BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4747.p (230 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775975.1| cyclic nucleotide-binding protein [Herbaspir... 437 e-121 ref|YP_004753213.1| Crp/Fnr family transcriptional regulator [Co... 398 e-109 gb|EGW59827.1| putative transcriptional regulator, Crp/Fnr famil... 286 1e-75 ref|YP_003166853.1| Crp/Fnr family transcriptional regulator [Ca... 269 2e-70 ref|YP_004684143.1| CRP family transcriptional regulator [Cupria... 262 3e-68 >ref|YP_003775975.1| cyclic nucleotide-binding protein [Herbaspirillum seropedicae SmR1] gb|ADJ64067.1| cyclic nucleotide-binding protein [Herbaspirillum seropedicae SmR1] Length = 225 Score = 437 bits (1124), Expect = e-121, Method: Composition-based stats. Identities = 216/224 (96%), Positives = 220/224 (98%) Query: 7 KTSIRHMLSKSIWAQALTEEQLARVEAEVVSRKIPAGGYVCRKGDPVAHWIGVHEGLLKM 66 +TSIR ML+KSIWAQALTEEQLARVE EVVSRKIPAGGYVCRKGD V HWIGVHEGLLKM Sbjct: 2 ETSIRRMLAKSIWAQALTEEQLARVETEVVSRKIPAGGYVCRKGDAVTHWIGVHEGLLKM 61 Query: 67 SSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRRYDVVALRESELLYMPKATYLWLLDNSI 126 SSVSPEGKTVSFAGMANGGWLGEGSLLKDEPR+YDVVALRESELLYMPKATY+WLLDNSI Sbjct: 62 SSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRESELLYMPKATYIWLLDNSI 121 Query: 127 PFNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEEV 186 PFNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEEV Sbjct: 122 PFNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEEV 181 Query: 187 GNLSGTSRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQFPG 230 GNLSGTSRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQFPG Sbjct: 182 GNLSGTSRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQFPG 225 >ref|YP_004753213.1| Crp/Fnr family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK62390.1| transcriptional regulator, Crp/Fnr family [Collimonas fungivorans Ter331] Length = 232 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 195/222 (87%), Positives = 208/222 (93%) Query: 7 KTSIRHMLSKSIWAQALTEEQLARVEAEVVSRKIPAGGYVCRKGDPVAHWIGVHEGLLKM 66 +TSI+ ML+K++WA++LT+ QLARVEAE+ SRKI G +VC KGDPV HWIGVHEGLLKM Sbjct: 9 ETSIQDMLAKTMWARSLTDAQLARVEAEMFSRKIAGGAFVCHKGDPVTHWIGVHEGLLKM 68 Query: 67 SSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRRYDVVALRESELLYMPKATYLWLLDNSI 126 SSVSPEGKTVSFAGMANGGWLGEGSLLK EPR+YDVVALR+SELLYMPKATYLWLLDNSI Sbjct: 69 SSVSPEGKTVSFAGMANGGWLGEGSLLKSEPRKYDVVALRDSELLYMPKATYLWLLDNSI 128 Query: 127 PFNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEEV 186 FNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIG LQISQEEV Sbjct: 129 QFNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGRELQISQEEV 188 Query: 187 GNLSGTSRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQF 228 GNLSG SRQRANQALQVLEKAGLLKVDYGSITI DL+GLRQF Sbjct: 189 GNLSGASRQRANQALQVLEKAGLLKVDYGSITILDLDGLRQF 230 >gb|EGW59827.1| putative transcriptional regulator, Crp/Fnr family [Dechlorosoma suillum PS] Length = 224 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 133/220 (60%), Positives = 174/220 (79%) Query: 9 SIRHMLSKSIWAQALTEEQLARVEAEVVSRKIPAGGYVCRKGDPVAHWIGVHEGLLKMSS 68 ++ +L + W + LT E+ AR+EA R+IPAGG+VC KG+PV +W+GV +GL+K++S Sbjct: 3 TLSELLHSTTWGRELTGEEFARIEAGTFVRRIPAGGFVCYKGEPVDYWLGVIDGLVKIAS 62 Query: 69 VSPEGKTVSFAGMANGGWLGEGSLLKDEPRRYDVVALRESELLYMPKATYLWLLDNSIPF 128 GKT +F G+ GGW GEGS+LK+EPRRYDVVALR+S++ M + T+ WLLD+SIPF Sbjct: 63 HGVTGKTATFTGVPAGGWFGEGSMLKNEPRRYDVVALRDSQVACMSRTTFQWLLDHSIPF 122 Query: 129 NRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEEVGN 188 NRFL+ QLNERL FI VE DR+LE DAR+ARC+A+LFNP L PGIG LQISQEE+G Sbjct: 123 NRFLLNQLNERLGQFIGRVEMDRLLETDARIARCVASLFNPVLYPGIGPQLQISQEEIGY 182 Query: 189 LSGTSRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQF 228 L+G SRQRANQAL++LE+ GLL+V+YG +T+ DLEGLR+F Sbjct: 183 LAGVSRQRANQALKLLEEHGLLRVEYGGVTVIDLEGLRRF 222 >ref|YP_003166853.1| Crp/Fnr family transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gb|ACV34924.1| transcriptional regulator, Crp/Fnr family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 230 Score = 269 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 128/228 (56%), Positives = 171/228 (75%) Query: 1 MTTETSKTSIRHMLSKSIWAQALTEEQLARVEAEVVSRKIPAGGYVCRKGDPVAHWIGVH 60 M E S+ ML S WA+ L+ ++L +V + R IPAGGYVC KG+ V +W+G+ Sbjct: 1 MLIEPRIQSLDDMLCASCWARQLSADELDQVRRDTFVRTIPAGGYVCMKGEAVDYWLGIV 60 Query: 61 EGLLKMSSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRRYDVVALRESELLYMPKATYLW 120 +GL KM+S GK SF G+++G W GEGSL+KDEPRRYDV+ALRES + YM ++ + Sbjct: 61 DGLAKMASNWRTGKATSFVGLSSGSWFGEGSLMKDEPRRYDVIALRESRIAYMKRSRFQH 120 Query: 121 LLDNSIPFNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQ 180 LLD+SIPFNRFL+ QLNERL+ FI ++E++R+L+ D+R+ARCLA++FNP L PG L L+ Sbjct: 121 LLDHSIPFNRFLLLQLNERLSQFIGMIEHERLLDSDSRLARCLASMFNPLLYPGSSLELR 180 Query: 181 ISQEEVGNLSGTSRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQF 228 ISQEE+G L+G SRQR NQAL LE+AGLL++DYG++TI DL GLR F Sbjct: 181 ISQEEIGLLAGISRQRVNQALHKLEEAGLLRIDYGTLTILDLAGLRSF 228 >ref|YP_004684143.1| CRP family transcriptional regulator [Cupriavidus necator N-1] gb|AEI75662.1| transcriptional regulator CRP family [Cupriavidus necator N-1] Length = 222 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 120/215 (55%), Positives = 164/215 (76%) Query: 14 LSKSIWAQALTEEQLARVEAEVVSRKIPAGGYVCRKGDPVAHWIGVHEGLLKMSSVSPEG 73 + + +WA L+ EQ RV + + G YVC KGD HW+GV EG++K+++VSP G Sbjct: 6 VDRCVWAADLSPEQRERVRRAMFVHEYTQGDYVCHKGDMAEHWMGVLEGIVKITTVSPSG 65 Query: 74 KTVSFAGMANGGWLGEGSLLKDEPRRYDVVALRESELLYMPKATYLWLLDNSIPFNRFLV 133 K+V+F G+ GGW GEG++LK E R+YDV+ALR S + ++P+ T+LWLLD S+PF RFL+ Sbjct: 66 KSVTFTGVPTGGWFGEGAVLKSEIRKYDVMALRRSTIAFLPRDTFLWLLDTSLPFTRFLL 125 Query: 134 TQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEEVGNLSGTS 193 TQ NERL FI+ VEY+R+L+ D+RVAR +++LFN +L PGIG L+ISQEE+G L+G S Sbjct: 126 TQFNERLGQFIAAVEYERLLDIDSRVARAVSSLFNEHLYPGIGTTLEISQEEIGLLAGIS 185 Query: 194 RQRANQALQVLEKAGLLKVDYGSITINDLEGLRQF 228 RQRANQAL+VLE+ GL++VDYG I + DLEGLRQ+ Sbjct: 186 RQRANQALKVLEQQGLVRVDYGVIEVLDLEGLRQY 220