BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4750.p (304 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775972.1| amino acid ABC transporter permease [Herbasp... 494 e-138 ref|ZP_08276482.1| ABC-type transporter, permease component: HAA... 477 e-133 ref|YP_004753210.1| inner-membrane translocator [Collimonas fung... 467 e-130 ref|YP_997483.1| inner-membrane translocator [Verminephrobacter ... 449 e-124 ref|YP_004684147.1| high-affinity branched-chain amino acid tran... 447 e-123 >ref|YP_003775972.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64064.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 304/304 (100%), Positives = 304/304 (100%) Query: 1 MQFFLEVTLSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMEKGMPM 60 MQFFLEVTLSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMEKGMPM Sbjct: 1 MQFFLEVTLSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMEKGMPM 60 Query: 61 WAAIIGAFVVMILVGLATERFVLRKLVNQPPITLFMATIGLTFFLEGLGPLLFGSEVRPI 120 WAAIIGAFVVMILVGLATERFVLRKLVNQPPITLFMATIGLTFFLEGLGPLLFGSEVRPI Sbjct: 61 WAAIIGAFVVMILVGLATERFVLRKLVNQPPITLFMATIGLTFFLEGLGPLLFGSEVRPI 120 Query: 121 DLGIVDEPIQSVMDSIGIGISKFDLFASGMVVALVAALALFFQKTKVGRALRAVADDHQA 180 DLGIVDEPIQSVMDSIGIGISKFDLFASGMVVALVAALALFFQKTKVGRALRAVADDHQA Sbjct: 121 DLGIVDEPIQSVMDSIGIGISKFDLFASGMVVALVAALALFFQKTKVGRALRAVADDHQA 180 Query: 181 ALSLGIPLQHIWAVVWGVAGFVALIAGLLWGSRNGVQFALTMTALKALPVLILGGFTSIP 240 ALSLGIPLQHIWAVVWGVAGFVALIAGLLWGSRNGVQFALTMTALKALPVLILGGFTSIP Sbjct: 181 ALSLGIPLQHIWAVVWGVAGFVALIAGLLWGSRNGVQFALTMTALKALPVLILGGFTSIP 240 Query: 241 GAIVGGLIIGASEKLAEIYIPPVMQDAFGGNFGGIEGWFPYVFALLFLLVRPEGLFGERH 300 GAIVGGLIIGASEKLAEIYIPPVMQDAFGGNFGGIEGWFPYVFALLFLLVRPEGLFGERH Sbjct: 241 GAIVGGLIIGASEKLAEIYIPPVMQDAFGGNFGGIEGWFPYVFALLFLLVRPEGLFGERH 300 Query: 301 IDRV 304 IDRV Sbjct: 301 IDRV 304 >ref|ZP_08276482.1| ABC-type transporter, permease component: HAAT family [Oxalobacteraceae bacterium IMCC9480] gb|EGF30048.1| ABC-type transporter, permease component: HAAT family [Oxalobacteraceae bacterium IMCC9480] Length = 304 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 278/304 (91%), Positives = 294/304 (96%) Query: 1 MQFFLEVTLSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMEKGMPM 60 M+FF EV LSG+L+GLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLM+KG+PM Sbjct: 1 MKFFFEVLLSGMLTGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMDKGLPM 60 Query: 61 WAAIIGAFVVMILVGLATERFVLRKLVNQPPITLFMATIGLTFFLEGLGPLLFGSEVRPI 120 WAAIIGAF VM+LVGL+TERFVLRKLVNQPPITLFMATIGLTFFLEGLGPLLFGSEVRPI Sbjct: 61 WAAIIGAFAVMLLVGLSTERFVLRKLVNQPPITLFMATIGLTFFLEGLGPLLFGSEVRPI 120 Query: 121 DLGIVDEPIQSVMDSIGIGISKFDLFASGMVVALVAALALFFQKTKVGRALRAVADDHQA 180 +LGIVDEPIQS+MD+ GIGISKFDLFASGMV+ LV LALFFQKTK+GRALRAVADDHQA Sbjct: 121 NLGIVDEPIQSIMDNYGIGISKFDLFASGMVIVLVTLLALFFQKTKIGRALRAVADDHQA 180 Query: 181 ALSLGIPLQHIWAVVWGVAGFVALIAGLLWGSRNGVQFALTMTALKALPVLILGGFTSIP 240 ALSLGIPLQHIWA+VWGVAGFVAL AGLLWGSRNGVQFALTMTALKALPVLILGGFTS+P Sbjct: 181 ALSLGIPLQHIWAIVWGVAGFVALAAGLLWGSRNGVQFALTMTALKALPVLILGGFTSVP 240 Query: 241 GAIVGGLIIGASEKLAEIYIPPVMQDAFGGNFGGIEGWFPYVFALLFLLVRPEGLFGERH 300 GAIVGGLIIGASEKLAEIYIPPVMQ+ FGGNFGGIEGWFPYVFALLFLLVRP GLFGE+H Sbjct: 241 GAIVGGLIIGASEKLAEIYIPPVMQETFGGNFGGIEGWFPYVFALLFLLVRPSGLFGEKH 300 Query: 301 IDRV 304 IDRV Sbjct: 301 IDRV 304 >ref|YP_004753210.1| inner-membrane translocator [Collimonas fungivorans Ter331] gb|AEK62387.1| inner-membrane translocator [Collimonas fungivorans Ter331] Length = 304 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 279/304 (91%), Positives = 288/304 (94%) Query: 1 MQFFLEVTLSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMEKGMPM 60 MQFFLEVTLSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLM+KG PM Sbjct: 1 MQFFLEVTLSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMDKGWPM 60 Query: 61 WAAIIGAFVVMILVGLATERFVLRKLVNQPPITLFMATIGLTFFLEGLGPLLFGSEVRPI 120 WAAIIGAF VMI+V +ATER VLRKLVNQPPITLFMATIGL FFLEGLGP+LFGSEVR I Sbjct: 61 WAAIIGAFAVMIVVAVATERLVLRKLVNQPPITLFMATIGLAFFLEGLGPMLFGSEVRAI 120 Query: 121 DLGIVDEPIQSVMDSIGIGISKFDLFASGMVVALVAALALFFQKTKVGRALRAVADDHQA 180 +LGIVDEPI SVMD GIGISKFDLFASGMV+ LV LALFFQKTKVGRALRAVADDHQA Sbjct: 121 NLGIVDEPIASVMDGFGIGISKFDLFASGMVIGLVLLLALFFQKTKVGRALRAVADDHQA 180 Query: 181 ALSLGIPLQHIWAVVWGVAGFVALIAGLLWGSRNGVQFALTMTALKALPVLILGGFTSIP 240 ALSLGIPL+HIW +VWGVAGFVAL+AGLLWGSRNGVQFALTMTALKALPVLILGGFTSIP Sbjct: 181 ALSLGIPLRHIWVIVWGVAGFVALVAGLLWGSRNGVQFALTMTALKALPVLILGGFTSIP 240 Query: 241 GAIVGGLIIGASEKLAEIYIPPVMQDAFGGNFGGIEGWFPYVFALLFLLVRPEGLFGERH 300 GAI GGLIIG SEKLAEIYIPPVMQD FGGNFGGIEGWFPYVFALLFLLVRPEGLFGERH Sbjct: 241 GAIAGGLIIGVSEKLAEIYIPPVMQDMFGGNFGGIEGWFPYVFALLFLLVRPEGLFGERH 300 Query: 301 IDRV 304 IDRV Sbjct: 301 IDRV 304 >ref|YP_997483.1| inner-membrane translocator [Verminephrobacter eiseniae EF01-2] gb|ABM58465.1| inner-membrane translocator [Verminephrobacter eiseniae EF01-2] Length = 304 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 276/304 (90%), Positives = 289/304 (95%) Query: 1 MQFFLEVTLSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMEKGMPM 60 M FF EV LSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLM+KG+PM Sbjct: 1 MLFFFEVLLSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMDKGLPM 60 Query: 61 WAAIIGAFVVMILVGLATERFVLRKLVNQPPITLFMATIGLTFFLEGLGPLLFGSEVRPI 120 WAAIIG+F+VMIL+ +ATER VLRKLVNQPPITLFMATIGL FFLEGLGPLLFG EVR I Sbjct: 61 WAAIIGSFMVMILLAIATERLVLRKLVNQPPITLFMATIGLAFFLEGLGPLLFGIEVRAI 120 Query: 121 DLGIVDEPIQSVMDSIGIGISKFDLFASGMVVALVAALALFFQKTKVGRALRAVADDHQA 180 DLGIVDEPI +MD +GIGISKFDLFASG V+ALVA LALFFQ+TK+GRALRAVADDHQA Sbjct: 121 DLGIVDEPIMPIMDRLGIGISKFDLFASGTVIALVALLALFFQRTKLGRALRAVADDHQA 180 Query: 181 ALSLGIPLQHIWAVVWGVAGFVALIAGLLWGSRNGVQFALTMTALKALPVLILGGFTSIP 240 ALSLGIPLQHIWAVVWGVAGFVAL+AGLLWGSRNGVQFALTMTALKALPVLILGGFTSIP Sbjct: 181 ALSLGIPLQHIWAVVWGVAGFVALVAGLLWGSRNGVQFALTMTALKALPVLILGGFTSIP 240 Query: 241 GAIVGGLIIGASEKLAEIYIPPVMQDAFGGNFGGIEGWFPYVFALLFLLVRPEGLFGERH 300 GAIVGGLIIGASEKLAEIYIPPV+Q AF GNFGGIEGWFPYVFALLFLLVRPEGLFGERH Sbjct: 241 GAIVGGLIIGASEKLAEIYIPPVLQGAFDGNFGGIEGWFPYVFALLFLLVRPEGLFGERH 300 Query: 301 IDRV 304 IDRV Sbjct: 301 IDRV 304 >ref|YP_004684147.1| high-affinity branched-chain amino acid transport system permease LivH [Cupriavidus necator N-1] gb|AEI75666.1| high-affinity branched-chain amino acid transport system permease protein LivH [Cupriavidus necator N-1] Length = 304 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 260/304 (85%), Positives = 286/304 (94%) Query: 1 MQFFLEVTLSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMEKGMPM 60 M FF E+ + GLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLM+KG+PM Sbjct: 1 MTFFFEILIGGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMDKGLPM 60 Query: 61 WAAIIGAFVVMILVGLATERFVLRKLVNQPPITLFMATIGLTFFLEGLGPLLFGSEVRPI 120 WAA+IGAFVVMILVG++TERFVLRKLVNQPPITLFMATIGL+FFLEGLGPLLFG+EVRPI Sbjct: 61 WAAVIGAFVVMILVGMSTERFVLRKLVNQPPITLFMATIGLSFFLEGLGPLLFGNEVRPI 120 Query: 121 DLGIVDEPIQSVMDSIGIGISKFDLFASGMVVALVAALALFFQKTKVGRALRAVADDHQA 180 +LGIVDEPI+S++ + I +SKFD+ A+ + LV +LALFFQ TKVGRALRAVADDHQA Sbjct: 121 NLGIVDEPIESILTNFNIVLSKFDIAAAAIAGVLVGSLALFFQYTKVGRALRAVADDHQA 180 Query: 181 ALSLGIPLQHIWAVVWGVAGFVALIAGLLWGSRNGVQFALTMTALKALPVLILGGFTSIP 240 ALSLGIPLQ+IWA+VWGVAGFVAL+AG+LWGSRNGVQFALT+TALKALPVLILGGFTS+P Sbjct: 181 ALSLGIPLQNIWAIVWGVAGFVALVAGMLWGSRNGVQFALTLTALKALPVLILGGFTSVP 240 Query: 241 GAIVGGLIIGASEKLAEIYIPPVMQDAFGGNFGGIEGWFPYVFALLFLLVRPEGLFGERH 300 GAIVGGLIIGASEKLAEIYIPPV Q FGGNFGGIEGWFPYVFALLFLLVRPEGLFGE+H Sbjct: 241 GAIVGGLIIGASEKLAEIYIPPVFQSMFGGNFGGIEGWFPYVFALLFLLVRPEGLFGEKH 300 Query: 301 IDRV 304 IDRV Sbjct: 301 IDRV 304