BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4769.p (248 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001351719.1| hypothetical protein mma_0029 [Janthinobacte... 394 e-108 ref|YP_004041044.1| PAS/PAC sensor-containing diguanylate cyclas... 380 e-103 ref|YP_003052491.1| PAS/PAC sensor-containing diguanylate cyclas... 379 e-103 ref|YP_003047638.1| PAS/PAC sensor-containing diguanylate cyclas... 375 e-102 emb|CAL62813.2| Conserved hypothetical protein; putative GGDEF, ... 367 1e-99 >ref|YP_001351719.1| hypothetical protein mma_0029 [Janthinobacterium sp. Marseille] gb|ABR91096.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 313 Score = 394 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 178/244 (72%), Positives = 217/244 (88%) Query: 5 IQEQMEPDSAVYKTLLESTKAIPWKIDWSTMQFAYIGPQIEQLLGWTPESWKTADDWAMR 64 I +MEPDSAVYKTLLESTKAIPWKIDW+TMQF YIGPQIE +LGW +SW + +DWA R Sbjct: 4 IAPKMEPDSAVYKTLLESTKAIPWKIDWATMQFTYIGPQIEGVLGWPQDSWVSVNDWASR 63 Query: 65 IHAEDREAVVNFCISQSKAGADHEADYRALTRDGEHIWIRDVVHVVRNPDGSPNALIGFM 124 IH ++R+A+VNFC++QS+AGADHEADYRAL ++GE++WIRDVVHV R PDGS ++LIGFM Sbjct: 64 IHPDERDAIVNFCVAQSQAGADHEADYRALAQNGEYVWIRDVVHVARKPDGSVDSLIGFM 123 Query: 125 FDITERKKTEARLVELQKELEALSYRDGLTNVANRRMFDSALEVEWANAVNTRAPLSMIM 184 FDI ERKKTEA+L++LQKELE LS++DGLT VANRRMFDS LE+EWANA+N++ PLS+I+ Sbjct: 124 FDINERKKTEAKLIDLQKELETLSFKDGLTGVANRRMFDSVLELEWANAMNSKRPLSIIL 183 Query: 185 LDIDYFKQYNDHYGHIRGDECLKQVAQLLSQSATRSRDFFARYGGEEFVLILPDCDEKAA 244 LDIDYFKQYNDHYGHI+GD CLKQVA+ L+ +A R RDFF R+GGEEF+LILP+ +EK+A Sbjct: 184 LDIDYFKQYNDHYGHIQGDHCLKQVAKTLNNAAIRQRDFFGRFGGEEFILILPETNEKSA 243 Query: 245 LQVA 248 L VA Sbjct: 244 LTVA 247 >ref|YP_004041044.1| PAS/PAC sensor-containing diguanylate cyclase [Methylovorus sp. MP688] gb|ADQ85808.1| diguanylate cyclase with PAS/PAC sensor [Methylovorus sp. MP688] Length = 323 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 178/248 (71%), Positives = 210/248 (84%), Gaps = 1/248 (0%) Query: 1 MSNSIQEQMEPDSAVYKTLLESTKAIPWKIDWSTMQFAYIGPQIEQLLGWTPESWKTADD 60 MSN ++ E DS VYKTLLESTKAIPWKIDW TM F+YIGPQIE LLGW PESW +A D Sbjct: 11 MSNPVKPP-EEDSTVYKTLLESTKAIPWKIDWRTMTFSYIGPQIETLLGWAPESWVSAGD 69 Query: 61 WAMRIHAEDREAVVNFCISQSKAGADHEADYRALTRDGEHIWIRDVVHVVRNPDGSPNAL 120 WA R+H EDRE VV++C+SQS++G DHEADYRALT+DGE+IWIRDVVHV+RN DG AL Sbjct: 70 WAARMHPEDREWVVDYCVSQSRSGIDHEADYRALTKDGEYIWIRDVVHVLRNADGEVEAL 129 Query: 121 IGFMFDITERKKTEARLVELQKELEALSYRDGLTNVANRRMFDSALEVEWANAVNTRAPL 180 IGFMFDI+ERKKTE +L++LQKELE LS++DGLT VANRRMFDS ++VEW NA PL Sbjct: 130 IGFMFDISERKKTEEKLLQLQKELEELSFQDGLTRVANRRMFDSIIQVEWTNARRNSQPL 189 Query: 181 SMIMLDIDYFKQYNDHYGHIRGDECLKQVAQLLSQSATRSRDFFARYGGEEFVLILPDCD 240 S+IMLDIDYFKQYNDHYGHI+GD+CLKQVA++LS + TR+ DFFAR+GGEEFVL+LP D Sbjct: 190 SLIMLDIDYFKQYNDHYGHIQGDDCLKQVAEILSSAGTRANDFFARFGGEEFVLVLPQTD 249 Query: 241 EKAALQVA 248 AA ++A Sbjct: 250 SDAAKKIA 257 >ref|YP_003052491.1| PAS/PAC sensor-containing diguanylate cyclase [Methylovorus glucosetrophus SIP3-4] gb|ACT51964.1| diguanylate cyclase with PAS/PAC sensor [Methylovorus glucosetrophus SIP3-4] Length = 323 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 178/248 (71%), Positives = 209/248 (84%), Gaps = 1/248 (0%) Query: 1 MSNSIQEQMEPDSAVYKTLLESTKAIPWKIDWSTMQFAYIGPQIEQLLGWTPESWKTADD 60 MSN + E DS VYKTLLESTKAIPWKIDW TM F+YIGPQIE LLGW PESW +A D Sbjct: 11 MSNPVTPP-EEDSTVYKTLLESTKAIPWKIDWRTMTFSYIGPQIETLLGWAPESWVSAGD 69 Query: 61 WAMRIHAEDREAVVNFCISQSKAGADHEADYRALTRDGEHIWIRDVVHVVRNPDGSPNAL 120 WA R+H EDRE VV++C+SQS++G DHEADYRALT+DGE+IWIRDVVHV+RN DG AL Sbjct: 70 WAARMHPEDREWVVDYCVSQSRSGIDHEADYRALTKDGEYIWIRDVVHVLRNADGEVEAL 129 Query: 121 IGFMFDITERKKTEARLVELQKELEALSYRDGLTNVANRRMFDSALEVEWANAVNTRAPL 180 IGFMFDI+ERKKTE +L++LQKELE LS++DGLT VANRRMFDS ++VEW NA PL Sbjct: 130 IGFMFDISERKKTEEKLLQLQKELEELSFQDGLTRVANRRMFDSIIQVEWTNARRNSQPL 189 Query: 181 SMIMLDIDYFKQYNDHYGHIRGDECLKQVAQLLSQSATRSRDFFARYGGEEFVLILPDCD 240 S+IMLDIDYFKQYNDHYGHI+GD+CLKQVA++LS + TR+ DFFAR+GGEEFVL+LP D Sbjct: 190 SLIMLDIDYFKQYNDHYGHIQGDDCLKQVAEILSSAGTRANDFFARFGGEEFVLVLPQTD 249 Query: 241 EKAALQVA 248 AA ++A Sbjct: 250 SDAAKKIA 257 >ref|YP_003047638.1| PAS/PAC sensor-containing diguanylate cyclase [Methylotenera mobilis JLW8] gb|ACT47111.1| diguanylate cyclase with PAS/PAC sensor [Methylotenera mobilis JLW8] Length = 310 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 177/248 (71%), Positives = 207/248 (83%), Gaps = 1/248 (0%) Query: 1 MSNSIQEQMEPDSAVYKTLLESTKAIPWKIDWSTMQFAYIGPQIEQLLGWTPESWKTADD 60 M+NS + E DSAVYKTLLESTKAIPWKIDW+T+QF+YIGPQIEQLLGWTP SW T +D Sbjct: 1 MTNS-NDNFEADSAVYKTLLESTKAIPWKIDWNTLQFSYIGPQIEQLLGWTPASWVTVED 59 Query: 61 WAMRIHAEDREAVVNFCISQSKAGADHEADYRALTRDGEHIWIRDVVHVVRNPDGSPNAL 120 WA R+H EDR VV++C++QSK+G DHEADYRALT+DGE++WIRDVVHVVRN +G AL Sbjct: 60 WASRMHPEDRAWVVDYCVAQSKSGTDHEADYRALTKDGEYVWIRDVVHVVRNAEGMVEAL 119 Query: 121 IGFMFDITERKKTEARLVELQKELEALSYRDGLTNVANRRMFDSALEVEWANAVNTRAPL 180 IGFMFDITERK TE +L+ LQKELE LS++D LT V NRRMFDS +EVEWANA PL Sbjct: 120 IGFMFDITERKNTEQKLIVLQKELEELSFKDALTGVYNRRMFDSVMEVEWANAKRNHQPL 179 Query: 181 SMIMLDIDYFKQYNDHYGHIRGDECLKQVAQLLSQSATRSRDFFARYGGEEFVLILPDCD 240 S++MLDIDYFKQYNDHYGHI GDECLK VA+ LS TRSRDFFAR+GGEEF+++LP+ D Sbjct: 180 SLLMLDIDYFKQYNDHYGHIHGDECLKLVAKALSNVGTRSRDFFARFGGEEFIVVLPETD 239 Query: 241 EKAALQVA 248 AA +A Sbjct: 240 AAAANMIA 247 >emb|CAL62813.2| Conserved hypothetical protein; putative GGDEF, PAS/PAC domains [Herminiimonas arsenicoxydans] Length = 310 Score = 367 bits (941), Expect = 1e-99, Method: Composition-based stats. Identities = 171/237 (72%), Positives = 199/237 (83%) Query: 12 DSAVYKTLLESTKAIPWKIDWSTMQFAYIGPQIEQLLGWTPESWKTADDWAMRIHAEDRE 71 D AVYKTLLESTKAIPWKIDW M FAYIGPQIE LLGW+ SW +A DWA R+H EDR Sbjct: 8 DHAVYKTLLESTKAIPWKIDWKNMTFAYIGPQIEALLGWSSSSWVSAQDWADRMHPEDRA 67 Query: 72 AVVNFCISQSKAGADHEADYRALTRDGEHIWIRDVVHVVRNPDGSPNALIGFMFDITERK 131 VVNFC++QSK G DHEADYRALT+DG ++WIRDVVHV+RN DG ALIGFMFDI+ERK Sbjct: 68 WVVNFCVAQSKDGTDHEADYRALTKDGNYVWIRDVVHVMRNADGEVEALIGFMFDISERK 127 Query: 132 KTEARLVELQKELEALSYRDGLTNVANRRMFDSALEVEWANAVNTRAPLSMIMLDIDYFK 191 KTEA+L++LQKELE LS++DGLT VANRRMFDS + EWANA PLS+IMLDIDYFK Sbjct: 128 KTEAKLIDLQKELETLSFKDGLTGVANRRMFDSIMAAEWANAKLNHQPLSVIMLDIDYFK 187 Query: 192 QYNDHYGHIRGDECLKQVAQLLSQSATRSRDFFARYGGEEFVLILPDCDEKAALQVA 248 QYNDHYGHI+GD+CLK+VA +LS + RSRDFFAR+GGEEF+L+LP+ DE A+ +A Sbjct: 188 QYNDHYGHIQGDDCLKRVANILSSATRRSRDFFARFGGEEFILVLPETDELNAINIA 244