BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4754.p (423 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775968.1| phenylacetyl-CoA-ligase [Herbaspirillum sero... 778 0.0 ref|YP_004753206.1| coenzyme F390 synthetase [Collimonas fungivo... 648 0.0 ref|YP_997479.1| putative phenylacetate-CoA ligase [Verminephrob... 630 e-178 ref|ZP_08276403.1| putative phenylacetate-CoA ligase [Oxalobacte... 596 e-168 gb|EGW59834.1| Phenylacetate--CoA ligase [Dechlorosoma suillum PS] 497 e-138 >ref|YP_003775968.1| phenylacetyl-CoA-ligase [Herbaspirillum seropedicae SmR1] gb|ADJ64060.1| phenylacetyl-CoA-ligase protein [Herbaspirillum seropedicae SmR1] Length = 423 Score = 778 bits (2008), Expect = 0.0, Method: Composition-based stats. Identities = 399/423 (94%), Positives = 409/423 (96%) Query: 1 MSDPTQVLAELDALERRDPQQREQALMRALPQLVARAQSAPGWARILAGVDAAAITSRAA 60 MSDP QV+AELDALERRDPQQRE+ LMRALPQL+ARAQSA GWARIL GVDAAAI+SRAA Sbjct: 1 MSDPRQVVAELDALERRDPQQREEQLMRALPQLLARAQSAAGWARILGGVDAAAISSRAA 60 Query: 61 LAQLPVTRKSDLKELQTRESPFGGLNTTPARQLRRLFVSPGPIFDPEGQGADWWRFASPM 120 LAQLPVTRKSDLKELQTRESPFGGLN TP RQLRRLFVSPGPIFDPEG GADWWRFASPM Sbjct: 61 LAQLPVTRKSDLKELQTRESPFGGLNATPTRQLRRLFVSPGPIFDPEGHGADWWRFASPM 120 Query: 121 KALGLQGGHILQNCFAYHFTPAAFMVEGAAARLGCAVIPAGIGQTELQVNAMAALKPDAY 180 KALGLQ GHILQNCFAYHFTPAAFMVEGAAARLGCAVIPAGIGQTELQVNAMAALKPDAY Sbjct: 121 KALGLQAGHILQNCFAYHFTPAAFMVEGAAARLGCAVIPAGIGQTELQVNAMAALKPDAY 180 Query: 181 VGTPSFLKIIIEKAREMGADISSVQRALVSAEALPPSLRIWFHEHGVPQVLQLYASADIG 240 VGTPSFLKIIIEKA+EMGADISSVQRALVSAEALPPSLR WFHEHGVPQVLQLYASADIG Sbjct: 181 VGTPSFLKIIIEKAQEMGADISSVQRALVSAEALPPSLRNWFHEHGVPQVLQLYASADIG 240 Query: 241 NIAYETMSEGAVHPGMVLDESLILEIVRPGTGDPVAEGEVGEVVVTSFNPDYPLIRFGTG 300 NIAYETMSEGAVHPGMVLDE+LILEIVRPGTGDPVA GEVGEVVVTSFNPDYPLIRFGTG Sbjct: 241 NIAYETMSEGAVHPGMVLDEALILEIVRPGTGDPVAAGEVGEVVVTSFNPDYPLIRFGTG 300 Query: 301 DLSAVVQGISPCGRTNTRIKGWMGRADQTTKVRGMFVHPSQVADVLRRHGDVLRARLVVS 360 DLSAVV G+SPCGRTNTRIKGWMGRADQTTKVRGMFVHPSQVADVLRRH DVLRARLVVS Sbjct: 301 DLSAVVPGVSPCGRTNTRIKGWMGRADQTTKVRGMFVHPSQVADVLRRHADVLRARLVVS 360 Query: 361 GEMANDIMTLHCEVGDPEDPAIDVNALAGSLREVTKLRGDVLLVAAGSLPNDGKVIEDAR 420 GEMAND+MTLHCEVGDPE+PAIDV ALAGSLREVTKLRG+VLLVA GSLPNDGKVIEDAR Sbjct: 361 GEMANDVMTLHCEVGDPENPAIDVGALAGSLREVTKLRGEVLLVAPGSLPNDGKVIEDAR 420 Query: 421 KYE 423 KYE Sbjct: 421 KYE 423 >ref|YP_004753206.1| coenzyme F390 synthetase [Collimonas fungivorans Ter331] gb|AEK62383.1| Coenzyme F390 synthetase [Collimonas fungivorans Ter331] Length = 415 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 322/413 (77%), Positives = 362/413 (87%), Gaps = 2/413 (0%) Query: 11 LDALERRDPQQREQALMRALPQLVARAQSAPGWARILAGVDAAAITSRAALAQLPVTRKS 70 LD LE+R P QRE LM LPQL+ARAQ+A GW RIL GV A I RAALAQLP+TRKS Sbjct: 5 LDFLEQRHPLQREADLMNGLPQLIARAQAATGWGRILHGVAAGEIRDRAALAQLPLTRKS 64 Query: 71 DLKELQTRESPFGGLNTTPARQLRRLFVSPGPIFDPEGQGADWWRFASPMKALGLQGGHI 130 DL ELQ ++ PFGGLNTTP RQLRRL+VSPG IFDPEG G DWWRF+ PM+ALGL+ G + Sbjct: 65 DLHELQAQQPPFGGLNTTPHRQLRRLYVSPGAIFDPEGYGQDWWRFSRPMRALGLRAGDL 124 Query: 131 LQNCFAYHFTPAAFMVEGAAARLGCAVIPAGIGQTELQVNAMAALKPDAYVGTPSFLKII 190 +QNCF YHFTPAAFMVEGAA++LGCAVIPAGIGQTELQV AM+AL+PDAYVGTPSFLKII Sbjct: 125 IQNCFTYHFTPAAFMVEGAASKLGCAVIPAGIGQTELQVQAMSALRPDAYVGTPSFLKII 184 Query: 191 IEKAREMGADISSVQRALVSAEALPPSLRIWFHEHGVPQVLQLYASADIGNIAYETMSEG 250 IEKAREMGADI +VQRAL+SAEALPPSLR WFH++GVP VLQLYASAD+GNIAYE++S G Sbjct: 185 IEKAREMGADIGTVQRALLSAEALPPSLRQWFHDNGVPHVLQLYASADVGNIAYESLSNG 244 Query: 251 AVHPGMVLDESLILEIVRPGTGDPVAEGEVGEVVVTSFNPDYPLIRFGTGDLSAVVQGIS 310 ++PGM+LDE LILEIVRPG+GDPVA GEVGEVV+TSFNPDYPLIRF TGDLSAV++G+S Sbjct: 245 RLNPGMILDEDLILEIVRPGSGDPVAAGEVGEVVLTSFNPDYPLIRFATGDLSAVLEGVS 304 Query: 311 PCGRTNTRIKGWMGRADQTTKVRGMFVHPSQVADVLRRHGDVLRARLVVSGEMANDIMTL 370 PCGRTNTRIKGWMGRADQ TKVRGMFVHPSQ+A+VL+RH VL+ARLVVSG MAND+MTL Sbjct: 305 PCGRTNTRIKGWMGRADQVTKVRGMFVHPSQLAEVLKRHPQVLKARLVVSGAMANDVMTL 364 Query: 371 HCEVGDPEDPAIDVNALAGSLREVTKLRGDVLLVAAGSLPNDGKVIEDARKYE 423 HCE D PA+ +A SLRE+TKLRG+VL VA GSLPNDGKVIEDARKYE Sbjct: 365 HCEAQDA--PALAAEQIADSLREITKLRGEVLFVAPGSLPNDGKVIEDARKYE 415 >ref|YP_997479.1| putative phenylacetate-CoA ligase [Verminephrobacter eiseniae EF01-2] gb|ABM58461.1| putative phenylacetate-CoA ligase [Verminephrobacter eiseniae EF01-2] Length = 413 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 323/413 (78%), Positives = 354/413 (85%) Query: 11 LDALERRDPQQREQALMRALPQLVARAQSAPGWARILAGVDAAAITSRAALAQLPVTRKS 70 +D LERRDPQQR+ ALM ALP LVARAQ A GW +IL V A I SRAALAQLPVTRKS Sbjct: 1 MDTLERRDPQQRDAALMAALPTLVARAQGAEGWKQILKDVRAGDIDSRAALAQLPVTRKS 60 Query: 71 DLKELQTRESPFGGLNTTPARQLRRLFVSPGPIFDPEGQGADWWRFASPMKALGLQGGHI 130 DLK+LQT PFGGLNTTP RQLRRLFVSPGPIFDPEGQ DWWRFA PM+ALGL GHI Sbjct: 61 DLKDLQTARPPFGGLNTTPHRQLRRLFVSPGPIFDPEGQQQDWWRFARPMRALGLHAGHI 120 Query: 131 LQNCFAYHFTPAAFMVEGAAARLGCAVIPAGIGQTELQVNAMAALKPDAYVGTPSFLKII 190 +QNCF+YHFTPAAFMVEGAAARLGCAVIPAG GQT LQV M AL+ DAYVGTPSFLKI+ Sbjct: 121 IQNCFSYHFTPAAFMVEGAAARLGCAVIPAGTGQTGLQVQTMRALQADAYVGTPSFLKIL 180 Query: 191 IEKAREMGADISSVQRALVSAEALPPSLRIWFHEHGVPQVLQLYASADIGNIAYETMSEG 250 +EKA+EMG ++S+QRALVS EALPPSLR WF +HGVP VLQLYASADIGNIAYE++SEG Sbjct: 181 LEKAQEMGLALASLQRALVSGEALPPSLRNWFVDHGVPHVLQLYASADIGNIAYESISEG 240 Query: 251 AVHPGMVLDESLILEIVRPGTGDPVAEGEVGEVVVTSFNPDYPLIRFGTGDLSAVVQGIS 310 V+PGMVLDE LILEIV PGTGD VA GEVGEVVVTSFNPDYPLIRFGTGDLSAV+ GIS Sbjct: 241 RVNPGMVLDEDLILEIVHPGTGDLVAPGEVGEVVVTSFNPDYPLIRFGTGDLSAVLAGIS 300 Query: 311 PCGRTNTRIKGWMGRADQTTKVRGMFVHPSQVADVLRRHGDVLRARLVVSGEMANDIMTL 370 PCGRTNTRI+GW+GRADQTTKVRGMFVHP QVA++ RRH +L+ARLVVSG MAND MTL Sbjct: 301 PCGRTNTRIEGWLGRADQTTKVRGMFVHPQQVAEMARRHALILKARLVVSGGMANDSMTL 360 Query: 371 HCEVGDPEDPAIDVNALAGSLREVTKLRGDVLLVAAGSLPNDGKVIEDARKYE 423 +CE D E A A+A S+R++TKLRG+V VA GSLPNDGKVIEDARKYE Sbjct: 361 YCETTDMEAAAQQAAAIADSVRDITKLRGEVKFVAPGSLPNDGKVIEDARKYE 413 >ref|ZP_08276403.1| putative phenylacetate-CoA ligase [Oxalobacteraceae bacterium IMCC9480] gb|EGF30125.1| putative phenylacetate-CoA ligase [Oxalobacteraceae bacterium IMCC9480] Length = 415 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 307/413 (74%), Positives = 349/413 (84%), Gaps = 2/413 (0%) Query: 11 LDALERRDPQQREQALMRALPQLVARAQSAPGWARILAGVDAAAITSRAALAQLPVTRKS 70 LD LE R P QRE LM LP L+ARAQ+A GWARIL V+A+ ITSRAALAQLPVTRKS Sbjct: 5 LDHLETRSPAQREADLMTRLPHLIARAQTASGWARILGDVEASGITSRAALAQLPVTRKS 64 Query: 71 DLKELQTRESPFGGLNTTPARQLRRLFVSPGPIFDPEGQGADWWRFASPMKALGLQGGHI 130 DL LQ+ PFGGL +T LRR+F+SPGPIFDPEG+ DWWRFA + ALGL+ G + Sbjct: 65 DLPSLQSGTPPFGGLTSTAPDGLRRIFMSPGPIFDPEGRSDDWWRFARGLHALGLRSGDL 124 Query: 131 LQNCFAYHFTPAAFMVEGAAARLGCAVIPAGIGQTELQVNAMAALKPDAYVGTPSFLKII 190 LQNCF+YHFTPAAFMVEGAAA+LGC VIPAG GQTE+QV AMA LKP AYVGTPSFLK+I Sbjct: 125 LQNCFSYHFTPAAFMVEGAAAKLGCVVIPAGSGQTEMQVQAMAELKPAAYVGTPSFLKLI 184 Query: 191 IEKAREMGADISSVQRALVSAEALPPSLRIWFHEHGVPQVLQLYASADIGNIAYETMSEG 250 IEKAR+MGADIS+ QRALVSAEALPPSLR W ++GVP VLQ+YASADIGNIAYET + G Sbjct: 185 IEKARDMGADISATQRALVSAEALPPSLRSWLQDNGVPHVLQMYASADIGNIAYETETAG 244 Query: 251 AVHPGMVLDESLILEIVRPGTGDPVAEGEVGEVVVTSFNPDYPLIRFGTGDLSAVVQGIS 310 V+PGM++DE ++LEIVRPGTGDPVA GEVGEVVVTSFNPDYPLIRF TGDLSAV++G S Sbjct: 245 RVNPGMIVDEDILLEIVRPGTGDPVAPGEVGEVVVTSFNPDYPLIRFATGDLSAVLEGTS 304 Query: 311 PCGRTNTRIKGWMGRADQTTKVRGMFVHPSQVADVLRRHGDVLRARLVVSGEMANDIMTL 370 PCGRTN RIKGWMGRADQTTKVR MFVHPSQVA+++RR V +ARLVVSGEMAND+MTL Sbjct: 305 PCGRTNLRIKGWMGRADQTTKVRAMFVHPSQVAEIVRRFPAVGKARLVVSGEMANDLMTL 364 Query: 371 HCEVGDPEDPAIDVNALAGSLREVTKLRGDVLLVAAGSLPNDGKVIEDARKYE 423 HCEV +D A+ A+ ++REVTKLRG+VLLVA G+L NDGKVIEDAR+YE Sbjct: 365 HCEVA-TQDAAMSA-AIVEAIREVTKLRGEVLLVAPGTLANDGKVIEDARRYE 415 >gb|EGW59834.1| Phenylacetate--CoA ligase [Dechlorosoma suillum PS] Length = 410 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 252/413 (61%), Positives = 317/413 (76%), Gaps = 8/413 (1%) Query: 12 DALERRDPQQREQALMRALPQLVARAQ-SAPGWARILAGVDAAAITSRAALAQLPVTRKS 70 D+LE RDP++RE++LM LP+ VA A+ +P +AR+LA V+ I +RAALA+LPVTRKS Sbjct: 5 DSLETRDPEERERSLMERLPRQVAHAKLHSPYFARLLAEVNPNDIHNRAALARLPVTRKS 64 Query: 71 DLKELQTRESPFGGLNTTPARQLRRLFVSPGPIFDPEGQGADWWRFASPMKALGLQGGHI 130 DL LQ ++PFGG+N TP L R++ SPGPI+DPEG+G DWWRFA + G + G + Sbjct: 65 DLVHLQREQAPFGGINATPLSGLSRVYASPGPIYDPEGRGQDWWRFARALHGAGFRAGEL 124 Query: 131 LQNCFAYHFTPAAFMVEGAAARLGCAVIPAGIGQTELQVNAMAALKPDAYVGTPSFLKII 190 + N F+YHFTPA FM+EGAA +LGC V PAGIGQTE+QV A+ LKP AYVGTPSFLKII Sbjct: 125 IHNTFSYHFTPAGFMLEGAAHKLGCPVFPAGIGQTEMQVQAINDLKPAAYVGTPSFLKII 184 Query: 191 IEKAREMGADISSVQRALVSAEALPPSLRIWFHEHGVPQVLQLYASADIGNIAYETMSEG 250 +EKA E+ AD +S+ +ALVS EALPPSLR + G+ V Q YA+AD+G IAYE+ ++ Sbjct: 185 LEKADELKADATSLTKALVSGEALPPSLRQALNARGI-TVRQCYATADLGMIAYESEAQ- 242 Query: 251 AVHPGMVLDESLILEIVRPGTGDPVAEGEVGEVVVTSFNPDYPLIRFGTGDLSAVVQGIS 310 G+ LDE +++EIVRPGTGDPVA+GEVGEV++T+FN DYPL+RF TGDLSAV+ GIS Sbjct: 243 ---QGLTLDEDVLMEIVRPGTGDPVADGEVGEVLITTFNLDYPLLRFATGDLSAVLPGIS 299 Query: 311 PCGRTNTRIKGWMGRADQTTKVRGMFVHPSQVADVLRRHGDVLRARLVVSGEMANDIMTL 370 PCGRTN RIKGW+GRADQTTKV+GMFVHP QVA V++RH ++ +ARLVV + D M L Sbjct: 300 PCGRTNVRIKGWLGRADQTTKVKGMFVHPHQVAAVVKRHPEIGKARLVVDNALGQDRMVL 359 Query: 371 HCEVGDPEDPAIDVNALAGSLREVTKLRGDVLLVAAGSLPNDGKVIEDARKYE 423 HCE G +D D A+ S+R+VTKLRG+V V+ G LPNDGKVIED R YE Sbjct: 360 HCESGRGDDVLGD--AVVASIRDVTKLRGEVRFVSPGDLPNDGKVIEDIRTYE 410