BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4783.p (482 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775949.1| integral membrane protein [Herbaspirillum se... 738 0.0 ref|YP_001372183.1| putative iron-regulated membrane protein [Oc... 493 e-137 ref|ZP_06687819.1| PepSY-associated TM helix protein [Achromobac... 478 e-132 ref|YP_004481964.1| PepSY-associated TM helix domain-containing ... 460 e-127 ref|YP_003260190.1| PepSY-associated TM helix domain protein [Pe... 456 e-126 >ref|YP_003775949.1| integral membrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64041.1| integral membrane protein [Herbaspirillum seropedicae SmR1] Length = 467 Score = 738 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 442/470 (94%), Positives = 454/470 (96%), Gaps = 3/470 (0%) Query: 13 MRLPSMTTHSFQPASQAQAAARRQSATALHALLLRLHFYIGLFVGPFILVAALTGTLYVL 72 MRLPSMTTHSFQPASQAQAAARRQSATAL ALLLR+HFYIGLFVGPFILVAALTGTLYVL Sbjct: 1 MRLPSMTTHSFQPASQAQAAARRQSATALQALLLRMHFYIGLFVGPFILVAALTGTLYVL 60 Query: 73 TPQIESHLYATQLRNASQGPAQPLAAQVQAARAFLGPQARLFAVRPAKAQGWNTRVMFTQ 132 TPQIESHLYATQLRNASQGPAQPLAAQVQAARAFLGPQARLFAVRPAKA GWNTRVMF+Q Sbjct: 61 TPQIESHLYATQLRNASQGPAQPLAAQVQAARAFLGPQARLFAVRPAKAPGWNTRVMFSQ 120 Query: 133 PGLGDSESRAIFVDPVSLQVKGDLIVYGTSGVLPLRTTLDYLHRNLMLGDVGRNYSELAA 192 PGLGDSESRAIFVDPVSLQV+GDLIVYGTSGVLPLRTTLDYLHRNLMLG++GRNYSELAA Sbjct: 121 PGLGDSESRAIFVDPVSLQVRGDLIVYGTSGVLPLRTTLDYLHRNLMLGELGRNYSELAA 180 Query: 193 SWLWLGAFGGVWLWWRGRQRRAASAVRAPRPMNARRLHALVGLWIVLGLVFFSATGLTWS 252 SWLWLGA GGVWLWWR R R V+A RP+ ARRLHALVGLWIV+GLVFFSATGLTWS Sbjct: 181 SWLWLGALGGVWLWWRARTR---GRVQAARPLTARRLHALVGLWIVIGLVFFSATGLTWS 237 Query: 253 RWAGERVSQMRTQLGWITPSVSTQLQPGAPAMSMGEHADHMAAHGMAMAMPAVDDPARFD 312 RWAGERV+ MR QLGWITPSVSTQLQPGAPAMSMGEHADHMAAHGMAMAMPAVDDPARFD Sbjct: 238 RWAGERVNLMRAQLGWITPSVSTQLQPGAPAMSMGEHADHMAAHGMAMAMPAVDDPARFD 297 Query: 313 MVQSIARAGGIDAAEIEIRPPRAAQQAWVVREVDRSWPTQVDTVAIDADRMRITSRADFA 372 MVQSIARAGGIDAAEIEIRPPRAAQQAWVVREVDRSWPTQVDTVAIDADRMRITSRADFA Sbjct: 298 MVQSIARAGGIDAAEIEIRPPRAAQQAWVVREVDRSWPTQVDTVAIDADRMRITSRADFA 357 Query: 373 SFPLIAKLIRWGVDAHMGVLFGVANQILMAAFGIALTGLIVLGYVMWWRRRPAAGASLAP 432 SFPLIAKLIRWGVDAHMGVLFGVANQILMAAFGIALTGLI LGY+MWWRRRPAAGASLAP Sbjct: 358 SFPLIAKLIRWGVDAHMGVLFGVANQILMAAFGIALTGLIALGYLMWWRRRPAAGASLAP 417 Query: 433 LSAAFMQMSLPQRASVLLLALLLGWSLPLMGTSLLLFLLVDVIRYRRAGR 482 LSAAFMQMSLPQRASVLLLALLLGW+LPLMG SLL+FLLVDVIRYRRAGR Sbjct: 418 LSAAFMQMSLPQRASVLLLALLLGWNLPLMGASLLVFLLVDVIRYRRAGR 467 >ref|YP_001372183.1| putative iron-regulated membrane protein [Ochrobactrum anthropi ATCC 49188] gb|ABS16354.1| putative iron-regulated membrane protein [Ochrobactrum anthropi ATCC 49188] Length = 472 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 254/455 (55%), Positives = 322/455 (70%) Query: 28 QAQAAARRQSATALHALLLRLHFYIGLFVGPFILVAALTGTLYVLTPQIESHLYATQLRN 87 QA+ + + A + RLHFY+GLFVGPFIL+AA+TGTLYVLTPQ+E+++Y QLR Sbjct: 13 QARPNTTSSANSGFQAFITRLHFYVGLFVGPFILIAAVTGTLYVLTPQLENYIYRDQLRT 72 Query: 88 ASQGPAQPLAAQVQAARAFLGPQARLFAVRPAKAQGWNTRVMFTQPGLGDSESRAIFVDP 147 AS G QPLA QV+AA AF+G +LFAVRP+ A GWNTRVMFTQPGLG+SESRAIF+DP Sbjct: 73 ASLGTLQPLADQVKAAEAFIGEGPKLFAVRPSIAPGWNTRVMFTQPGLGESESRAIFIDP 132 Query: 148 VSLQVKGDLIVYGTSGVLPLRTTLDYLHRNLMLGDVGRNYSELAASWLWLGAFGGVWLWW 207 V+L VKGDL+VYGTSG LP R +DYLHRNLMLGD GR YSELAASWLW+ A GG LWW Sbjct: 133 VTLAVKGDLVVYGTSGTLPFRAAIDYLHRNLMLGDFGRYYSELAASWLWIAALGGTLLWW 192 Query: 208 RGRQRRAASAVRAPRPMNARRLHALVGLWIVLGLVFFSATGLTWSRWAGERVSQMRTQLG 267 R+ R + RR H+ VG+WI +GL+F SATG+TWS+ AGER+ Q R +G Sbjct: 193 WNRKIRRKQKQTKNLHLKTRRFHSQVGIWIAVGLLFLSATGMTWSQLAGERIDQFRAAVG 252 Query: 268 WITPSVSTQLQPGAPAMSMGEHADHMAAHGMAMAMPAVDDPARFDMVQSIARAGGIDAAE 327 WITPSVST L + H DH + D + D V A+ G+D+ Sbjct: 253 WITPSVSTVLNKATESSQERAHQDHGGMPMPSGTGDVQDHVGQLDSVYLAAQQAGLDSPM 312 Query: 328 IEIRPPRAAQQAWVVREVDRSWPTQVDTVAIDADRMRITSRADFASFPLIAKLIRWGVDA 387 +EIR PR++ Q W+VRE DRSWPTQVDT+A+D M + SRADF SFPLIAKLIRWG+D Sbjct: 313 LEIRLPRSSDQGWLVREYDRSWPTQVDTIALDPQNMEVISRADFESFPLIAKLIRWGIDL 372 Query: 388 HMGVLFGVANQILMAAFGIALTGLIVLGYVMWWRRRPAAGASLAPLSAAFMQMSLPQRAS 447 HMGVLFGV NQI+MAA G++L +IV GY +WW+RRP AG+ L A++ +++ Q+ Sbjct: 373 HMGVLFGVTNQIVMAALGLSLIVMIVYGYRIWWQRRPPAGSMPRTLIASWRRLTAAQQIG 432 Query: 448 VLLLALLLGWSLPLMGTSLLLFLLVDVIRYRRAGR 482 + + A+ +GW+LPL+G SL+ FLLVD +R+ G+ Sbjct: 433 IAIAAVFVGWTLPLVGISLIAFLLVDSVRWWFGGQ 467 >ref|ZP_06687819.1| PepSY-associated TM helix protein [Achromobacter piechaudii ATCC 43553] gb|EFF75264.1| PepSY-associated TM helix protein [Achromobacter piechaudii ATCC 43553] Length = 474 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 285/468 (60%), Positives = 341/468 (72%), Gaps = 8/468 (1%) Query: 18 MTTHSFQPASQAQAAARRQSATALHALLLRLHFYIGLFVGPFILVAALTGTLYVLTPQIE 77 M+T + A+ A AR + +A AL+ RLHFYIGLFVGPFILVAA+TGTL+VLTPQIE Sbjct: 1 MSTQTLDTAA-AIPRARSAAPSAFLALITRLHFYIGLFVGPFILVAAVTGTLFVLTPQIE 59 Query: 78 SHLYATQLRNASQGPAQPLAAQVQAARAFLGPQARLFAVRPAKAQGWNTRVMFTQPGLGD 137 + LYA QLR S GPAQ LA QVQAA+A +G RLFAVRPA G TRVM+TQ G+GD Sbjct: 60 NLLYAEQLRTTSTGPAQSLARQVQAAQAHIGDGPRLFAVRPAPGPGDTTRVMYTQAGMGD 119 Query: 138 SESRAIFVDPVSLQVKGDLIVYGTSGVLPLRTTLDYLHRNLMLGDVGRNYSELAASWLWL 197 SESRA+FVDPV+L +KGDL+VYGTSG LP RTTLDYLHRNLMLG++GRNYSELAASW+WL Sbjct: 120 SESRALFVDPVTLAIKGDLMVYGTSGTLPFRTTLDYLHRNLMLGELGRNYSELAASWMWL 179 Query: 198 GAFGGVWLWWRGRQRRAASAVRAPRPMNARRLHALVGLWIVLGLVFFSATGLTWSRWAGE 257 GG+ LWW GR+R AA+ R+PR + ARR H L+GLW+ +GL+F SATGLTWS WAG Sbjct: 180 ATLGGLVLWWAGRRRAAATQARSPR-LRARRWHTLLGLWLAVGLIFLSATGLTWSNWAGG 238 Query: 258 RVSQMRTQLGWITPSVSTQL------QPGAPAMSMGEHADHMAAHGMAMAMPAVDDPARF 311 RV Q+R QLGWITP++S +L P + H A M A VD +F Sbjct: 239 RVDQLRAQLGWITPAISLKLPGADSPAPASGGGHAHHHDGMQMAGAMPPAAAPVDVAGQF 298 Query: 312 DMVQSIARAGGIDAAEIEIRPPRAAQQAWVVREVDRSWPTQVDTVAIDADRMRITSRADF 371 D + AR GGID+ ++EIRPPR A QAW+VREVDRSWPTQVDT+AID ITSRADF Sbjct: 299 DRILQTARLGGIDSTQLEIRPPRGAGQAWMVREVDRSWPTQVDTIAIDPATYTITSRADF 358 Query: 372 ASFPLIAKLIRWGVDAHMGVLFGVANQILMAAFGIALTGLIVLGYVMWWRRRPAAGASLA 431 +FPLIAKLIRWGVD HMG+LFG NQ+LM G+ALT +IVLGY MWW RRPAAG + Sbjct: 359 DTFPLIAKLIRWGVDMHMGILFGWPNQLLMGGIGLALTIMIVLGYRMWWLRRPAAGVAGQ 418 Query: 432 PLSAAFMQMSLPQRASVLLLALLLGWSLPLMGTSLLLFLLVDVIRYRR 479 L+ A+ + P R + + +A LGW LPLMG SLL FL++D +R R Sbjct: 419 TLTQAWAALGWPARLAFVAVAAALGWCLPLMGVSLLGFLVIDALRSWR 466 >ref|YP_004481964.1| PepSY-associated TM helix domain-containing protein [Marinomonas posidonica IVIA-Po-181] gb|AEF55045.1| PepSY-associated TM helix domain protein [Marinomonas posidonica IVIA-Po-181] Length = 457 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 235/448 (52%), Positives = 307/448 (68%), Gaps = 3/448 (0%) Query: 37 SATALHALLLRLHFYIGLFVGPFILVAALTGTLYVLTPQIESHLYATQLRNASQGPAQPL 96 S+ AL L+ RLHFY+GLFVGPFI +AALTGTLY+L+PQIE +Y L S+G QPL Sbjct: 10 SSNALLLLITRLHFYVGLFVGPFIFIAALTGTLYILSPQIEQAVYKDVLTTQSRGDYQPL 69 Query: 97 AAQVQAARAFLGPQARLFAVRPAKAQGWNTRVMFTQPGLGDSESRAIFVDPVSLQVKGDL 156 A Q+ AAR+ L LFAVRPA G NTRVMF P + +RA+F+DPV+L +KG+L Sbjct: 70 ANQIAAARSHLTSDLTLFAVRPAPEIGDNTRVMFLDPTARLTGARALFIDPVTLNLKGNL 129 Query: 157 IVYGTSGVLPLRTTLDYLHRNLMLGDVGRNYSELAASWLWLGAFGGVWLWWRGRQRRAAS 216 VYGTSGVLP+RTT+D+ HR L+LG+VGR YSELAASWLW+ A GG++LW++G ++ + Sbjct: 130 PVYGTSGVLPIRTTIDFFHRQLLLGEVGRYYSELAASWLWIAALGGIFLWYKGGKKNQSE 189 Query: 217 AVRAPRPMNARRLHALVGLWIVLGLVFFSATGLTWSRWAGERVSQMRTQLGWITPSVSTQ 276 + RR H +GLWI +GL+F SATGLTWS+WAG + +R +GW+TPSV Sbjct: 190 VASKTAHLRKRRRHYQLGLWIFVGLIFVSATGLTWSKWAGSNIGSLRASIGWVTPSVDLS 249 Query: 277 LQPGAPAMSMGEHADHMAAHGMAMAMPAV---DDPARFDMVQSIARAGGIDAAEIEIRPP 333 L EH DH MA V + FD V AR GIDA +IEI+P Sbjct: 250 LSQHKTNQQSDEHLDHAHHGSSKMATSGVGSHNSDLLFDGVLKAARDAGIDANKIEIKPD 309 Query: 334 RAAQQAWVVREVDRSWPTQVDTVAIDADRMRITSRADFASFPLIAKLIRWGVDAHMGVLF 393 R +AW VRE+DRSWPTQVD+VA+D M +TSRA+F +FPL+AKLIRWG+DAHMGVLF Sbjct: 310 RTGHKAWFVREIDRSWPTQVDSVAVDTRTMTVTSRANFDAFPLVAKLIRWGIDAHMGVLF 369 Query: 394 GVANQILMAAFGIALTGLIVLGYVMWWRRRPAAGASLAPLSAAFMQMSLPQRASVLLLAL 453 GV NQIL+ FG+++ +I+ GY MWW RRP AG++ PL A+ +++ Q+ +A+ Sbjct: 370 GVPNQILLTLFGLSVCMMIIWGYKMWWIRRPNAGSTSKPLLQAWSKLTSGQKVMTFGVAI 429 Query: 454 LLGWSLPLMGTSLLLFLLVDVIRYRRAG 481 LG S+P+MG SL+LFLL+D R++ A Sbjct: 430 ALGLSMPVMGVSLILFLLIDAWRWKNAA 457 >ref|YP_003260190.1| PepSY-associated TM helix domain protein [Pectobacterium wasabiae WPP163] gb|ACX88583.1| PepSY-associated TM helix domain protein [Pectobacterium wasabiae WPP163] Length = 507 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 258/465 (55%), Positives = 316/465 (67%), Gaps = 33/465 (7%) Query: 40 ALHALLLRLHFYIGLFVGPFILVAALTGTLYVLTPQIESHLYATQLRNASQGPAQPLAAQ 99 A+ ALL+RLHFYIG+FVGPFI VAALTGTLYVLTPQIE+ LY+ QL SQG LA Q Sbjct: 37 AIVALLIRLHFYIGIFVGPFIFVAALTGTLYVLTPQIENRLYSHQLFTESQGTPHSLAEQ 96 Query: 100 VQAARAFLGPQ--ARLFAVRPAKAQGWNTRVMFTQPGLGDSESRAIFVDPVSLQVKGDLI 157 + AA+A L A+L A+RPA G TRVMF P LG SESRA+F+DPVSL+ +G I Sbjct: 97 IHAAQAELAHHQGAKLLAIRPAPDVGETTRVMFALPELGPSESRAVFIDPVSLENRGSEI 156 Query: 158 VYGTSGVLPLRTTLDYLHRNLMLGDVGRNYSELAASWLWLGAFGGVWLWWRGRQRRAASA 217 VYGTSG+LP RT LDYLHR L+LGDVGRNYSELAASWLW+ A GG+ +WW RQ +A Sbjct: 157 VYGTSGILPFRTWLDYLHRGLLLGDVGRNYSELAASWLWVAALGGIVIWWSTRQMTSAGK 216 Query: 218 VR--------APRPMNARRLHALVGLWIVLGLVFFSATGLTWSRWAGERVSQMRTQLGWI 269 R A + R HA +GL +VLGL+FFS TGLTWS+WAG +S RT LGW Sbjct: 217 RRKLKNSQTTAAKTQRLRHWHATMGLSLVLGLLFFSVTGLTWSQWAGSNISVARTSLGWQ 276 Query: 270 TPSVSTQLQPGAP------------AMSMGEHADHMAAHGMAMAMPAVDD--PARFDMVQ 315 TPSV TQL AP M+ EHA+H A+ M M VDD A FD V Sbjct: 277 TPSVKTQLP--APMSHHDMMHGHDMTMTTDEHAEHHAS----MPMGDVDDYPAALFDEVL 330 Query: 316 SIARAGGIDAAEIEIRPPRAAQQAWVVREVDRSWPTQVDTVAIDADRMRITSRADFASFP 375 AR GIDA +IEIRP +AW V E+DRSWPTQVD V+++ D + I + DF +FP Sbjct: 331 IAARHAGIDANKIEIRPATKPHRAWTVSEIDRSWPTQVDAVSVNPDTLDIVDKTDFNTFP 390 Query: 376 LIAKLIRWGVDAHMGVLFGVANQILMAAFGIALTGLIVLGYVMWWRRRPAAGASLAP--- 432 L AKL RWGVDAHMGVLFG+ NQ+++AAFG+ L +IV GY MWW RRP + S+ P Sbjct: 391 LAAKLTRWGVDAHMGVLFGLPNQLILAAFGLGLCAMIVWGYRMWWIRRPKSRHSVNPVNT 450 Query: 433 LSAAFMQMSLPQRASVLLLALLLGWSLPLMGTSLLLFLLVDVIRY 477 L+AA + + + QR ++++ LLL SLP+MG SLL+FLL+D +R+ Sbjct: 451 LTAALLVIPVFQRVLIVIITLLLAVSLPVMGISLLIFLLIDTVRW 495