BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4787.p         (87 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775945.1| Crp/Fnr family transcription regulator [Herb...   163   7e-39
ref|YP_003776587.1| Crp/Fnr family transcription regulator [Herb...   115   2e-24
ref|YP_001099920.1| aerobic, anaerobic respiration, osmotic bala...   113   1e-23
ref|YP_001353329.1| Crp/FNR family transcriptional regulator [Ja...   112   2e-23
ref|ZP_08273907.1| transcriptional regulator, Crp/Fnr family [Ox...   111   4e-23

>ref|YP_003775945.1| Crp/Fnr family transcription regulator [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ64037.1| Crp/Fnr family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 255

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 81/87 (93%), Positives = 85/87 (97%)

Query: 1   MTAQQKMAAFMLNLSSRYASRGYSSTRFQLRMTREEIGNHLGLAVESVSRLLTNFKKTGV 60
           MTAQQKMAAF+LNLSSRY SRGYSSTRFQLRMTREEIGN+LGLAVESVSRLLTNFKK+GV
Sbjct: 169 MTAQQKMAAFLLNLSSRYMSRGYSSTRFQLRMTREEIGNYLGLAVESVSRLLTNFKKSGV 228

Query: 61  IEVNHRDVELCDLPALRAIALGNDPCA 87
           IEVNHRDVELCDLP LRA+ALGNDPCA
Sbjct: 229 IEVNHRDVELCDLPTLRAVALGNDPCA 255


>ref|YP_003776587.1| Crp/Fnr family transcription regulator [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ64679.1| Crp/Fnr family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 278

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/86 (61%), Positives = 72/86 (83%)

Query: 1   MTAQQKMAAFMLNLSSRYASRGYSSTRFQLRMTREEIGNHLGLAVESVSRLLTNFKKTGV 60
           M A+Q+ AAF++NLSSRYA+RGYSSTRFQLRMTR+++GN+LGL +ES+SRL++ F+K G+
Sbjct: 184 MRAEQRFAAFLVNLSSRYAARGYSSTRFQLRMTRQDVGNYLGLTIESISRLISKFRKQGL 243

Query: 61  IEVNHRDVELCDLPALRAIALGNDPC 86
           + V  RDVE+ DL AL+ +A G D C
Sbjct: 244 LAVEQRDVEVVDLAALKRLAAGVDAC 269


>ref|YP_001099920.1| aerobic, anaerobic respiration, osmotic balance transcriptional
           regulator [Herminiimonas arsenicoxydans]
 emb|CAL61795.1| Transcriptional activator protein anr [Herminiimonas
           arsenicoxydans]
          Length = 251

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/87 (58%), Positives = 74/87 (85%)

Query: 1   MTAQQKMAAFMLNLSSRYASRGYSSTRFQLRMTREEIGNHLGLAVESVSRLLTNFKKTGV 60
           M A+Q+ AAF++NL+SRY +RGYSST FQLRM+RE+IGN+LGL +ES+SRLL+ FKK G+
Sbjct: 165 MRAEQRFAAFLVNLASRYVARGYSSTSFQLRMSREDIGNYLGLTIESISRLLSKFKKQGL 224

Query: 61  IEVNHRDVELCDLPALRAIALGNDPCA 87
           ++V++R++EL DL  L+A+A G + C+
Sbjct: 225 LKVSNREIELLDLVTLKAMAAGTETCS 251


>ref|YP_001353329.1| Crp/FNR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gb|ABR90137.1| transcriptional regulator, Crp/Fnr family [Janthinobacterium sp.
           Marseille]
          Length = 252

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/87 (59%), Positives = 74/87 (85%)

Query: 1   MTAQQKMAAFMLNLSSRYASRGYSSTRFQLRMTREEIGNHLGLAVESVSRLLTNFKKTGV 60
           M A+Q+ AAF++NL+SRY +RGYSST FQLRM+RE+IGN+LGL +ES+SRLL+ FKK G+
Sbjct: 166 MRAEQRFAAFLVNLASRYMARGYSSTSFQLRMSREDIGNYLGLTIESISRLLSKFKKQGL 225

Query: 61  IEVNHRDVELCDLPALRAIALGNDPCA 87
           ++VN+R++EL DL  L+A+A G + C+
Sbjct: 226 LKVNNREIELLDLTLLKAMAAGTETCS 252


>ref|ZP_08273907.1| transcriptional regulator, Crp/Fnr family [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF32622.1| transcriptional regulator, Crp/Fnr family [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 254

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/86 (61%), Positives = 69/86 (80%)

Query: 1   MTAQQKMAAFMLNLSSRYASRGYSSTRFQLRMTREEIGNHLGLAVESVSRLLTNFKKTGV 60
           M A+Q+ AAF++NLSSRYA+RGYS+T FQLRM+RE+IGN+LGL +ES+SRLL+ FKK G 
Sbjct: 166 MRAEQRFAAFLVNLSSRYATRGYSATSFQLRMSREDIGNYLGLTIESISRLLSRFKKQGW 225

Query: 61  IEVNHRDVELCDLPALRAIALGNDPC 86
           +EV+ R+V L D   LRA+A G   C
Sbjct: 226 LEVDKREVRLLDATMLRALAAGTTHC 251