BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4745.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775977.1| LuxR family two component response regulator... 402 e-110 ref|ZP_03632499.1| two component transcriptional regulator, LuxR... 235 4e-60 ref|YP_003796624.1| LuxR family response regulator [Candidatus N... 214 9e-54 ref|YP_001817717.1| two component LuxR family transcriptional re... 211 7e-53 ref|YP_522173.1| two component LuxR family transcriptional regul... 202 3e-50 >ref|YP_003775977.1| LuxR family two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64069.1| LuxR family two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 216/216 (100%), Positives = 216/216 (100%) Query: 1 MLTRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKG 60 MLTRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKG Sbjct: 1 MLTRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKG 60 Query: 61 MNGLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVK 120 MNGLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVK Sbjct: 61 MNGLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVK 120 Query: 121 HGRQYLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSA 180 HGRQYLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSA Sbjct: 121 HGRQYLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSA 180 Query: 181 KTIETHRAQLMERLDIRDVPGLVRYAIRTGIATPDK 216 KTIETHRAQLMERLDIRDVPGLVRYAIRTGIATPDK Sbjct: 181 KTIETHRAQLMERLDIRDVPGLVRYAIRTGIATPDK 216 >ref|ZP_03632499.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gb|EEF57190.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 217 Score = 235 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 121/210 (57%), Positives = 161/210 (76%) Query: 4 RIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMNG 63 RI+LADDH L+R+GI++LL MPGVEVVGEA+DG E + ++ L+P +VL+DIAM G+NG Sbjct: 5 RILLADDHTLLRAGIRSLLEKMPGVEVVGEAADGREALSLVKALQPGVVLMDIAMSGLNG 64 Query: 64 LEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHGR 123 LEA R+ E+P+ R ++LSM+ +EEYV+Q L AGA GYL KD+A ELE A+ V G Sbjct: 65 LEATARIVKEFPSSRVIILSMHANEEYVLQTLRAGAAGYLLKDAATAELELAIQAVSRGD 124 Query: 124 QYLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKTI 183 YL IS+ +++Y+ R+ +P+E LTPRQREILQLIAEG +TKE+A+ LN+S KT+ Sbjct: 125 TYLSPAISKRVIEDYLGRINGQKSPMEQLTPRQREILQLIAEGKSTKEMAFLLNLSVKTV 184 Query: 184 ETHRAQLMERLDIRDVPGLVRYAIRTGIAT 213 ETHR QLM+RL I DVPGLVRYA+R G+ + Sbjct: 185 ETHRTQLMDRLGIHDVPGLVRYAMRMGLIS 214 >ref|YP_003796624.1| LuxR family response regulator [Candidatus Nitrospira defluvii] emb|CBK40698.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 216 Score = 214 bits (544), Expect = 9e-54, Method: Composition-based stats. Identities = 116/212 (54%), Positives = 150/212 (70%) Query: 4 RIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMNG 63 R++L +DH LVR+G + LL + G+ V+GE SDG ++ +L PD+VL+DIAM GMNG Sbjct: 5 RVLLVEDHTLVRAGFRVLLEKIEGILVIGEVSDGRSATKLAKELDPDVVLMDIAMAGMNG 64 Query: 64 LEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHGR 123 LEA RR+R E P + LMLSMY +EEY+ +AL AGA GYL KD+ ELE A+ V Sbjct: 65 LEATRRIRQESPRTKILMLSMYTNEEYLKEALRAGAAGYLLKDADRNELELAIKAVWRSE 124 Query: 124 QYLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKTI 183 YL +++ A+D Y ++ P+ LT RQREILQLIAEG +TK+IA +L++S KT+ Sbjct: 125 TYLTPSMTKFAVDAYCQQGEAQTGPLARLTGRQREILQLIAEGCSTKQIAQRLDLSVKTV 184 Query: 184 ETHRAQLMERLDIRDVPGLVRYAIRTGIATPD 215 ETHRAQLMERLDI DVPGLVR AIRTG+ D Sbjct: 185 ETHRAQLMERLDIHDVPGLVRLAIRTGLVQSD 216 >ref|YP_001817717.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gb|ACB74117.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 219 Score = 211 bits (536), Expect = 7e-53, Method: Composition-based stats. Identities = 110/213 (51%), Positives = 149/213 (69%), Gaps = 1/213 (0%) Query: 4 RIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMNG 63 +I+LADDHALVR+GI+ LL +PGV +VGEA DG E + ++ PD+ ++DI M G+NG Sbjct: 6 KIVLADDHALVRAGIRTLLEKLPGVTIVGEAGDGRETVTLVHTFAPDIAIMDITMPGLNG 65 Query: 64 LEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHGR 123 +A R+ E+P + L+LSM+ +E+YV+QAL AGA GYL KD+A EL+ AL V+ G Sbjct: 66 FDATARIAREHPRTKVLILSMHTAEDYVLQALRAGATGYLLKDAATAELQLALNAVRKGE 125 Query: 124 QYLDSHISREALDNYMKRVAQ-NGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKT 182 YL IS+ L + ++ P + LTPR REI+QLIAEG +TKEIA+ LN+S KT Sbjct: 126 TYLSPSISKSVLARFRQQEQDPRAEPTKALTPRMREIVQLIAEGRSTKEIAFLLNLSVKT 185 Query: 183 IETHRAQLMERLDIRDVPGLVRYAIRTGIATPD 215 IETHR LM RL + DV G+VRYA+RTG+ + D Sbjct: 186 IETHRMHLMARLGLHDVAGVVRYALRTGLISAD 218 >ref|YP_522173.1| two component LuxR family transcriptional regulator [Rhodoferax ferrireducens T118] gb|ABD68642.1| two component transcriptional regulator, LuxR family [Rhodoferax ferrireducens T118] Length = 217 Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 114/210 (54%), Positives = 154/210 (73%) Query: 4 RIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMNG 63 R++LADDH LVR+G++ LL +MP VEVVGEA+DG ++ + +L+P LV++DIAM G+NG Sbjct: 5 RVLLADDHTLVRAGLRKLLESMPDVEVVGEAADGLALLALAAELQPQLVMMDIAMPGLNG 64 Query: 64 LEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHGR 123 LEA RL +PTIR L+LSM+ +EEYV QAL GA YL KD A ELE AL V G Sbjct: 65 LEATARLAKAWPTIRVLILSMHQNEEYVRQALRNGAAAYLLKDCAPLELELALKAVLRGE 124 Query: 124 QYLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKTI 183 YL +S+ + +Y++R+ P LTPRQRE+LQLIAEG +TKEIA +L+++ KT+ Sbjct: 125 TYLSPAVSKGVVSDYVQRLRGEAQPGAQLTPRQREVLQLIAEGQSTKEIARRLDLAVKTV 184 Query: 184 ETHRAQLMERLDIRDVPGLVRYAIRTGIAT 213 E+HR+QLM++LDI +V GLVRYA+ G+ T Sbjct: 185 ESHRSQLMKQLDIHEVAGLVRYAMHVGVVT 214