BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4760.p (987 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775963.1| EAL domain-containing protein [Herbaspirillu... 1480 0.0 ref|YP_001890385.1| PAS/PAC/Chase sensor-containing diguanylate ... 1169 0.0 ref|YP_524490.1| PAS/PAC and Chase sensor-containing diguanylate... 1075 0.0 ref|YP_284581.1| diguanylate cyclase/phosphodiesterase with PAS/... 783 0.0 ref|YP_001859971.1| diguanylate cyclase/phosphodiesterase with P... 778 0.0 >ref|YP_003775963.1| EAL domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ64055.1| EAL domain containing protein [Herbaspirillum seropedicae SmR1] Length = 1036 Score = 1480 bits (3831), Expect = 0.0, Method: Composition-based stats. Identities = 752/886 (84%), Positives = 799/886 (90%), Gaps = 12/886 (1%) Query: 110 GLDQ-KKPTLISATEYLVVAGPHTMAAISGKVKLDLDADGQGQPSFLLYLPIYARGMPQS 168 G DQ P SA E +G MA ISGKV++ L ADGQ P+F++YLP+Y RG P + Sbjct: 155 GFDQWSDPVRRSAMEKARDSG---MATISGKVEV-LAADGQRYPTFMMYLPLYERGKPPT 210 Query: 169 TIAERRASLIGWVHAVFRMSDVIASLYGEQPMGVAFAIYDGVEPSTDALLYHSATGLDQK 228 TIA+RRASL+GWVHA FRMSDVIASLYGE + F++YDGV+ + ALLY S + Sbjct: 211 TIAQRRASLVGWVHATFRMSDVIASLYGENSHTIVFSLYDGVQATPQALLYQSRQHEEAP 270 Query: 229 KPTLISATEYLVVA-------MNTIDDFTTRFGRNAELQTALTGVGLSMLLALLAWLLMS 281 + T +SA EY+VV + T F +FGRNAE A TG+ +S+ LALLAWL++S Sbjct: 271 QATRLSADEYVVVGNHNWTLTLRTNAAFHAQFGRNAEPLIATTGIAMSLSLALLAWLMVS 330 Query: 282 SRRRAIRLAKKMTVELRASEEQFRAIADCTVNWEVWWGLDGRPRWINHAVRDYTGYTVEE 341 SR RA+RLA+KMT ELRASEEQFRAIADCTVNWEVWWGLDGRPRWINHAV DYTGYTVEE Sbjct: 331 SRVRAVRLAQKMTAELRASEEQFRAIADCTVNWEVWWGLDGRPRWINHAVLDYTGYTVEE 390 Query: 342 CLSMPDFIGSIVHPDDERRIRAELARCMDGQKREDVEFRCVRKDGTVFWLSLSSAPIADA 401 CL+M DFIG+I HP+DE RIRAELARCMDGQKREDVE RCVRKDG+VFWL+LS API DA Sbjct: 391 CLAMDDFIGTIAHPEDEPRIRAELARCMDGQKREDVELRCVRKDGSVFWLALSCAPIHDA 450 Query: 402 QGSFTGFRTSARDITDRKQIEAELRISAVAFDSREGMLITDANSKILRVNKAFTEITGYT 461 QG FTGFRTS+RDITDRKQIEAELRISAVAFDSREGMLITDANSKILRVNKAFTEITGY+ Sbjct: 451 QGRFTGFRTSSRDITDRKQIEAELRISAVAFDSREGMLITDANSKILRVNKAFTEITGYS 510 Query: 462 AEEIVGKHPNLLRSDRHGPAFFQEMRESVRRFGKWQGEIWDRRKNGEVYPEWLTISAVKN 521 AEEIVGKHPNLLRSDRHGPAFFQEMRES+RRFGKWQGEIWDRRKNGEVYPEWLTISAVKN Sbjct: 511 AEEIVGKHPNLLRSDRHGPAFFQEMRESIRRFGKWQGEIWDRRKNGEVYPEWLTISAVKN 570 Query: 522 KDNQVTHYVSTHHDISDRKLAEERIRELAFFDALTRLPNRTLLLDRLKQAIALSLRTRTC 581 KD QVTHYVSTHHDISDRKLAEERIRELAFFDALTRLPNRTLLLDRLKQAIALSLRT+TC Sbjct: 571 KDQQVTHYVSTHHDISDRKLAEERIRELAFFDALTRLPNRTLLLDRLKQAIALSLRTKTC 630 Query: 582 GALLFIDLDHFKTLNDTVGHEKGDTLLKQVAQRLLANVRENDTVARVGGDEFVVVLEGLN 641 ALLFIDLDHFKTLNDT+GHEKGDTLLKQVAQRLLANVRENDTVARVGGDEFVVVLEGLN Sbjct: 631 AALLFIDLDHFKTLNDTIGHEKGDTLLKQVAQRLLANVRENDTVARVGGDEFVVVLEGLN 690 Query: 642 DTQQEAATQTRTIGEKILAALGQTYQLDEVEYRTTASIGATVFLGRAASVDELMKQADLA 701 + QQEAATQTR IGEKIL ALG TYQLD+VEYRTTASIGATVFLGRAASVDELMKQADLA Sbjct: 691 ELQQEAATQTRAIGEKILTALGSTYQLDDVEYRTTASIGATVFLGRAASVDELMKQADLA 750 Query: 702 MYKAKETGRNALRFFDPAMQTAVLERATLEAGLRKAIEGNQLLLHYQPQVVEGGRVTGAE 761 MYKAKETGRNALRFFDPAMQTAVLERATLEAGLRKAI+GNQLLLHYQPQVVEGGRVTGAE Sbjct: 751 MYKAKETGRNALRFFDPAMQTAVLERATLEAGLRKAIDGNQLLLHYQPQVVEGGRVTGAE 810 Query: 762 VLVRWQHPQRGMVPPGDFIPLAEETGLILSLGNWVLETACTQLATWAKRPRMAELSIAVN 821 VLVRWQHPQRGMVPPGDFIPLAEETGLILSLGNWVLETAC QLATWA +P+MA+LSIAVN Sbjct: 811 VLVRWQHPQRGMVPPGDFIPLAEETGLILSLGNWVLETACRQLATWAAQPQMADLSIAVN 870 Query: 822 VSAPQLREHDFVQTVLDIIDRTGANPRRLKLELTESLLVDNVEDIIQKMFALKAYGVEFS 881 VSAPQLRE DFVQTVLD I+RTGANPRRLKLELTESLLVDNVEDIIQKMFALKAYGVEFS Sbjct: 871 VSAPQLREPDFVQTVLDTIERTGANPRRLKLELTESLLVDNVEDIIQKMFALKAYGVEFS 930 Query: 882 LDDFGTGYSSLSYLKRLPLNQLKIDQSFVRDVLIDPNDASIAKTIVNLAQSLGLGVIAEG 941 LDDFGTGYSSLSYLKRLPLNQLKIDQSFVRDVLIDPNDASIAKTIVNLAQSLGLGVIAEG Sbjct: 931 LDDFGTGYSSLSYLKRLPLNQLKIDQSFVRDVLIDPNDASIAKTIVNLAQSLGLGVIAEG 990 Query: 942 VETDAQRSFLADAGCHAYQGYYFCRPVTVEAFEKFAQDRDLHISVA 987 VETDAQRSFLADAGCHAYQGY+FCRPVTVEAFEKFAQ+ D S A Sbjct: 991 VETDAQRSFLADAGCHAYQGYFFCRPVTVEAFEKFAQEFDPQFSAA 1036 Score = 129 bits (324), Expect = 3e-27, Method: Composition-based stats. Identities = 64/109 (58%), Positives = 82/109 (75%), Gaps = 1/109 (0%) Query: 20 AAISGKVKLDLDADGQGQPSFLMYLPIYARGMPQSTIAERRASLIGWVHASFRMSDVIAS 79 A ISGKV++ L ADGQ P+F+MYLP+Y RG P +TIA+RRASL+GWVHA+FRMSDVIAS Sbjct: 177 ATISGKVEV-LAADGQRYPTFMMYLPLYERGKPPTTIAQRRASLVGWVHATFRMSDVIAS 235 Query: 80 LYGEQPMGVAFAIYDGVEPSTDALLYHSATGLDQKKPTLISATEYLVVA 128 LYGE + F++YDGV+ + ALLY S + + T +SA EY+VV Sbjct: 236 LYGENSHTIVFSLYDGVQATPQALLYQSRQHEEAPQATRLSADEYVVVG 284 >ref|YP_001890385.1| PAS/PAC/Chase sensor-containing diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans PsJN] gb|ACD21014.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Burkholderia phytofirmans PsJN] Length = 1037 Score = 1169 bits (3023), Expect = 0.0, Method: Composition-based stats. Identities = 586/862 (67%), Positives = 692/862 (80%), Gaps = 9/862 (1%) Query: 133 MAAISGKVKLDLDADGQGQPSFLLYLPIYARGMPQSTIAERRASLIGWVHAVFRMSDVIA 192 MA +SGKV+L +D+ G +P F++YLPIYARG PQ ++A+RRA L+GWV+A FRM DVIA Sbjct: 175 MATLSGKVRLSVDS-GNARPGFIMYLPIYARGQPQDSVAQRRAHLVGWVYASFRMHDVIA 233 Query: 193 SLYGEQPMGVAFAIYDGVEPSTDALLYHSATGLDQKKPTLISATEYLVV-------AMNT 245 SLYGEQP G+ AIYDGVE S ALL+ + + T ++A EYLVV +MN Sbjct: 234 SLYGEQPPGLTIAIYDGVETSAAALLHKTPEAPGHHRVTDMAANEYLVVGGHDWTLSMNA 293 Query: 246 IDDFTTRFGRNAELQTALTGVGLSMLLALLAWLLMSSRRRAIRLAKKMTVELRASEEQFR 305 DDF RFGRNA L A TG GLS+LLALL WL+M+ R RA+RLA MT ELR +EE+FR Sbjct: 294 QDDFKARFGRNAALPIASTGTGLSLLLALLTWLMMTGRGRAMRLASAMTKELRENEEKFR 353 Query: 306 AIADCTVNWEVWWGLDGRPRWINHAVRDYTGYTVEECLSMPDFIGSIVHPDDERRIRAEL 365 AIADCTVNWE+WWG DG+PRWIN AV Y GYTV+EC+++PDF G++++P D R+ E Sbjct: 354 AIADCTVNWEIWWGTDGKPRWINSAVEAYIGYTVDECMALPDFAGTVIYPADIPRVAPEF 413 Query: 366 ARCMDGQKREDVEFRCVRKDGTVFWLSLSSAPIADAQGSFTGFRTSARDITDRKQIEAEL 425 + + G + +D+EFRCVRKDG++ WLS S PI D++G F GFRTS RDIT+RKQ+EAEL Sbjct: 414 QKALQGLRGDDLEFRCVRKDGSLMWLSASWVPITDSKGEFIGFRTSGRDITERKQVEAEL 473 Query: 426 RISAVAFDSREGMLITDANSKILRVNKAFTEITGYTAEEIVGKHPNLLRSDRHGPAFFQE 485 RI+AVAFDS E M+ITDA++ ILRVN AFTE TGYTAEEIVG+ P +LRS RH AFFQE Sbjct: 474 RIAAVAFDSMEPMMITDASATILRVNSAFTECTGYTAEEIVGQTPRVLRSGRHDDAFFQE 533 Query: 486 MRESVRRFGKWQGEIWDRRKNGEVYPEWLTISAVKNKDNQVTHYVSTHHDISDRKLAEER 545 M E + G WQGE+WDRRKNGEVYP+WLTISAV + + V+HYV THHDI++RK+AEER Sbjct: 534 MWEEIHSAGGWQGEVWDRRKNGEVYPKWLTISAVMSDNGTVSHYVGTHHDITERKIAEER 593 Query: 546 IRELAFFDALTRLPNRTLLLDRLKQAIALSLRTRTCGALLFIDLDHFKTLNDTVGHEKGD 605 I+ELAFFDALTRLPNRTLLLDRL+QAI S R CGALLFIDLDHFKTLNDT+GH+KGD Sbjct: 594 IKELAFFDALTRLPNRTLLLDRLRQAITASARNEACGALLFIDLDHFKTLNDTLGHDKGD 653 Query: 606 TLLKQVAQRLLANVRENDTVARVGGDEFVVVLEGLNDTQQEAATQTRTIGEKILAALGQT 665 LL+QVA+RL +V E+DTVARVGGDEFVVVL L+ +QEAA QT +GE+ILA LG Sbjct: 654 LLLQQVARRLADSVLESDTVARVGGDEFVVVLGNLHKNRQEAANQTEAVGERILAVLGSP 713 Query: 666 YQLDEVEYRTTASIGATVFLGRAASVDELMKQADLAMYKAKETGRNALRFFDPAMQTAVL 725 Y L ++EYRT+ASIGATVF G AS+DEL+KQADLAMYK+KE GRNA+RFFDP MQT V+ Sbjct: 714 YHLGKIEYRTSASIGATVFRGHQASIDELLKQADLAMYKSKERGRNAVRFFDPDMQTVVV 773 Query: 726 ERATLEAGLRKAIEGNQLLLHYQPQVVEGGRVTGAEVLVRWQHPQRGMVPPGDFIPLAEE 785 +RA LEAGLR AIE NQ LLHYQ QVV G RVTGAE LVRWQHPQRG+VPP +FIPLAEE Sbjct: 774 QRAALEAGLRNAIEDNQFLLHYQAQVV-GTRVTGAEALVRWQHPQRGIVPPAEFIPLAEE 832 Query: 786 TGLILSLGNWVLETACTQLATWAKRPRMAELSIAVNVSAPQLREHDFVQTVLDIIDRTGA 845 TGLI++LG+WVLE AC QLA WA RP MA L+IAVNVS Q R+ DFV VL II RTGA Sbjct: 833 TGLIVALGSWVLEAACAQLARWAARPDMAHLTIAVNVSVQQFRKADFVDNVLTIIGRTGA 892 Query: 846 NPRRLKLELTESLLVDNVEDIIQKMFALKAYGVEFSLDDFGTGYSSLSYLKRLPLNQLKI 905 P RLKLELTES+LVDNV+DII+KM ALKA G+ F+LDDFG GYSSLSYLKRLPL+QLKI Sbjct: 893 RPDRLKLELTESVLVDNVQDIIEKMSALKAKGIVFALDDFGIGYSSLSYLKRLPLDQLKI 952 Query: 906 DQSFVRDVLIDPNDASIAKTIVNLAQSLGLGVIAEGVETDAQRSFLADAGCHAYQGYYFC 965 D+SFVRDVL+D NDA IA+TIV LA+SLGLGVIAEGVET+AQR FLA AGC+AYQGYYFC Sbjct: 953 DRSFVRDVLVDSNDAVIARTIVALARSLGLGVIAEGVETEAQRDFLAAAGCYAYQGYYFC 1012 Query: 966 RPVTVEAFEKFAQDRDLHISVA 987 RP+ +E FE + + VA Sbjct: 1013 RPLPIEDFEALLNNVETRQCVA 1034 Score = 133 bits (335), Expect = 1e-28, Method: Composition-based stats. Identities = 65/110 (59%), Positives = 82/110 (74%), Gaps = 1/110 (0%) Query: 20 AAISGKVKLDLDADGQGQPSFLMYLPIYARGMPQSTIAERRASLIGWVHASFRMSDVIAS 79 A +SGKV+L +D+ G +P F+MYLPIYARG PQ ++A+RRA L+GWV+ASFRM DVIAS Sbjct: 176 ATLSGKVRLSVDS-GNARPGFIMYLPIYARGQPQDSVAQRRAHLVGWVYASFRMHDVIAS 234 Query: 80 LYGEQPMGVAFAIYDGVEPSTDALLYHSATGLDQKKPTLISATEYLVVAG 129 LYGEQP G+ AIYDGVE S ALL+ + + T ++A EYLVV G Sbjct: 235 LYGEQPPGLTIAIYDGVETSAAALLHKTPEAPGHHRVTDMAANEYLVVGG 284 >ref|YP_524490.1| PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gb|ABD70959.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Rhodoferax ferrireducens T118] Length = 1036 Score = 1075 bits (2779), Expect = 0.0, Method: Composition-based stats. Identities = 547/851 (64%), Positives = 666/851 (78%), Gaps = 7/851 (0%) Query: 133 MAAISGKVKLDLDADGQGQPSFLLYLPIYARGMPQSTIAERRASLIGWVHAVFRMSDVIA 192 MAAISGKV+L +D+ P F+++LP+YAR P ++A R+A L WV+A FRM+D++A Sbjct: 175 MAAISGKVRLTVDSQPDALPGFIMFLPVYARAQPHDSVALRQAHLSAWVYASFRMNDLMA 234 Query: 193 SLYGEQPMGVAFAIYDGVEPSTDALLYHSATGLDQKKPTLISATEYLVVA-------MNT 245 SLYGEQP G++ AIYDGVEPS LLY ++ + + ++A EYLVVA M+ Sbjct: 235 SLYGEQPPGLSVAIYDGVEPSASTLLYSTSGDAAKPRRAAMAADEYLVVAGRTWTLSMSA 294 Query: 246 IDDFTTRFGRNAELQTALTGVGLSMLLALLAWLLMSSRRRAIRLAKKMTVELRASEEQFR 305 D+F G +AE A+ G GLS+LLALLAWL+ + R RA+RLA MT ELR SEE+FR Sbjct: 295 KDEFKDSVGSSAESLIAVAGTGLSLLLALLAWLMATGRDRAVRLAATMTRELRESEEKFR 354 Query: 306 AIADCTVNWEVWWGLDGRPRWINHAVRDYTGYTVEECLSMPDFIGSIVHPDDERRIRAEL 365 AIADCTVN EVWWGLDGRPRWIN +V+DY+GYTV+ECL+MPDF G+++HP+D R+ EL Sbjct: 355 AIADCTVNLEVWWGLDGRPRWINPSVKDYSGYTVQECLAMPDFAGTLIHPEDMPRVAPEL 414 Query: 366 ARCMDGQKREDVEFRCVRKDGTVFWLSLSSAPIADAQGSFTGFRTSARDITDRKQIEAEL 425 + + G + +D+EFRCVRKDG+VFWLS S PI DA+G FTGFRTS RD+TDRKQ EAEL Sbjct: 415 QKGLQGLRGDDLEFRCVRKDGSVFWLSASWVPIQDAKGVFTGFRTSGRDVTDRKQAEAEL 474 Query: 426 RISAVAFDSREGMLITDANSKILRVNKAFTEITGYTAEEIVGKHPNLLRSDRHGPAFFQE 485 RI+AVAFDS EGM++TDA+S ILRVNKAFTEITGY+AEE VG+ P L++S RHG F++ Sbjct: 475 RIAAVAFDSLEGMMMTDASSVILRVNKAFTEITGYSAEEAVGQTPRLIQSGRHGEDFYRA 534 Query: 486 MRESVRRFGKWQGEIWDRRKNGEVYPEWLTISAVKNKDNQVTHYVSTHHDISDRKLAEER 545 M + +RR G WQGE+W+RRK+GEVYP+ L+IS VK+ D VTHY++ HHDIS+RK AEER Sbjct: 535 MWDDIRRKGGWQGEVWNRRKSGEVYPQLLSISVVKDADGTVTHYIAAHHDISERKNAEER 594 Query: 546 IRELAFFDALTRLPNRTLLLDRLKQAIALSLRTRTCGALLFIDLDHFKTLNDTVGHEKGD 605 I+ELAFFD LT L NRTLLLDR Q +A S R + GAL+FIDLD+FK LNDT+GH+ GD Sbjct: 595 IKELAFFDQLTGLANRTLLLDRAVQTMAASSRDGSFGALMFIDLDNFKMLNDTLGHDMGD 654 Query: 606 TLLKQVAQRLLANVRENDTVARVGGDEFVVVLEGLNDTQQEAATQTRTIGEKILAALGQT 665 LLKQVAQRL VR+ DTVAR+GGDEFVV L GL EAA T+ +KIL AL QT Sbjct: 655 ILLKQVAQRLNTCVRDGDTVARLGGDEFVVKLAGLGTVAGEAAVSAETVADKILTALNQT 714 Query: 666 YQLDEVEYRTTASIGATVFLGRAASVDELMKQADLAMYKAKETGRNALRFFDPAMQTAVL 725 YQL V Y +T SIG T+F G++ +++ELMKQADLAMY+AK RN +RFFDPAM++ ++ Sbjct: 715 YQLGSVAYHSTPSIGVTLFKGQSVAIEELMKQADLAMYRAKAASRNTVRFFDPAMESVMM 774 Query: 726 ERATLEAGLRKAIEGNQLLLHYQPQVVEGGRVTGAEVLVRWQHPQRGMVPPGDFIPLAEE 785 RA LE LR+A+E +Q +LHYQ QV +TGAEVLVRWQHPQRGMV P DFIP AEE Sbjct: 775 VRAALERDLRQALEEHQFVLHYQAQVAGDYHLTGAEVLVRWQHPQRGMVWPDDFIPAAEE 834 Query: 786 TGLILSLGNWVLETACTQLATWAKRPRMAELSIAVNVSAPQLREHDFVQTVLDIIDRTGA 845 TGLIL LG+WVL+TACTQL WA RP A+L++AVNVSA Q R+ DFV VL ++ TGA Sbjct: 835 TGLILPLGHWVLQTACTQLTIWAARPETADLTVAVNVSAQQFRQPDFVAQVLAVLAATGA 894 Query: 846 NPRRLKLELTESLLVDNVEDIIQKMFALKAYGVEFSLDDFGTGYSSLSYLKRLPLNQLKI 905 NP+RLKLELTESLLV NV+D+I+KM ALKA GV FSLDDFGTG+SSLSYLKRLPL+QLKI Sbjct: 895 NPQRLKLELTESLLVSNVQDLIEKMAALKAKGVGFSLDDFGTGFSSLSYLKRLPLDQLKI 954 Query: 906 DQSFVRDVLIDPNDASIAKTIVNLAQSLGLGVIAEGVETDAQRSFLADAGCHAYQGYYFC 965 D+SFVRDVL DPNDA+IAKTI+ LAQSL LGVIAEGVET AQR FLA AGC AYQGY+F Sbjct: 955 DKSFVRDVLTDPNDAAIAKTIIALAQSLALGVIAEGVETSAQRDFLAQAGCQAYQGYFFS 1014 Query: 966 RPVTVEAFEKF 976 RPV +E FE+ Sbjct: 1015 RPVPLEDFEQL 1025 Score = 125 bits (314), Expect = 4e-26, Method: Composition-based stats. Identities = 61/120 (50%), Positives = 84/120 (70%) Query: 20 AAISGKVKLDLDADGQGQPSFLMYLPIYARGMPQSTIAERRASLIGWVHASFRMSDVIAS 79 AAISGKV+L +D+ P F+M+LP+YAR P ++A R+A L WV+ASFRM+D++AS Sbjct: 176 AAISGKVRLTVDSQPDALPGFIMFLPVYARAQPHDSVALRQAHLSAWVYASFRMNDLMAS 235 Query: 80 LYGEQPMGVAFAIYDGVEPSTDALLYHSATGLDQKKPTLISATEYLVVAGPHTMAAISGK 139 LYGEQP G++ AIYDGVEPS LLY ++ + + ++A EYLVVAG ++S K Sbjct: 236 LYGEQPPGLSVAIYDGVEPSASTLLYSTSGDAAKPRRAAMAADEYLVVAGRTWTLSMSAK 295 >ref|YP_284581.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gb|AAZ46111.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 862 Score = 783 bits (2023), Expect = 0.0, Method: Composition-based stats. Identities = 411/649 (63%), Positives = 484/649 (74%), Gaps = 23/649 (3%) Query: 343 LSMPDFIGSIVHPDDERRIRAELARCMDG---------------QKREDVEFRCVRKDGT 387 L +PD + PD E IR AR G +K + VR DGT Sbjct: 182 LDLPDVLFEQPEPDFETLIRYNAARGEYGPGDPEQQVAAIIARTKKFVPHKIERVRPDGT 241 Query: 388 VFWLSLSSAPIADAQGSFTGFRTSARDITDRKQIEAELRISAVAFDSREGMLITDANSKI 447 LS+ P+A GF + DITDRKQ E +LRI+A AF+S+ M+ITDAN I Sbjct: 242 S--LSIRGVPLASG-----GFLSIYTDITDRKQSEEQLRIAAAAFESQTCMIITDANRVI 294 Query: 448 LRVNKAFTEITGYTAEEIVGKHPNLLRSDRHGPAFFQEMRESVRRFGKWQGEIWDRRKNG 507 RVN+AF E TGY+AEE VG+ P LL+S RHG F++EM E++ R G WQGEIW RRKNG Sbjct: 295 QRVNRAFIETTGYSAEEAVGQTPRLLQSGRHGADFYREMWETIHRTGAWQGEIWGRRKNG 354 Query: 508 EVYPEWLTISAVKNKDNQVTHYVSTHHDISDRKLAEERIRELAFFDALTRLPNRTLLLDR 567 EVYP+WL+ISAV + +V+HY+ TH+DI++RK AEERI LAFFD LT LPNRTLLLDR Sbjct: 355 EVYPKWLSISAVVGTNGRVSHYIGTHNDITERKKAEERINALAFFDQLTGLPNRTLLLDR 414 Query: 568 LKQAIALSLRTRTCGALLFIDLDHFKTLNDTVGHEKGDTLLKQVAQRLLANVRENDTVAR 627 LKQ I S R+ + GALLFIDLD+FKTLNDT+GH+ GD LLKQVA RL VR+ DTVAR Sbjct: 415 LKQTILSSGRSDSHGALLFIDLDNFKTLNDTLGHDVGDQLLKQVALRLTHCVRDGDTVAR 474 Query: 628 VGGDEFVVVLEGLNDTQQEAATQTRTIGEKILAALGQTYQLDEVEYRTTASIGATVFLGR 687 +GGDEFVVVL LN +EAA T T+ EKILA L QTYQL V + ++ASIGAT+F G Sbjct: 475 LGGDEFVVVLANLNTNDKEAAQDTETVAEKILATLNQTYQLGHVTHHSSASIGATLFKGP 534 Query: 688 AASVDELMKQADLAMYKAKETGRNALRFFDPAMQTAVLERATLEAGLRKAIEGNQLLLHY 747 +D+LMKQADL+MYKAK GRNA+RFFDP+M+ AV RA +E L +A+ Q LLHY Sbjct: 535 LIPIDDLMKQADLSMYKAKAAGRNAVRFFDPSMEIAVKVRAEMEDDLLRALAEKQFLLHY 594 Query: 748 QPQVVEGGRVTGAEVLVRWQHPQRGMVPPGDFIPLAEETGLILSLGNWVLETACTQLATW 807 Q Q+V G R+TGAEVL+RWQHPQRGMV P +FIPLAEETGLIL LG+WVLETACTQLA W Sbjct: 595 QAQMV-GERLTGAEVLLRWQHPQRGMVSPAEFIPLAEETGLILPLGHWVLETACTQLAQW 653 Query: 808 AKRPRMAELSIAVNVSAPQLREHDFVQTVLDIIDRTGANPRRLKLELTESLLVDNVEDII 867 A RP +A L++AVNVSA Q R++DFV VL ++++TGANP+RLKLELTESLLV+NVEDII Sbjct: 654 AGRPEVAHLTLAVNVSAHQFRQNDFVDQVLGVLEKTGANPQRLKLELTESLLVENVEDII 713 Query: 868 QKMFALKAYGVEFSLDDFGTGYSSLSYLKRLPLNQLKIDQSFVRDVLIDPNDASIAKTIV 927 KM ALK GV FSLDDFGTGYSSLSYLKRLPL+ LKIDQSFVRDVL D NDASIA+TIV Sbjct: 714 DKMAALKHRGVGFSLDDFGTGYSSLSYLKRLPLDHLKIDQSFVRDVLTDSNDASIARTIV 773 Query: 928 NLAQSLGLGVIAEGVETDAQRSFLADAGCHAYQGYYFCRPVTVEAFEKF 976 LA SLGLGVIAEGVET+AQR FLA +GCH YQGYYF RP+ +E FE F Sbjct: 774 ALANSLGLGVIAEGVETEAQRDFLASSGCHTYQGYYFSRPLPIEDFESF 822 >ref|YP_001859971.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Burkholderia phymatum STM815] gb|ACC72925.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Burkholderia phymatum STM815] Length = 915 Score = 778 bits (2009), Expect = 0.0, Method: Composition-based stats. Identities = 398/579 (68%), Positives = 473/579 (81%) Query: 403 GSFTGFRTSARDITDRKQIEAELRISAVAFDSREGMLITDANSKILRVNKAFTEITGYTA 462 G R +++ + ++ EAELRI+AVAFDS EGM++TDA+ ILRVN AFT+ TGYTA Sbjct: 328 GRSRAMRLASKMTAEVRESEAELRIAAVAFDSLEGMMVTDADGTILRVNSAFTKCTGYTA 387 Query: 463 EEIVGKHPNLLRSDRHGPAFFQEMRESVRRFGKWQGEIWDRRKNGEVYPEWLTISAVKNK 522 ++++G++P LL S RH AFF++M E++ R G WQGEIWDRRKNGE+YP+WLTI+AVK Sbjct: 388 DDVIGRNPRLLSSGRHDAAFFRDMWETIHRVGGWQGEIWDRRKNGEIYPKWLTITAVKAV 447 Query: 523 DNQVTHYVSTHHDISDRKLAEERIRELAFFDALTRLPNRTLLLDRLKQAIALSLRTRTCG 582 D VTHYV TH+DI++RKLAEE+I+ELAFFDALT LPNRTLL DRLKQ IALS + T G Sbjct: 448 DGNVTHYVGTHYDITERKLAEEQIKELAFFDALTHLPNRTLLRDRLKQVIALSAQNHTHG 507 Query: 583 ALLFIDLDHFKTLNDTVGHEKGDTLLKQVAQRLLANVRENDTVARVGGDEFVVVLEGLND 642 ALLF+DLD+FKTLNDT+GH+KGD LL QVA RLL +VRE DTVAR+GGDEFV+VL L+ Sbjct: 508 ALLFVDLDNFKTLNDTLGHDKGDLLLGQVAVRLLGSVREGDTVARMGGDEFVIVLSDLSR 567 Query: 643 TQQEAATQTRTIGEKILAALGQTYQLDEVEYRTTASIGATVFLGRAASVDELMKQADLAM 702 + EAA++T EK+L AL + Y L E+RTTASIGAT+F G S+DEL+KQ+DLAM Sbjct: 568 NRDEAASETEGAAEKVLTALSRPYYLAGTEFRTTASIGATLFTGHETSIDELLKQSDLAM 627 Query: 703 YKAKETGRNALRFFDPAMQTAVLERATLEAGLRKAIEGNQLLLHYQPQVVEGGRVTGAEV 762 YK+KE+GRNA+ FFDPAMQT V+ERA LEA LR+AI+ +QLL+HYQ QV+ G RVTGAE Sbjct: 628 YKSKESGRNAICFFDPAMQTVVMERAALEAALRRAIDEDQLLVHYQAQVLNGNRVTGAEA 687 Query: 763 LVRWQHPQRGMVPPGDFIPLAEETGLILSLGNWVLETACTQLATWAKRPRMAELSIAVNV 822 LVRWQHPQ G+VPP +FIPLAEETGLIL+LG+ VL+TAC QLA W+ RP A LSIAVNV Sbjct: 688 LVRWQHPQHGLVPPAEFIPLAEETGLILALGDRVLDTACRQLAQWSLRPDRAHLSIAVNV 747 Query: 823 SAPQLREHDFVQTVLDIIDRTGANPRRLKLELTESLLVDNVEDIIQKMFALKAYGVEFSL 882 SA QLRE+ FV +VL+ + RTGA+P RLKLELTES+LVDNVEDII+KM L+ GV FSL Sbjct: 748 SAQQLRENSFVTSVLEALARTGADPSRLKLELTESVLVDNVEDIIRKMTLLRTKGVVFSL 807 Query: 883 DDFGTGYSSLSYLKRLPLNQLKIDQSFVRDVLIDPNDASIAKTIVNLAQSLGLGVIAEGV 942 DDFG GYSSLSYLKRLPL QLKID+SFVRDVL DPNDA IA+ IV LAQSLGLGVIAEGV Sbjct: 808 DDFGVGYSSLSYLKRLPLGQLKIDRSFVRDVLDDPNDAVIARAIVALAQSLGLGVIAEGV 867 Query: 943 ETDAQRSFLADAGCHAYQGYYFCRPVTVEAFEKFAQDRD 981 ET AQR FLADAGCHAYQGY FCRP+ +E FE FA D Sbjct: 868 ETQAQRQFLADAGCHAYQGYLFCRPLPIEDFEAFADTFD 906 Score = 181 bits (458), Expect = 8e-43, Method: Composition-based stats. Identities = 128/306 (41%), Positives = 181/306 (59%), Gaps = 20/306 (6%) Query: 133 MAAISGKVKLDLDADGQGQPSFLLYLPIYARGMPQSTIAERRASLIGWVHAVFRMSDVIA 192 +A +SGKV+L D+D Q F++YLP+Y RG PQ T+ ERRA L+GWV+A FRM DV+A Sbjct: 175 LAVVSGKVQLASDSDAQPVAGFVMYLPVYERGAPQDTVDERRAHLLGWVYAAFRMRDVLA 234 Query: 193 SLYGEQPMGVAFAIYDGVEPSTDALLYHSATGLDQKKPTLISATEYLVV-------AMNT 245 SLYG+QP G+ +IYDG +PS ++LLY S+ + K ++SA EYLVV +M Sbjct: 235 SLYGDQPAGLYLSIYDGTQPSAESLLYRSS---EPKLRDVVSANEYLVVGGHDWTLSMTA 291 Query: 246 IDDFTTRFGRNAELQTALTGVGLSMLLALLAWLLMSSRRRAIRLAKKMTVELRASEEQFR 305 DF RFG NA+L A TG GLS+LLALLAW L S R RA+RLA KMT E+R SE + R Sbjct: 292 QPDFKARFGHNAKLLIACTGAGLSLLLALLAWSLASGRSRAMRLASKMTAEVRESEAELR 351 Query: 306 --AIADCTVNWEVWWGLDGRPRWINHAVRDYTGYTVEECLSM-PDFIGSIVHPDDERRIR 362 A+A ++ + DG +N A TGYT ++ + P + S H R Sbjct: 352 IAAVAFDSLEGMMVTDADGTILRVNSAFTKCTGYTADDVIGRNPRLLSSGRHDAAFFRDM 411 Query: 363 AELARCMDGQKREDVEFRCVRKDGTVF--WLSLSSAPIADAQGSFTGFRTSARDITDRKQ 420 E + G + E + RK+G ++ WL++++ D G+ T + + DIT+RK Sbjct: 412 WETIHRVGGWQGEIWD---RRKNGEIYPKWLTITAVKAVD--GNVTHYVGTHYDITERKL 466 Query: 421 IEAELR 426 E +++ Sbjct: 467 AEEQIK 472 Score = 127 bits (320), Expect = 8e-27, Method: Composition-based stats. Identities = 61/110 (55%), Positives = 81/110 (73%), Gaps = 3/110 (2%) Query: 20 AAISGKVKLDLDADGQGQPSFLMYLPIYARGMPQSTIAERRASLIGWVHASFRMSDVIAS 79 A +SGKV+L D+D Q F+MYLP+Y RG PQ T+ ERRA L+GWV+A+FRM DV+AS Sbjct: 176 AVVSGKVQLASDSDAQPVAGFVMYLPVYERGAPQDTVDERRAHLLGWVYAAFRMRDVLAS 235 Query: 80 LYGEQPMGVAFAIYDGVEPSTDALLYHSATGLDQKKPTLISATEYLVVAG 129 LYG+QP G+ +IYDG +PS ++LLY S+ + K ++SA EYLVV G Sbjct: 236 LYGDQPAGLYLSIYDGTQPSAESLLYRSS---EPKLRDVVSANEYLVVGG 282