCRPLGATP+THI K Sbjct: 124 EQVADALRAVP-GDPVARQVNEAPPFRISLAGAQEKTAFVQVDGQWCRPLGATPSTHIFK 182 Query: 180 LPLGLIGGVMQRVDAGDSVYNEWLCSRILAAMGLPVAPARVEHFGRHTVLAVERFDRVRM 239 LPLG+I RV+ DSV NEWLC++I+ A+GLP+A + FG L VERFDR M Sbjct: 183 LPLGVIANTT-RVEMFDSVENEWLCAQIIQALGLPMAHTEMAMFGDQRALVVERFDRGWM 241 Query: 240 KEG-WIARLPQEDFCQAFGLPPTMKYESQGGPGLNQCLGLLNASSQG-GDKTYFLLAQLA 297 KEG WIARLPQEDFCQA GLPP +KYE GGP + L LL+ S+ D+T F LAQLA Sbjct: 242 KEGKWIARLPQEDFCQALGLPPRLKYEDDGGPSVADGLKLLSGSADAQTDRTAFQLAQLA 301 Query: 298 FFLLAATDGHAKNFSLHLHAGGRYEMTPLYDVLSMWPYFGKGPNQFRARQAGPAMLLRGR 357 F+L+AA DGHAKNFS+ L G Y+MTPLYDVLS+WPY GKG Q R A AM LR + Sbjct: 302 FWLMAAPDGHAKNFSIFLRQGNAYDMTPLYDVLSVWPYVGKGRGQLHLRNARLAMALRSK 361 Query: 358 NPHRHFHTIEARHWRQLALQHGGEPVWQAMLALVQGAEHALAVAEGELADDFPARTWERI 417 N H HTI ARHW LA+++GG VW+AML LV AL E +L FP R WE I Sbjct: 362 NTHYDIHTIRARHWHDLAMKNGGPFVWEAMLGLVDRVVLALDTVEAQLPQSFPERIWEPI 421 Query: 418 SEGVRHHQERFL 429 S+G+R ERFL Sbjct: 422 SQGMRSQAERFL 433 >ref|YP_972831.1| HipA domain-containing protein [Acidovorax citrulli AAC00-1] gb|ABM35057.1| HipA domain protein [Acidovorax citrulli AAC00-1] Length = 440 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 231/432 (53%), Positives = 284/432 (65%), Gaps = 6/432 (1%) Query: 2 LHAWMNGELVGTWSVERQVHRFRYAPTWVRSSHFRPLSLSLPLTASGELRGDSVRNYFDN 61 L AWMNGE VGTW V R H F YAP+W+ S RPLSLSLPLT + E++G+ V NYFDN Sbjct: 4 LDAWMNGEFVGTWQVHRGAHSFSYAPSWLESEKSRPLSLSLPLTRTLEIKGEVVANYFDN 63 Query: 62 LLPDNADIRERLRQRYRLPSTEVFDLLQALGRDCVGALQLLPPDQEPQGWRSIHCERLDE 121 LLPDN IRER+ +R++ + + F LL+A+GRDCVGA+QLLP P GW + E L + Sbjct: 64 LLPDNERIRERIARRFKTRARDTFTLLEAIGRDCVGAVQLLPEGTTPDGWNRVAGEPLTD 123 Query: 122 AMLEQLLYALPLSSPPASAQEDA--LRISIAGAQEKTALTWHRGKWCRPLGATPTTHIIK 179 + L A+P P A +A RIS+AGAQEKTA G+WC P+GATP+THI K Sbjct: 124 EQVAAALRAVP-DDPVARHANEARPFRISLAGAQEKTAFVQVNGQWCSPVGATPSTHIFK 182 Query: 180 LPLGLIGGVMQRVDAGDSVYNEWLCSRILAAMGLPVAPARVEHFGRHTVLAVERFDRVRM 239 LPLG+I Q VD DSV NEWLC++I+ A+GLP+A + FG L VERFDR M Sbjct: 183 LPLGVIANTTQ-VDMFDSVENEWLCAQIVQALGLPMARTEMATFGDQKALIVERFDREWM 241 Query: 240 KEG-WIARLPQEDFCQAFGLPPTMKYESQGGPGLNQCLGLLNASSQGG-DKTYFLLAQLA 297 G WIARLPQEDFCQA GLP +KYES GGP + L LL S+ D+ F LAQLA Sbjct: 242 DGGKWIARLPQEDFCQALGLPSHLKYESDGGPSVATGLTLLAGSADADMDRMAFQLAQLA 301 Query: 298 FFLLAATDGHAKNFSLHLHAGGRYEMTPLYDVLSMWPYFGKGPNQFRARQAGPAMLLRGR 357 F+L+AA DGHAKNFS+ L G Y+M PLYDVLS+WPY G+ Q R AM LR + Sbjct: 302 FWLMAAPDGHAKNFSIFLRQGNAYDMAPLYDVLSVWPYVGRKRGQLHLRDVRLAMALRSK 361 Query: 358 NPHRHFHTIEARHWRQLALQHGGEPVWQAMLALVQGAEHALAVAEGELADDFPARTWERI 417 N H HTI ARHW LA+++GG P+W+AM LV G AL E +L FP R W+ I Sbjct: 362 NTHYEIHTIRARHWHALAMKNGGPPIWKAMQDLVGGVGQALESVEAQLPRSFPERIWDPI 421 Query: 418 SEGVRHHQERFL 429 ++G+R E+FL Sbjct: 422 AKGMRGQAEKFL 433 >ref|YP_004236874.1| HipA N-terminal domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX48307.1| HipA N-terminal domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 440 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 230/432 (53%), Positives = 282/432 (65%), Gaps = 6/432 (1%) Query: 2 LHAWMNGELVGTWSVERQVHRFRYAPTWVRSSHFRPLSLSLPLTASGELRGDSVRNYFDN 61 L+AWMNGE VGTW V R H F YAP+W+ S RPLSLSLPLT + ++RG+ V NYFDN Sbjct: 4 LNAWMNGEFVGTWRVHRGAHSFSYAPSWLESGKSRPLSLSLPLTRTLDIRGEVVANYFDN 63 Query: 62 LLPDNADIRERLRQRYRLPSTEVFDLLQALGRDCVGALQLLPPDQEPQGWRSIHCERLDE 121 LLPDN IRER+ +R++ + + F LL+A+GRDCVGA+QLLP P GW + E L + Sbjct: 64 LLPDNERIRERIARRFKTRTRDAFTLLEAIGRDCVGAVQLLPEGTTPDGWNRVAGEPLTD 123 Query: 122 AMLEQLLYALPLSSPPASAQEDA--LRISIAGAQEKTALTWHRGKWCRPLGATPTTHIIK 179 + L A+P P A +A RIS+AGAQEKTA G+WC P+GATP+THI K Sbjct: 124 EQVAAALRAVP-DDPLARHANEARPFRISLAGAQEKTAFVQVNGQWCSPVGATPSTHIFK 182 Query: 180 LPLGLIGGVMQRVDAGDSVYNEWLCSRILAAMGLPVAPARVEHFGRHTVLAVERFDRVRM 239 LPLG+I Q VD DSV NEWLC++I+ A+GLP+A + FG L VERFDR M Sbjct: 183 LPLGVIANTTQ-VDMFDSVENEWLCAQIIQALGLPMARTEMATFGDQKALIVERFDREWM 241 Query: 240 KEG-WIARLPQEDFCQAFGLPPTMKYESQGGPGLNQCLGLLNASSQGG-DKTYFLLAQLA 297 G WIARLPQEDFCQA GLP +KYES GGP + L LL S+ D+ F LAQL Sbjct: 242 DGGQWIARLPQEDFCQALGLPSHLKYESDGGPSVATGLTLLAGSADADTDRMAFQLAQLT 301 Query: 298 FFLLAATDGHAKNFSLHLHAGGRYEMTPLYDVLSMWPYFGKGPNQFRARQAGPAMLLRGR 357 F+L+AA DGHAKNFS+ L G Y+M PLYDVLS+WPY G+ Q R AM LR + Sbjct: 302 FWLMAAPDGHAKNFSIFLRQGNAYDMAPLYDVLSVWPYVGRKRGQLHLRDVRLAMALRSK 361 Query: 358 NPHRHFHTIEARHWRQLALQHGGEPVWQAMLALVQGAEHALAVAEGELADDFPARTWERI 417 N H HTI ARHW LA+++GG P+W+AM LV G AL E L FP R W+ I Sbjct: 362 NTHYEIHTIRARHWHALAMKNGGPPIWEAMQGLVGGVGQALESVEARLPRSFPERIWDPI 421 Query: 418 SEGVRHHQERFL 429 + G+R E+FL Sbjct: 422 ARGMRGQAEKFL 433 >emb|CCA86692.1| transcriptional repressor which interacts with HipB [Ralstonia syzygii R24] Length = 444 Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 244/434 (56%), Positives = 283/434 (65%), Gaps = 8/434 (1%) Query: 2 LHAWMNGELVGTWSVERQ-VHRFRYAPTWVRSSHFRPLSLSLPLTAS-GELRGDSVRNYF 59 LH WMNGE VG W+ R V RY W+RS + RPLSLSLP+ A ELRG V +YF Sbjct: 6 LHLWMNGEHVGVWTASRAGVPILRYDEGWLRSPNVRPLSLSLPIPAGVPELRGQMVDDYF 65 Query: 60 DNLLPDNADIRERLRQRYRLPSTEVFDLLQALGRDCVGALQLLPPDQEPQGWRSIHCERL 119 DNLLPD IRER+R+R+ L STE +LL A+GRDCVGA+QLLPP P G+ I E L Sbjct: 66 DNLLPDAQPIRERVRRRFGLASTEAAELLAAIGRDCVGAVQLLPPGMAPAGFDRIDSEPL 125 Query: 120 DEAMLEQLLYALP-LSSPPASAQE-DALRISIAGAQEKTALTWHRGKWCRPLGATPTTHI 177 + ++ LL L L +P A + DA RISIAGAQEKTAL W RPLGATPTTHI Sbjct: 126 SDPQVDVLLRNLTHLPAPGEDADDLDAFRISIAGAQEKTALLRIGDTWHRPLGATPTTHI 185 Query: 178 IKLPLGLIGGVMQRVDAGDSVYNEWLCSRILAAMGLPVAPARVEHFGRHTVLAVERFDRV 237 +KLPLGLIG + R D DSV NEWLC+++LAA GL VA + FG VLAVERFDR Sbjct: 186 LKLPLGLIGNI--RADMQDSVDNEWLCAQLLAAWGLEVARTEIARFGARRVLAVERFDRR 243 Query: 238 RMKE-GWIARLPQEDFCQAFGLPPTMKYESQGGPGLNQCLGLLNASSQG-GDKTYFLLAQ 295 M + WIARLPQEDFCQA G P KYES GGPG+ CL LL+AS Q DK F+LAQ Sbjct: 244 WMADHTWIARLPQEDFCQATGTPAHRKYESDGGPGMRACLDLLSASEQAIDDKRRFVLAQ 303 Query: 296 LAFFLLAATDGHAKNFSLHLHAGGRYEMTPLYDVLSMWPYFGKGPNQFRARQAGPAMLLR 355 LAF+LLAATDGHAKNFSL + GGR+ MTPLYDVLS+WP G GPNQ +A AM+LR Sbjct: 304 LAFWLLAATDGHAKNFSLAIGRGGRFRMTPLYDVLSVWPIVGDGPNQLSPYRARLAMVLR 363 Query: 356 GRNPHRHFHTIEARHWRQLALQHGGEPVWQAMLALVQGAEHALAVAEGELADDFPARTWE 415 G+N H I RHW+ LA Q G + M ALV+ L E L DF R W+ Sbjct: 364 GKNAHARLTDIHVRHWQALAAQSGVPDAFARMQALVERVPAGLDQVEAILPRDFSGRVWD 423 Query: 416 RISEGVRHHQERFL 429 + GV ERFL Sbjct: 424 SVRTGVLAQAERFL 437