BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4790.p (337 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775942.1| AraC family transcription regulator protein ... 491 e-136 ref|ZP_08182390.1| transcriptional regulator, AraC family with a... 320 2e-85 ref|YP_001857028.1| AraC family transcriptional regulator [Burkh... 310 1e-82 ref|YP_001896567.1| AraC family transcriptional regulator [Burkh... 306 3e-81 ref|YP_004229061.1| AraC family transcriptional regulator [Burkh... 304 1e-80 >ref|YP_003775942.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64034.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 343 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 269/334 (80%), Positives = 290/334 (86%), Gaps = 7/334 (2%) Query: 4 MNPVLSAQATQAPRNVVLLAYGGMNLLDLAGPMQVLATTNRLQGREVYRLHVASAEGGAV 63 MNP+ PR VV LAY GMNLLDL+GPMQVLATTNRLQGREVYRLHV SA+GG + Sbjct: 1 MNPL------HPPRRVVFLAYAGMNLLDLSGPMQVLATTNRLQGREVYRLHVVSAQGGTI 54 Query: 64 TTSAGLPVLTQALSALDGLLCAG-ELHTLISPGGSVGDSFRIDPALVAWIREAAPLARRV 122 TSAGLPV TQ+L +D LL A +LHTLISPGGS GD F +D ALVAWIR+ A A R+ Sbjct: 55 LTSAGLPVGTQSLQEMDRLLQATPDLHTLISPGGSSGDQFPLDAALVAWIRQHAQAAVRI 114 Query: 123 CSVCTGAFHLAEAGVLDGLRVTTHWDSAEDLQQRYPALEVDGEPIYIRQGRIWTSAGVTA 182 CSVCTGAFHLAEAGVLDGLRVTTHWD A++LQ+RYPAL+VD +PIYIRQGRIWTSAGVTA Sbjct: 115 CSVCTGAFHLAEAGVLDGLRVTTHWDWAQELQRRYPALQVDADPIYIRQGRIWTSAGVTA 174 Query: 183 GIDLTLALVEQDLGHAAAIATARQLVMFIKRPGGQSQFSTPLASQATGAGRFAELHAWIA 242 GIDL LALVEQDLGHA+AIATARQLVMFIKRPGGQSQFSTPLA+Q+TGAGRFAELHAWIA Sbjct: 175 GIDLALALVEQDLGHASAIATARQLVMFIKRPGGQSQFSTPLATQSTGAGRFAELHAWIA 234 Query: 243 GNLKHDLRVENLASRVNMSPRTFARTYVAEQGRTPAKTVEAMRLEAACRALEETDLPLKR 302 +L DL VENLA R MSPRTFAR YVAE GRTPA+TVE MRLEAA RALEET LPLKR Sbjct: 235 AHLADDLHVENLAHRAGMSPRTFARLYVAETGRTPARTVELMRLEAARRALEETRLPLKR 294 Query: 303 IASQSGYGEEQNLRRVFLRQLGVSPGQYRERFAA 336 IASQ+GYGEEQNLRRVFLRQLGVSPGQYRERFAA Sbjct: 295 IASQAGYGEEQNLRRVFLRQLGVSPGQYRERFAA 328 >ref|ZP_08182390.1| transcriptional regulator, AraC family with amidase-like domain [Xanthomonas gardneri ATCC 19865] gb|EGD19970.1| transcriptional regulator, AraC family with amidase-like domain [Xanthomonas gardneri ATCC 19865] Length = 327 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 172/319 (53%), Positives = 220/319 (68%), Gaps = 8/319 (2%) Query: 20 VLLAYGGMNLLDLAGPMQVLATTNRLQ----GREVYRLHVASAEGGAVTTSAGLPVLTQA 75 +LLA+ MN+LDL GP+Q L T N+ G Y++ VAS GG VTTS+GL V++ A Sbjct: 1 MLLAHEDMNVLDLTGPVQALHTANQCAPLAGGSSRYQITVASESGGLVTTSSGLQVMSVA 60 Query: 76 LSALDGLLCAGELHTLISPGGSVGDSFRIDPALVAWIREAAPLARRVCSVCTGAFHLAEA 135 +++LD + + TL++PGG G + + P LV W+ RR+CS+CTGAF LA A Sbjct: 61 IASLDDV----AIDTLMAPGGCRGAVYAVSPGLVEWVAARGASVRRLCSICTGAFLLAAA 116 Query: 136 GVLDGLRVTTHWDSAEDLQQRYPALEVDGEPIYIRQGRIWTSAGVTAGIDLTLALVEQDL 195 G LDG R THW A+ L +P + VD + I++R G +W+SAGVTAGIDLTLAL+E D Sbjct: 117 GHLDGRRAATHWGWADRLSNLHPGIRVDADKIFVRDGYVWSSAGVTAGIDLTLALIEDDH 176 Query: 196 GHAAAIATARQLVMFIKRPGGQSQFSTPLASQATGAGRFAELHAWIAGNLKHDLRVENLA 255 GH AI ARQLV+F+KR GGQSQFS PL++Q + G FAELH W+A NL DLRVE LA Sbjct: 177 GHRLAIDVARQLVVFVKRSGGQSQFSAPLSAQTSAGGDFAELHGWMAANLHEDLRVETLA 236 Query: 256 SRVNMSPRTFARTYVAEQGRTPAKTVEAMRLEAACRALEETDLPLKRIASQSGYGEEQNL 315 R+ MSPRTFAR Y + G TPAK VE +R+EAA R LE + P+KRIA+ +G +EQ L Sbjct: 237 GRMKMSPRTFARVYRSTCGVTPAKAVETLRVEAARRLLESGNAPIKRIAALTGLSDEQTL 296 Query: 316 RRVFLRQLGVSPGQYRERF 334 RR FLR LGV+PG YR+RF Sbjct: 297 RRTFLRVLGVAPGDYRDRF 315 >ref|YP_001857028.1| AraC family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC69982.1| transcriptional regulator, AraC family [Burkholderia phymatum STM815] Length = 363 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 184/344 (53%), Positives = 217/344 (63%), Gaps = 28/344 (8%) Query: 17 RNVVLLAYGGMNLLDLAGPMQVL--------------ATTNRLQGREVYRLHVASAEGGA 62 R+VV + LLD GP++ A + YR VAS +GG Sbjct: 21 RHVVFAVAPQLVLLDACGPLEAFHRAELTVRDARRMSAASPASHEPVAYRTTVASIDGGM 80 Query: 63 VTTSAGLPVLTQALSALDGLLCAGELHTLISPGGSVGDSFRIDPALVAWIREAAPLARRV 122 + T GLPV+TQ L ALDG + TLI PG V D + PAL+ WI AP RRV Sbjct: 81 LDTFPGLPVVTQRLDALDG----EPIDTLIVPGIPVDDPGTLQPALIDWIARRAPHVRRV 136 Query: 123 CSVCTGAFHLAEAGVLDGLRVTTHWDSAEDLQQRYPALEVDGEPIYIRQ---------GR 173 CSVCTGAF+LA AG+LDG R TTHW A L +R+ ++VD EPI+IR+ GR Sbjct: 137 CSVCTGAFYLAAAGLLDGRRATTHWRDAGRLAERFARVQVDAEPIFIRELLPGRAGDDGR 196 Query: 174 -IWTSAGVTAGIDLTLALVEQDLGHAAAIATARQLVMFIKRPGGQSQFSTPLASQATGAG 232 IWTSAGVTAGIDL LAL+++D GHA A+ AR+LV+F+KRPGGQSQFS LA+Q + G Sbjct: 197 SIWTSAGVTAGIDLALALIQEDYGHAVAMQVARRLVVFVKRPGGQSQFSAALAAQTSAGG 256 Query: 233 RFAELHAWIAGNLKHDLRVENLASRVNMSPRTFARTYVAEQGRTPAKTVEAMRLEAACRA 292 F LH W+A NL DL VE LA MSPR FAR YV E GRTPAKTV AMRLEAA RA Sbjct: 257 AFDGLHGWMASNLNGDLSVERLAEEARMSPRNFARRYVDEVGRTPAKTVSAMRLEAASRA 316 Query: 293 LEETDLPLKRIASQSGYGEEQNLRRVFLRQLGVSPGQYRERFAA 336 L E+ PLKRIA G+G EQNLRR F+R GV P YRERFA+ Sbjct: 317 LAESRRPLKRIALDCGFGSEQNLRRAFVRSFGVLPLDYRERFAS 360 >ref|YP_001896567.1| AraC family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD17343.1| transcriptional regulator, AraC family [Burkholderia phytofirmans PsJN] Length = 437 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 172/293 (58%), Positives = 208/293 (70%), Gaps = 11/293 (3%) Query: 51 YRLHVASAEGGAVTTSAGLPVLTQALSALDGLLCAGELHTLISPGGSVGDSFRIDPALVA 110 YR VAS +GG + T GLP++T+ L +LD + TLI PG V + ++P LVA Sbjct: 129 YRTTVASIDGGILQTFPGLPIVTERLDSLDD----QPIDTLIVPGVPVDEHCTLEPELVA 184 Query: 111 WIREAAPLARRVCSVCTGAFHLAEAGVLDGLRVTTHWDSAEDLQQRYPALEVDGEPIYIR 170 WIR AP ARRVCSVCTGAF+LA AG+LDG R TTHW A L QR+P + VD +PI+IR Sbjct: 185 WIRRHAPRARRVCSVCTGAFYLAAAGLLDGRRATTHWRDAPRLAQRFPNVHVDADPIFIR 244 Query: 171 Q-------GRIWTSAGVTAGIDLTLALVEQDLGHAAAIATARQLVMFIKRPGGQSQFSTP 223 G +WTSAGVTAGIDL LAL+E+D+GHA A+ AR+LV+F+KRPGGQSQ+S Sbjct: 245 DAGRHEGDGVVWTSAGVTAGIDLALALIEEDVGHAVAMQAARRLVVFMKRPGGQSQYSAA 304 Query: 224 LASQATGAGRFAELHAWIAGNLKHDLRVENLASRVNMSPRTFARTYVAEQGRTPAKTVEA 283 LA+QA+ G F LH+W+ +L+ DL VE LA R MSPRTFAR YV E GRTPAKTV A Sbjct: 305 LAAQASANGPFEALHSWMTAHLRDDLSVERLAERTRMSPRTFARRYVDEVGRTPAKTVSA 364 Query: 284 MRLEAACRALEETDLPLKRIASQSGYGEEQNLRRVFLRQLGVSPGQYRERFAA 336 +RLEAA RAL E+ PLKRIA G+G EQNLRR FLR+ GV P YRERF + Sbjct: 365 LRLEAASRALAESRRPLKRIALDCGFGSEQNLRRAFLRRFGVLPLDYRERFMS 417 >ref|YP_004229061.1| AraC family transcriptional regulator [Burkholderia sp. CCGE1001] gb|ADX56001.1| transcriptional regulator, AraC family [Burkholderia sp. CCGE1001] Length = 388 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 175/293 (59%), Positives = 209/293 (71%), Gaps = 11/293 (3%) Query: 51 YRLHVASAEGGAVTTSAGLPVLTQALSALDGLLCAGELHTLISPGGSVGDSFRIDPALVA 110 YR VAS EGG + T GLPV+T+ L +LD A + TLI PG V + + P LVA Sbjct: 71 YRTTVASVEGGVLQTFPGLPVVTERLESLD----AEPIDTLIVPGVPVDEHRPLQPELVA 126 Query: 111 WIREAAPLARRVCSVCTGAFHLAEAGVLDGLRVTTHWDSAEDLQQRYPALEVDGEPIYIR 170 WIR AP ARRVCSVCTGAF+LA AG+LDG R TTHW A L R+P + VD +PI+IR Sbjct: 127 WIRRNAPRARRVCSVCTGAFYLAAAGLLDGRRATTHWRDAAQLASRFPNVHVDADPIFIR 186 Query: 171 Q-------GRIWTSAGVTAGIDLTLALVEQDLGHAAAIATARQLVMFIKRPGGQSQFSTP 223 G +WTSAGVTAGIDL LAL+E+DLGHA A+ AR+LV+F+KRPGGQSQFS Sbjct: 187 DAGSGAGAGVVWTSAGVTAGIDLALALIEEDLGHAVAMQAARRLVVFMKRPGGQSQFSAA 246 Query: 224 LASQATGAGRFAELHAWIAGNLKHDLRVENLASRVNMSPRTFARTYVAEQGRTPAKTVEA 283 LA+QA+ G F LH+W+A +L+ DL VE LA R M+PRTFAR YV E GRTPAKTV A Sbjct: 247 LAAQASAGGPFDALHSWMAAHLREDLTVERLAERARMTPRTFARRYVDEVGRTPAKTVSA 306 Query: 284 MRLEAACRALEETDLPLKRIASQSGYGEEQNLRRVFLRQLGVSPGQYRERFAA 336 +RLEAA RAL E+ PLKRIA G+G EQNLRR F+R+ GV P +YRERF + Sbjct: 307 LRLEAASRALAESRRPLKRIALDCGFGSEQNLRRAFVRRFGVLPLEYRERFMS 359