BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4789.p (413 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775943.1| major facilitator superfamily permease [Herb... 531 e-148 ref|ZP_02927343.1| hypothetical protein VspiD_11875 [Verrucomicr... 405 e-111 ref|ZP_02887326.1| major facilitator superfamily MFS_1 [Burkhold... 397 e-108 ref|YP_003977713.1| major facilitator protein [Achromobacter xyl... 374 e-101 ref|YP_001631802.1| hypothetical protein Bpet3192 [Bordetella pe... 369 e-100 >ref|YP_003775943.1| major facilitator superfamily permease [Herbaspirillum seropedicae SmR1] gb|ADJ64035.1| permease of the major facilitator superfamily protein [Herbaspirillum seropedicae SmR1] Length = 417 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 351/408 (86%), Positives = 368/408 (90%), Gaps = 2/408 (0%) Query: 6 SADSHGGSRNAAILALCQGLFTCAISIDLTLTALTGWQLAPDKALATLPFALITVAGAVV 65 SA G+RNA +LALCQGLFTCAISIDLTLTALTGWQLAPDK+LATLPFALITVAGAVV Sbjct: 12 SAPDASGARNARVLALCQGLFTCAISIDLTLTALTGWQLAPDKSLATLPFALITVAGAVV 71 Query: 66 TWFAAFLIQRLGRRWSFVLGAASCCVGGLISVWSVWHGQFWFFCVGTALVGVFQAFAQYY 125 TWFAAFLIQRLGRRWSFVLGAASCCVGGL+SVWSVW G FW FC GTALVGVFQAFAQYY Sbjct: 72 TWFAAFLIQRLGRRWSFVLGAASCCVGGLVSVWSVWQGHFWSFCAGTALVGVFQAFAQYY 131 Query: 126 RLAAADAVAEAAKSRAISTVLAGGVIAALVGPALAAWSKDWFPAALFAGAYLVVALMGLL 185 RLAAADAV EAAKSRAI+TVLAGGVIAALVGPALAAWSKDW P ALFAGAYLVVA MGLL Sbjct: 132 RLAAADAVPEAAKSRAIATVLAGGVIAALVGPALAAWSKDWIPTALFAGAYLVVAAMGLL 191 Query: 186 SVAVLVLFYRDQAEPVAVAQSQSDLASARPLSAIARTPVFMASVANNVAGSMVMMFIMTA 245 SV L+LFYRDQ PVA +++SD A AR L I RTPVF+ASVANNVAGSMVMMFIMTA Sbjct: 192 SVLALLLFYRDQ--PVAAVRTESDGAPARALGQIVRTPVFLASVANNVAGSMVMMFIMTA 249 Query: 246 APLAAVACHHGIDDGAAIIQWHLMGMYAPSFFAGRLIQRFGLGPVLLAGLGMNLGCAVIA 305 APLAAVACHHGIDDGAAIIQWHLMGMYAPSFFAGRL+QR GLGPVLLAGL MNLGCAV+A Sbjct: 250 APLAAVACHHGIDDGAAIIQWHLMGMYAPSFFAGRLVQRVGLGPVLLAGLAMNLGCAVVA 309 Query: 306 MLSTTLRAFYVALLLLGVGWNFMFVGGTTLLAQSYTPSERAKTQGLAELMRYAATALATL 365 MLSTTL AFY+ALLLLGVGWNFMFVGGTTLLAQSY PSERAKTQG +EL+RYAATALATL Sbjct: 310 MLSTTLPAFYLALLLLGVGWNFMFVGGTTLLAQSYAPSERAKTQGFSELLRYAATALATL 369 Query: 366 GAGPLLARFGWETLNAAILPVLLVSALVTLRWMWAQRTARTALVAGLR 413 GAGPLLARFGW+TLN AILPVLL+SAL TL WM QR A T AGLR Sbjct: 370 GAGPLLARFGWQTLNLAILPVLLLSALATLHWMRGQRRAATLPPAGLR 417 >ref|ZP_02927343.1| hypothetical protein VspiD_11875 [Verrucomicrobium spinosum DSM 4136] Length = 405 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 260/397 (65%), Positives = 310/397 (78%) Query: 14 RNAAILALCQGLFTCAISIDLTLTALTGWQLAPDKALATLPFALITVAGAVVTWFAAFLI 73 RNA ILA+CQ L+ CAISIDLTLT LTG++LAPDK+LATLPFA+ITV+GA V++FAAFL+ Sbjct: 9 RNARILAVCQALYICAISIDLTLTGLTGYELAPDKSLATLPFAMITVSGAGVSYFAAFLL 68 Query: 74 QRLGRRWSFVLGAASCCVGGLISVWSVWHGQFWFFCVGTALVGVFQAFAQYYRLAAADAV 133 Q LGRR F LGA VGG ISVW+V G+FW FC GTA VGV+QAFA YYRLAAADAV Sbjct: 69 QWLGRRLGFTLGALIGAVGGGISVWAVMEGRFWLFCAGTAGVGVYQAFALYYRLAAADAV 128 Query: 134 AEAAKSRAISTVLAGGVIAALVGPALAAWSKDWFPAALFAGAYLVVALMGLLSVAVLVLF 193 AKSRAISTVLAGGV+AA++GPALAAWSKD P+ALFAGAYL+VAL+G+++ +L F Sbjct: 129 EPEAKSRAISTVLAGGVLAAIIGPALAAWSKDLIPSALFAGAYLMVALLGVIAAGLLWTF 188 Query: 194 YRDQAEPVAVAQSQSDLASARPLSAIARTPVFMASVANNVAGSMVMMFIMTAAPLAAVAC 253 Y D A + D A RPL I R PVF AS+ANNV GS+ M+F+MTAAPLAAV+C Sbjct: 189 YCDGDPITAGGVASMDDAGPRPLGVIVRQPVFAASMANNVIGSVTMLFVMTAAPLAAVSC 248 Query: 254 HHGIDDGAAIIQWHLMGMYAPSFFAGRLIQRFGLGPVLLAGLGMNLGCAVIAMLSTTLRA 313 HH IDDGA IIQWHL+GMYAPS G LI+R GL +L+AG +N+ C V A+ ST+L A Sbjct: 249 HHSIDDGANIIQWHLVGMYAPSLVTGWLIRRVGLLSLLVAGGVLNVVCVVAAVSSTSLPA 308 Query: 314 FYVALLLLGVGWNFMFVGGTTLLAQSYTPSERAKTQGLAELMRYAATALATLGAGPLLAR 373 FYVAL LGVGWNFMFVGG+TL AQSY PSERAKTQG++E +RYA TA ATL AGP+L Sbjct: 309 FYVALFALGVGWNFMFVGGSTLQAQSYRPSERAKTQGVSEFLRYATTAGATLAAGPVLQH 368 Query: 374 FGWETLNAAILPVLLVSALVTLRWMWAQRTARTALVA 410 +GW T+N AILP+LLV+ ++TL W A+R + L A Sbjct: 369 YGWSTVNLAILPLLLVATVLTLWWGRAERLKKEPLPA 405 >ref|ZP_02887326.1| major facilitator superfamily MFS_1 [Burkholderia graminis C4D1M] gb|EDT07114.1| major facilitator superfamily MFS_1 [Burkholderia graminis C4D1M] Length = 416 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 239/403 (59%), Positives = 312/403 (77%), Gaps = 4/403 (0%) Query: 2 RASLSADSHGGSRNAAILALCQGLFTCAISIDLTLTALTGWQLAPDKALATLPFALITVA 61 + + S D+ NA +L++ QGL+T A++IDLTLT LTG+QLAPDK+LATLPFALITVA Sbjct: 6 KEATSFDTGVRQSNAVVLSVAQGLYTAAVAIDLTLTGLTGYQLAPDKSLATLPFALITVA 65 Query: 62 GAVVTWFAAFLIQRLGRRWSFVLGAASCCVGGLISVWSVWHGQFWFFCVGTALVGVFQAF 121 A+ T FA+ L+Q++GRR FV+GAA+ +GGL+SVW++ FW+FC+GTA VG+FQAF Sbjct: 66 SAIATLFASLLMQKIGRRRGFVIGAATGALGGLVSVWAILQNDFWWFCLGTAAVGIFQAF 125 Query: 122 AQYYRLAAADAVAEAAKSRAISTVLAGGVIAALVGPALAAWSKDWFPAALFAGAYLVVAL 181 AQYYRLAAAD+VA K++AIS VLAGGVIAA++GPALAAWSK+ FP LFAG+YL+V L Sbjct: 126 AQYYRLAAADSVAPQQKAKAISMVLAGGVIAAILGPALAAWSKNLFPT-LFAGSYLMVFL 184 Query: 182 MGLLSVAVLVLFYRDQAEPVAVAQSQSDLASARPLSAIARTPVFMASVANNVAGSMVMMF 241 +G+ S+ VLV +RD + A + A AR L+ + R P+ +A++ANNV G +VMMF Sbjct: 185 LGVGSILVLVFGFRDVEAEIIPA---DEAAVARSLTTVFRQPISLAALANNVIGGVVMMF 241 Query: 242 IMTAAPLAAVACHHGIDDGAAIIQWHLMGMYAPSFFAGRLIQRFGLGPVLLAGLGMNLGC 301 +MTAAPLAAVA HH IDDGA IIQWHL+GM+APSF AG LI+R+G+ VL AG+ ++ C Sbjct: 242 VMTAAPLAAVANHHSIDDGANIIQWHLVGMFAPSFVAGHLIKRYGMPSVLFAGMLLSAAC 301 Query: 302 AVIAMLSTTLRAFYVALLLLGVGWNFMFVGGTTLLAQSYTPSERAKTQGLAELMRYAATA 361 IA S++L AFYVALL LG+GWNFMFVGGT LLA S+TP+ERAK QG+AEL+R TA Sbjct: 302 TFIASASSSLPAFYVALLCLGIGWNFMFVGGTALLASSHTPAERAKVQGVAELVRNIFTA 361 Query: 362 LATLGAGPLLARFGWETLNAAILPVLLVSALVTLRWMWAQRTA 404 A+L AGP+L RFGW LN +P+L+V+A +T+ WM +R++ Sbjct: 362 AASLVAGPILERFGWVNLNLVNVPLLVVAAALTVFWMRTERSS 404 >ref|YP_003977713.1| major facilitator protein [Achromobacter xylosoxidans A8] gb|ADP14998.1| major facilitator superfamily protein 16 [Achromobacter xylosoxidans A8] Length = 403 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 255/394 (64%), Positives = 311/394 (78%) Query: 12 GSRNAAILALCQGLFTCAISIDLTLTALTGWQLAPDKALATLPFALITVAGAVVTWFAAF 71 G RNA ILA+CQGL+ AISIDLTLTALTG LAP ALATLPFALITVAGA VTW+A+ Sbjct: 7 GLRNARILAVCQGLYIAAISIDLTLTALTGQMLAPHPALATLPFALITVAGAAVTWYASL 66 Query: 72 LIQRLGRRWSFVLGAASCCVGGLISVWSVWHGQFWFFCVGTALVGVFQAFAQYYRLAAAD 131 L+QR+GRR F+LG+ + GGLISV +V+ FW FC+GTALVGVFQAFAQYYRLAAAD Sbjct: 67 LMQRIGRRAGFILGSLAGAAGGLISVAAVFASDFWLFCLGTALVGVFQAFAQYYRLAAAD 126 Query: 132 AVAEAAKSRAISTVLAGGVIAALVGPALAAWSKDWFPAALFAGAYLVVALMGLLSVAVLV 191 AV AKSRAIS +L GGVIAA+ GPALAAW+KD FPAA+F+GAYL+VAL+G S +L+ Sbjct: 127 AVPAEAKSRAISVILTGGVIAAIAGPALAAWAKDIFPAAIFSGAYLMVALLGAASALLLL 186 Query: 192 LFYRDQAEPVAVAQSQSDLASARPLSAIARTPVFMASVANNVAGSMVMMFIMTAAPLAAV 251 + +A+ A +Q+ ARPL + R P+F+A++ANNV GS+ MMF+MTAAPLAAV Sbjct: 187 AYRDQEADGSQPADTQAAGLPARPLGEVMRQPIFVAALANNVVGSVSMMFVMTAAPLAAV 246 Query: 252 ACHHGIDDGAAIIQWHLMGMYAPSFFAGRLIQRFGLGPVLLAGLGMNLGCAVIAMLSTTL 311 AC H I DGA+I+QWHL+GMYAP+FFAG LI R GL VL G+ +N C++IAM ST+L Sbjct: 247 ACQHSIADGASIMQWHLIGMYAPAFFAGALINRLGLPRVLGMGMALNAACSLIAMQSTSL 306 Query: 312 RAFYVALLLLGVGWNFMFVGGTTLLAQSYTPSERAKTQGLAELMRYAATALATLGAGPLL 371 AF+ AL LGVGWNFMFVGGTTLLAQSY P+ERA+ QG AE++RYA TALATL AGP L Sbjct: 307 TAFHAALFCLGVGWNFMFVGGTTLLAQSYRPAERARVQGAAEMLRYATTALATLAAGPAL 366 Query: 372 ARFGWETLNAAILPVLLVSALVTLRWMWAQRTAR 405 AR GWE LNAA+LP++ ++A++T W ++RT R Sbjct: 367 ARMGWEALNAAMLPIVGLAAVMTGWWALSRRTER 400 >ref|YP_001631802.1| hypothetical protein Bpet3192 [Bordetella petrii DSM 12804] emb|CAP43533.1| putative membrane protein [Bordetella petrii] Length = 412 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 259/397 (65%), Positives = 316/397 (79%), Gaps = 1/397 (0%) Query: 10 HGGSRNAAILALCQGLFTCAISIDLTLTALTGWQLAPDKALATLPFALITVAGAVVTWFA 69 H G RNA +LA+CQGL+ AISIDLTLTALTG LAPDKALATLPFALITVAGA VTWFA Sbjct: 8 HAGRRNARVLAICQGLYIAAISIDLTLTALTGHMLAPDKALATLPFALITVAGAAVTWFA 67 Query: 70 AFLIQRLGRRWSFVLGAASCCVGGLISVWSVWHGQFWFFCVGTALVGVFQAFAQYYRLAA 129 + L+QR+GRR F LG + GGL+SVW+V+H FW FC GTALVGVFQAFAQYYRLAA Sbjct: 68 SLLMQRIGRRAGFALGGLAGTAGGLLSVWAVFHADFWLFCAGTALVGVFQAFAQYYRLAA 127 Query: 130 ADAVAEAAKSRAISTVLAGGVIAALVGPALAAWSKDWFPAALFAGAYLVVALMGLLSVAV 189 ADAV AAK+RAI+ V+AGGVIAA+ GPALAAWS+D FP A FAGAYL+VAL+G +VA+ Sbjct: 128 ADAVEAAAKARAIAVVMAGGVIAAVAGPALAAWSRDLFPLATFAGAYLMVALLGAATVAL 187 Query: 190 LVLFYRDQAE-PVAVAQSQSDLASARPLSAIARTPVFMASVANNVAGSMVMMFIMTAAPL 248 L+ YRD + P A + A ARPL +AR P+F+A++ANNV GS+ MMF+MTAAPL Sbjct: 188 LLAAYRDLPDVPADPASPREASAPARPLRVVARQPIFVAALANNVVGSVSMMFVMTAAPL 247 Query: 249 AAVACHHGIDDGAAIIQWHLMGMYAPSFFAGRLIQRFGLGPVLLAGLGMNLGCAVIAMLS 308 AAVACHH IDDGA I+QWHL+GMY P+FFAG L++R+GL +L G+ +N+ A +A+ S Sbjct: 248 AAVACHHSIDDGANIMQWHLIGMYGPAFFAGALVKRWGLPTMLGLGMAINVASAGVAIAS 307 Query: 309 TTLRAFYVALLLLGVGWNFMFVGGTTLLAQSYTPSERAKTQGLAELMRYAATALATLGAG 368 T+L AFY AL LGVGWNFMFVGGTTLLAQSY P+ER + QG AE++RYAATALATL AG Sbjct: 308 TSLPAFYAALFFLGVGWNFMFVGGTTLLAQSYRPAERGRAQGAAEMLRYAATALATLAAG 367 Query: 369 PLLARFGWETLNAAILPVLLVSALVTLRWMWAQRTAR 405 P L R+GW+ +N A+LPV+ ++AL+T W+ ++R R Sbjct: 368 PALDRYGWQAVNTAMLPVVGLAALMTAWWVRSERRGR 404