BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4746.p         (151 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775976.1| two component response regulator protein [He...   276   9e-73
gb|EDZ39225.1| Putative response regulator receiver protein [Lep...   116   1e-24
gb|EAY55887.1| putative response regulator receiver protein [Lep...   114   3e-24
ref|YP_003523953.1| response regulator receiver protein [Siderox...   112   2e-23
ref|YP_004290318.1| response regulator receiver protein [Methano...   110   6e-23

>ref|YP_003775976.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ64068.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 151

 Score =  276 bits (705), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 148/151 (98%), Positives = 149/151 (98%)

Query: 1   MDIEQYDIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYASRKDLHP 60
           MDIEQYDIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYA R+DLHP
Sbjct: 1   MDIEQYDIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYAQRRDLHP 60

Query: 61  YLILLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKST 120
           YLILLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKST
Sbjct: 61  YLILLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKST 120

Query: 121 DPKEFMGTVADTGIYWRNRNRPARNEEGAGR 151
           DPKEFMGTV DTGIYWRNRNRPARNEEGAGR
Sbjct: 121 DPKEFMGTVVDTGIYWRNRNRPARNEEGAGR 151


>gb|EDZ39225.1| Putative response regulator receiver protein [Leptospirillum sp.
           Group II '5-way CG']
          Length = 148

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/140 (42%), Positives = 86/140 (61%), Gaps = 1/140 (0%)

Query: 3   IEQYDIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGE-YASRKDLHPY 61
           +E  +I+LV+D+P+ AELTR AL      + +TW  D E A  + +  E +  R D  P 
Sbjct: 5   VESVEILLVEDNPDDAELTRRALQKHHFINMVTWVKDGEEALAYLYGSEKFPDRPDRPPR 64

Query: 62  LILLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKSTD 121
           LILLD  LP + G + L+ IKS+    HIPVVM +SS+++RD+  +Y LG N Y+VK  +
Sbjct: 65  LILLDFKLPKLDGIEVLRRIKSDENLKHIPVVMLTSSNEERDLVDAYRLGVNSYIVKPVE 124

Query: 122 PKEFMGTVADTGIYWRNRNR 141
            +EF+ TV+  G YW   NR
Sbjct: 125 FEEFVKTVSGIGFYWVLTNR 144


>gb|EAY55887.1| putative response regulator receiver protein [Leptospirillum
           rubarum]
          Length = 148

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/140 (42%), Positives = 86/140 (61%), Gaps = 1/140 (0%)

Query: 3   IEQYDIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFF-QGEYASRKDLHPY 61
           +E  +I+LV+D+P+ AELTR AL      + +TW  D E A  + +   ++  R D  P 
Sbjct: 5   VESVEILLVEDNPDDAELTRRALQKHHFINMVTWVKDGEEALAYLYGTKKFPDRPDRPPR 64

Query: 62  LILLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKSTD 121
           LILLD  LP + G + L+ IKS+    HIPVVM +SS+++RD+  +Y LG N Y+VK  +
Sbjct: 65  LILLDFKLPKLDGIEVLRRIKSDENLKHIPVVMLTSSNEERDLVDAYRLGVNSYIVKPVE 124

Query: 122 PKEFMGTVADTGIYWRNRNR 141
            +EF+ TV+  G YW   NR
Sbjct: 125 FEEFVKTVSGIGFYWVLTNR 144


>ref|YP_003523953.1| response regulator receiver protein [Sideroxydans lithotrophicus
           ES-1]
 gb|ADE11566.1| response regulator receiver protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 151

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/142 (42%), Positives = 92/142 (64%), Gaps = 2/142 (1%)

Query: 3   IEQYDIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFF-QGEYASRKDLH-P 60
           +++ +I+LV+D+P  AEL   AL    LA+KL W  D   A +F F +G Y+ R+  + P
Sbjct: 5   VKEVEILLVEDNPTDAELAIRALKRSNLANKLVWVKDGAEALDFIFAKGAYSDRQVANGP 64

Query: 61  YLILLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKST 120
            +ILLDL LP + G + L+++K++A T  IPVV+ +SS + RD+ +SY+LG N Y+ K  
Sbjct: 65  KVILLDLRLPKVDGMEVLRMVKADARTHTIPVVVLTSSKEDRDVAESYQLGVNSYISKPV 124

Query: 121 DPKEFMGTVADTGIYWRNRNRP 142
           +  EF  TV++ G+YW   NRP
Sbjct: 125 EFDEFAKTVSELGLYWLLVNRP 146


>ref|YP_004290318.1| response regulator receiver protein [Methanobacterium sp. AL-21]
 gb|ADZ09346.1| response regulator receiver protein [Methanobacterium sp. AL-21]
          Length = 153

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 64/145 (44%), Positives = 91/145 (62%), Gaps = 4/145 (2%)

Query: 1   MDIEQYDIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFF-QGEYASR--KD 57
           M +++ +I+LV+D+P  AELT  AL  + L +KL W  D   A +F F +GE++ R  +D
Sbjct: 1   MSLDETEILLVEDNPTDAELTMRALKKKNLINKLVWVKDGAEALDFIFAKGEFSDRNPED 60

Query: 58  LHPYLILLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVV 117
           L P LILLDL +P + G + L  IK N  T +IPVV+ +SS + RDI +SY+LG N YV 
Sbjct: 61  L-PKLILLDLRMPKVDGLEVLHKIKENENTKNIPVVVLTSSKEDRDIVESYKLGVNSYVS 119

Query: 118 KSTDPKEFMGTVADTGIYWRNRNRP 142
           K  +  EF+  V+  G YW   N+P
Sbjct: 120 KPVEFDEFIEAVSTMGFYWILINKP 144