BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4765.p (307 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775960.1| LysR family transcription regulator protein ... 547 e-154 gb|EGW60845.1| transcriptional regulator, LysR family [Dechloros... 347 2e-93 ref|YP_003752417.1| transcription regulator protein, HTH-type [R... 344 1e-92 ref|NP_519850.1| transcription regulator protein [Ralstonia sola... 344 1e-92 emb|CCA81905.1| putative transcription regulator protein,HTH-typ... 344 1e-92 >ref|YP_003775960.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64052.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 547 bits (1409), Expect = e-154, Method: Composition-based stats. Identities = 281/307 (91%), Positives = 297/307 (96%) Query: 1 MNQLDTLKIFQRVAELASFSGAARQLGLPNASVSLAVQQLEQMLGTRLLQRTTRRVQLTA 60 M+QLDTL+IFQRVAELASFSGAARQLGLPNASVSLA+QQLEQMLGTRLLQRTTRRVQLTA Sbjct: 1 MHQLDTLRIFQRVAELASFSGAARQLGLPNASVSLAIQQLEQMLGTRLLQRTTRRVQLTA 60 Query: 61 DGEAFYRRSQDLLDEFESLRGMFRAGGQPLSGKLRVDMSSAMAREVVLPALPTFLAQHPQ 120 DGEAFYRRS++LLDEFESLRGMF G Q LSG+LRVDMSSAMAREVVLPALP+FL +HPQ Sbjct: 61 DGEAFYRRSRELLDEFESLRGMFHDGAQALSGRLRVDMSSAMAREVVLPALPSFLDKHPQ 120 Query: 121 LEIELSASDRRVDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQINCASAAYLKRHGTPRT 180 LEIELSASDRRVDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQINCAS YL+R+GTP+T Sbjct: 121 LEIELSASDRRVDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQINCASPEYLRRYGTPQT 180 Query: 181 LEDLAHHQLVHYRQVLGGRSPGWEWFDGTQTRTLPMAGSVTVNSTETYYAACLAGLGLIQ 240 LEDLA H+LVHYRQVLGGRSPGWEWFDG QTR+LPMAGS+TVNSTETYYAACLAGLGLIQ Sbjct: 181 LEDLAQHRLVHYRQVLGGRSPGWEWFDGQQTRSLPMAGSITVNSTETYYAACLAGLGLIQ 240 Query: 241 LPLVGAQKRQMLDGGHVVEVLPQYRPAPMPINLLYASRRHVPARLAEFMDWLHALIFPLT 300 LPLVGAQKRQMLDGGHVVEVLPQYRPAPMP++LLYASRRHVPARLA FMDWLHALIFPLT Sbjct: 241 LPLVGAQKRQMLDGGHVVEVLPQYRPAPMPVSLLYASRRHVPARLAGFMDWLHALIFPLT 300 Query: 301 QEGGLTR 307 QEGGLTR Sbjct: 301 QEGGLTR 307 >gb|EGW60845.1| transcriptional regulator, LysR family [Dechlorosoma suillum PS] Length = 313 Score = 347 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 182/293 (62%), Positives = 228/293 (77%), Gaps = 3/293 (1%) Query: 1 MNQLDTLKIFQRVAELASFSGAARQLGLPNASVSLAVQQLEQMLGTRLLQRTTRRVQLTA 60 M+QLD ++IF RVAELASF+ AA LGLP AS+S AVQ+LE LG RLL RTTRRVQLT Sbjct: 1 MDQLDAMQIFLRVAELASFTQAADSLGLPKASISAAVQRLESQLGARLLHRTTRRVQLTQ 60 Query: 61 DGEAFYRRSQDLLDEFESLRGMFRAGGQPLSGKLRVDMSSAMAREVVLPALPTFLAQHPQ 120 DG A+Y RS+DLL + E L+ MFR LSG+LRVDM + AR V+P LP FL +HP Sbjct: 61 DGLAYYERSRDLLADMEELQTMFRRDEAQLSGRLRVDMPAGTARHAVMPRLPEFLERHPG 120 Query: 121 LEIELSASDRRVDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQINCASAAYLKRHGTPRT 180 LE+E+S++DRRVDLV EGFDCVLR G L DSSLVARP+G L Q+N AS AYL+RHGTP + Sbjct: 121 LEVEVSSTDRRVDLVREGFDCVLRVGALGDSSLVARPLGQLRQLNLASPAYLERHGTPHS 180 Query: 181 LEDLAHHQLVHYRQVLGGRSPGWEWFDGT-QTRTLPMAGSVTVNSTETYYAACLAGLGLI 239 LEDLA H+L+HY +LGG+SPG+E+ DG + R +PMAG+VTVN+++ Y AACLAGLGLI Sbjct: 181 LEDLAAHRLIHYVPILGGKSPGFEYVDGAGELRRIPMAGAVTVNNSDAYTAACLAGLGLI 240 Query: 240 QLPLVGAQKRQMLDGGHVVEVLPQYRPAPMPINLLYASRRHVPARLAEFMDWL 292 Q+PL G Q +L+ G ++ VLP++ PMP++LLYA+RRH+P R+ FMDWL Sbjct: 241 QVPLAGMQA--LLEAGLLLPVLPEFNAPPMPVHLLYANRRHLPRRVRVFMDWL 291 >ref|YP_003752417.1| transcription regulator protein, HTH-type [Ralstonia solanacearum PSI07] emb|CBJ51135.1| putative transcription regulator protein, HTH-type [Ralstonia solanacearum PSI07] Length = 306 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 178/303 (58%), Positives = 227/303 (74%), Gaps = 2/303 (0%) Query: 2 NQLDTLKIFQRVAELASFSGAARQLGLPNASVSLAVQQLEQMLGTRLLQRTTRRVQLTAD 61 N L+ ++IF RVAELASF+ AA LG+P + S+AVQQLE +LGTRLL RTTR+VQLT D Sbjct: 3 NPLEAMQIFVRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVQLTQD 62 Query: 62 GEAFYRRSQDLLDEFESLRGMFRAGGQPLSGKLRVDMSSAMAREVVLPALPTFLAQHPQL 121 G AF+ RSQDLL + E L+ MFR Q L G+LRVDM +AR++V+PALP FL HPQL Sbjct: 63 GRAFFERSQDLLADMEELQTMFRQSPQALRGRLRVDMPVGVARKIVIPALPAFLDAHPQL 122 Query: 122 EIELSASDRRVDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQINCASAAYLKRHGTPRTL 181 EIELS++DRRVDLV EGFDCVLR GTL DSSL+ARP+G L Q+NCAS AYL R+G PR+L Sbjct: 123 EIELSSTDRRVDLVREGFDCVLRIGTLGDSSLIARPLGQLPQMNCASPAYLARYGMPRSL 182 Query: 182 EDLAHHQLVHYRQVLGGRSPGWEWFDGTQTRTLPMAGSVTVNSTETYYAACLAGLGLIQL 241 +DL HH++VHY Q LG ++PGWE+ +T PM G VTV++ E+Y AAC AGLG+IQ Sbjct: 183 DDLDHHRIVHYVQTLGTKAPGWEYRVDGRTAYRPMQGVVTVSTAESYEAACQAGLGMIQA 242 Query: 242 PLVGAQKRQMLDGGHVVEVLPQYRPAPMPINLLYASRRHVPARLAEFMDWLHALIFPLTQ 301 P+ G + + G +VEVLPQYRPAPMP++L+Y +RR++P R+ FM W+ + P + Sbjct: 243 PVSGLAPQ--IARGELVEVLPQYRPAPMPVSLVYPNRRNLPVRVQVFMTWVAEQLAPYLE 300 Query: 302 EGG 304 G Sbjct: 301 PIG 303 >ref|NP_519850.1| transcription regulator protein [Ralstonia solanacearum GMI1000] emb|CAD15431.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 306 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 178/297 (59%), Positives = 227/297 (76%), Gaps = 2/297 (0%) Query: 2 NQLDTLKIFQRVAELASFSGAARQLGLPNASVSLAVQQLEQMLGTRLLQRTTRRVQLTAD 61 N L+T++IF RVAELASF+ AA LG+P + S+AVQQLE +LGTRLL RTTR+VQLT D Sbjct: 3 NPLETMQIFIRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVQLTQD 62 Query: 62 GEAFYRRSQDLLDEFESLRGMFRAGGQPLSGKLRVDMSSAMAREVVLPALPTFLAQHPQL 121 G+AF+ RSQDLL + E L+ MFR Q L G+LRVDM + +AR+VV+PALP FL HPQL Sbjct: 63 GQAFFERSQDLLADMEELQTMFRQSPQALRGRLRVDMPAGVARKVVIPALPAFLDAHPQL 122 Query: 122 EIELSASDRRVDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQINCASAAYLKRHGTPRTL 181 EIELS++DRRVDLV EGFDCVLR GTL DSSL+ARP+G L Q+NCAS AY+ R+G PR+L Sbjct: 123 EIELSSTDRRVDLVREGFDCVLRIGTLGDSSLIARPLGQLPQMNCASPAYIARYGMPRSL 182 Query: 182 EDLAHHQLVHYRQVLGGRSPGWEWFDGTQTRTLPMAGSVTVNSTETYYAACLAGLGLIQL 241 +DL HH+LVHY Q LG ++PGWE+ +T PM G VTV++ E+Y AAC AGLG+IQ Sbjct: 183 DDLDHHRLVHYVQTLGTKAPGWEYRIDGRTAHRPMPGVVTVSTAESYEAACQAGLGIIQA 242 Query: 242 PLVGAQKRQMLDGGHVVEVLPQYRPAPMPINLLYASRRHVPARLAEFMDWLHALIFP 298 P+ + + G +VEVLPQYRPAPMP++L+Y +RR++P R+ FM W+ + P Sbjct: 243 PV--SVLAPQVARGELVEVLPQYRPAPMPVSLVYPNRRNLPVRVQVFMHWVAEQLAP 297 >emb|CCA81905.1| putative transcription regulator protein,HTH-type [blood disease bacterium R229] Length = 306 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 178/303 (58%), Positives = 227/303 (74%), Gaps = 2/303 (0%) Query: 2 NQLDTLKIFQRVAELASFSGAARQLGLPNASVSLAVQQLEQMLGTRLLQRTTRRVQLTAD 61 N L+ ++IF RVAELASF+ AA LG+P + S+AVQQLE +LGTRLL RTTR+VQLT D Sbjct: 3 NPLEAMQIFVRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVQLTQD 62 Query: 62 GEAFYRRSQDLLDEFESLRGMFRAGGQPLSGKLRVDMSSAMAREVVLPALPTFLAQHPQL 121 G AF+ RSQDLL + E L+ MFR Q L G+LRVDM +AR++V+PALP FL HPQL Sbjct: 63 GRAFFERSQDLLADMEELQTMFRQSPQALRGRLRVDMPVGVARKIVIPALPAFLDAHPQL 122 Query: 122 EIELSASDRRVDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQINCASAAYLKRHGTPRTL 181 EIELS++DRRVDLV EGFDCVLR GTL DSSL+ARP+G L Q+NCAS AYL R+G PR+L Sbjct: 123 EIELSSTDRRVDLVREGFDCVLRIGTLGDSSLIARPLGQLPQMNCASPAYLARYGMPRSL 182 Query: 182 EDLAHHQLVHYRQVLGGRSPGWEWFDGTQTRTLPMAGSVTVNSTETYYAACLAGLGLIQL 241 +DL HH++VHY Q LG ++PGWE+ +T PM G VTV++ E+Y AAC AGLG+IQ Sbjct: 183 DDLDHHRIVHYVQTLGTKAPGWEYRVDGRTAYRPMQGVVTVSTAESYEAACQAGLGMIQA 242 Query: 242 PLVGAQKRQMLDGGHVVEVLPQYRPAPMPINLLYASRRHVPARLAEFMDWLHALIFPLTQ 301 P+ G + + G +VEVLPQYRPAPMP++L+Y +RR++P R+ FM W+ + P + Sbjct: 243 PVSGLAPQ--IARGELVEVLPQYRPAPMPVSLVYPNRRNLPVRVQVFMTWVTEQLAPYLE 300 Query: 302 EGG 304 G Sbjct: 301 PIG 303