BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4744.p (487 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775978.1| multi-sensor signal transduction histidine k... 853 0.0 ref|YP_002354967.1| multi-sensor signal transduction histidine k... 251 2e-64 ref|ZP_03632498.1| multi-sensor signal transduction histidine ki... 223 8e-56 ref|ZP_03627608.1| putative PAS/PAC sensor protein [bacterium El... 222 1e-55 ref|ZP_03631703.1| multi-sensor signal transduction histidine ki... 211 3e-52 >ref|YP_003775978.1| multi-sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ64070.1| multi-sensor signal transduction histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 475 Score = 853 bits (2203), Expect = 0.0, Method: Composition-based stats. Identities = 450/475 (94%), Positives = 461/475 (97%) Query: 13 MEEDAVLMVRELKRGGFDPTWERVDDEQALLAALQAQRWDIVISDYSMPMFSGVEALKLV 72 MEEDA LMVRELKRGGF+P WERVDDEQALLAALQAQ WDIVISDYSMPMFSGVEALKLV Sbjct: 1 MEEDAFLMVRELKRGGFEPAWERVDDEQALLAALQAQPWDIVISDYSMPMFSGVEALKLV 60 Query: 73 KADNDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLKSAITRLPIAVDRELRDAQARRKQRA 132 KA NDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLKSAI RLP AVDRELRDAQARRKQRA Sbjct: 61 KAHNDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLKSAIGRLPHAVDRELRDAQARRKQRA 120 Query: 133 SAAALREMQARFNAFMNAAPMPTWIKDAQLRYSYVNPAQSAFYGMTPHDMDGMTDAELMT 192 SA ALREMQARFNAFMNAAPMPTWIKDAQLRYSYVNPAQSAFYGMTP DMDG+TD ELM+ Sbjct: 121 SAQALREMQARFNAFMNAAPMPTWIKDAQLRYSYVNPAQSAFYGMTPGDMDGLTDLELMS 180 Query: 193 TGGAEASREYDRKVLEEKCELHTQETVFDHNHNARILDVVRFPISGEGKGDMVAGLAIDV 252 +G A AS+E DRKVLE+KCELHTQETVFDHNHNARILDVVRFPISGEGKGDMVAGLAIDV Sbjct: 181 SGAAAASQENDRKVLEQKCELHTQETVFDHNHNARILDVVRFPISGEGKGDMVAGLAIDV 240 Query: 253 TEREQSRRELELAIQRQQLLSSRVIEVQERERQHLARGLHDDVGQSLTALKINLETIKKT 312 TEREQSRR+LELAIQRQQLLSSRVIEVQERERQHLARGLHDDVGQSLTALKINLETIKK Sbjct: 241 TEREQSRRDLELAIQRQQLLSSRVIEVQERERQHLARGLHDDVGQSLTALKINLETIKKM 300 Query: 313 GSLEGPSLQNGIDIVTAVLAQVRSLSLDLRPPQLDNLGLIAALRSYVEQKSKLANVNGWF 372 GSLEGPSLQNGIDIVTAVLAQVRSLSLDLRPPQLDNLGLIAALRSYVEQKSKLANVNGWF Sbjct: 301 GSLEGPSLQNGIDIVTAVLAQVRSLSLDLRPPQLDNLGLIAALRSYVEQKSKLANVNGWF 360 Query: 373 ESSGHDEELHHDIENTAFRIVQEAVTNILRHAKCQNIWVKIDRQQDQVYLSIRDDGKGFD 432 ESSGHDE+LHHDIENTAFRIVQEAVTNILRHA+CQNIWVKIDRQ DQVYLSIRDDG+GFD Sbjct: 361 ESSGHDEQLHHDIENTAFRIVQEAVTNILRHARCQNIWVKIDRQHDQVYLSIRDDGRGFD 420 Query: 433 IERARSNAISGTSFGLLNMEERAVLVGGSMDITSAPGAGTEIVMHLPVAPIVRRM 487 IERARSNAISGTSFGLLNMEERAVLVGGSM+ITSAPGAGTEIVMHLPVAPIVRRM Sbjct: 421 IERARSNAISGTSFGLLNMEERAVLVGGSMEITSAPGAGTEIVMHLPVAPIVRRM 475 >ref|YP_002354967.1| multi-sensor signal transduction histidine kinase [Thauera sp. MZ1T] gb|ACK54071.1| multi-sensor signal transduction histidine kinase [Thauera sp. MZ1T] Length = 484 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 172/477 (36%), Positives = 264/477 (55%), Gaps = 9/477 (1%) Query: 10 VEDMEEDAVLMVRELKRGGFDPTWERVDDEQALLAALQAQRWDIVISDYSMPMFSGVEAL 69 VED E DA+L++R L+R GF RV+D + AAL +RWD+V+SD+++P F AL Sbjct: 2 VEDSESDALLVLRALRRAGFALRHRRVEDGAGMRAALAGERWDVVLSDFNLPGFDARSAL 61 Query: 70 KLVKADNDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLKSAITRLPIAVDRELRDAQARRK 129 + A PFI+VSG IG++TA+E+M+ GA DY +K + RL A++REL +A+ R + Sbjct: 62 AELHASGLDLPFIVVSGTIGDETAIELMRRGAHDYLMKENLARLAPAIERELGEARVRAE 121 Query: 130 QRASAAALREMQARFNAFMNAAPMPTWIKDAQLRYSYVNPAQSAFYGMTPHDMDGMTDAE 189 +R + AAL + +A + W +D + + A +GM P + DA Sbjct: 122 RRRALAALHDSEAVLREAQRIGGVGQWRRDLPGGAPWCSDTLFALFGMAPVAGEDALDAL 181 Query: 190 LMTTGGAEASR--EYDRKVLEEKCELHTQETVFDHNHNAR-ILDVVRFPISGEGKGDMVA 246 L + R + R++ + + + + + R +L+ E + Sbjct: 182 LTRVHPDDLGRLLQAHRELAAGSERVELEYRIVHADGSLRYVLECAARSRGVEAATPRLI 241 Query: 247 GLAIDVTEREQSRRELELAIQRQQLLSSRVIEVQERERQHLARGLHDDVGQSLTALKINL 306 G DVT + + L A R + +S RV++ QE ER+ +A LHD +GQ+LTA+K++L Sbjct: 242 GTVHDVTAQRAAAEALRTANARLRQMSLRVLDAQEAERRAVAYELHDQIGQALTAVKLDL 301 Query: 307 ETIKKTGSLE-GPS---LQNGIDIVTAVLAQVRSLSLDLRPPQLDNLGLIAALRSYVEQK 362 + + T L+ GP+ L I LAQVR LSL+LRPPQLD +GL A+LR + E++ Sbjct: 302 QAM--TPHLDAGPAVARLAAAIHTTEEALAQVRGLSLNLRPPQLDYMGLEASLRWHAERE 359 Query: 363 SKLANVNGWFESSGHDEELHHDIENTAFRIVQEAVTNILRHAKCQNIWVKIDRQQDQVYL 422 A + F S + + FR++QEA+TN++RHA + + + + ++ L Sbjct: 360 CARAGLALDFAGSVGEFKAEERCAIVCFRLLQEALTNVVRHAAAKRVRIALSAADGRLDL 419 Query: 423 SIRDDGKGFDIERARSNAISGTSFGLLNMEERAVLVGGSMDITSAPGAGTEIVMHLP 479 I DDG+GFD+ RAR + G S GLL MEERA L+GG + I +APGAGT I + LP Sbjct: 420 EIADDGRGFDLARARRRMLEGASVGLLGMEERAALIGGEVHIDAAPGAGTRIRVSLP 476 >ref|ZP_03632498.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] gb|EEF57189.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] Length = 656 Score = 223 bits (567), Expect = 8e-56, Method: Composition-based stats. Identities = 136/372 (36%), Positives = 211/372 (56%), Gaps = 20/372 (5%) Query: 120 ELRDAQARRKQRASAAALREMQARFNAFMNAAPMPTWIKDAQLRYSYVNPAQSAFYGMTP 179 EL + RK+ + ALR+ + RF + M +I + R+ Y NP + +G Sbjct: 282 ELAEQITERKR--TEEALRQSEERFRIISEQSLMGIYIIQGE-RFKYANPKFAEMFG--- 335 Query: 180 HDMDGMTDAELMTTGGAEASREYDRKVLEEKCELHTQETV-------FDHNHNARILDVV 232 +D+ GM L + + E +R ++ E L + + +A +L + Sbjct: 336 YDVSGM----LSLSSVFDVIVEKERPIVSENVRLRLEGQIEGIRYRFHGQRKDAGLLTIE 391 Query: 233 RFPISGEGKGD-MVAGLAIDVTEREQSRRELELAIQRQQLLSSRVIEVQERERQHLARGL 291 E G+ ++ G A DVTERE EL+ ++ Q LS R++E+QE ER+H+AR L Sbjct: 392 AHGFKAELNGEPVILGTAQDVTEREMDEAELKRTTEQLQTLSRRLLELQESERRHIAREL 451 Query: 292 HDDVGQSLTALKINLETIKKTGSLEG--PSLQNGIDIVTAVLAQVRSLSLDLRPPQLDNL 349 HD++GQ LTALKINL+ +++ + P L + I IV L QVR+LSLDLRP LD+L Sbjct: 452 HDEIGQGLTALKINLQAVQRMANSTAFSPRLLDSIGIVDKTLRQVRNLSLDLRPSMLDDL 511 Query: 350 GLIAALRSYVEQKSKLANVNGWFESSGHDEELHHDIENTAFRIVQEAVTNILRHAKCQNI 409 GL AALR Y +Q+++ A + F + + +E FR+ QEA+TNI+RHA+ QN+ Sbjct: 512 GLFAALRWYADQQAQRAGLRIQFAAEPMEMRQDPALETACFRVAQEALTNIVRHAEAQNV 571 Query: 410 WVKIDRQQDQVYLSIRDDGKGFDIERARSNAISGTSFGLLNMEERAVLVGGSMDITSAPG 469 + ++ + + L+IRDDG GFD+++ R + +G+S GLL MEERA L+GG ++ S PG Sbjct: 572 TIDLNVAEKDLQLTIRDDGIGFDMKKVREHVAAGSSLGLLGMEERASLMGGRVEFKSTPG 631 Query: 470 AGTEIVMHLPVA 481 GTE+ P++ Sbjct: 632 EGTEVYAWFPIS 643 >ref|ZP_03627608.1| putative PAS/PAC sensor protein [bacterium Ellin514] gb|EEF62145.1| putative PAS/PAC sensor protein [bacterium Ellin514] Length = 579 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 164/543 (30%), Positives = 260/543 (47%), Gaps = 68/543 (12%) Query: 1 MSIPLRVLFVEDMEEDAVLMVRELKRGGFDPTWERVDDEQALLAALQAQRWDIVISDYSM 60 MS PLRVL VED + DA LM+ ELKRGG+ P RVD+ + + +AL+ + WDIVISDY M Sbjct: 1 MSQPLRVLVVEDSDNDAQLMLWELKRGGYQPYAFRVDNPKEMESALEREEWDIVISDYVM 60 Query: 61 PMFSGVEALKLVKADNDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLKSAITRLPIAVDRE 120 P F+G++ALKL PFII+SG IGE AV MK+GA DY +K + RL AV+RE Sbjct: 61 PGFTGLDALKLFTKRGLDIPFIILSGHIGEDIAVLAMKSGAHDYIMKDKMARLVPAVERE 120 Query: 121 LRDAQARRKQRASAAALREMQARFNAFMNAAPMPTWI-----KDAQLRYSYVNPAQSAFY 175 LR+A R+ +R S ALRE + RF + ++ K+ R Y +PA + Sbjct: 121 LREAAVRKARRESDRALRESEERFRQLTENIDVVFFMFDQSGKEGPSRTLYTSPAYEHIW 180 Query: 176 GMTPHDMDGMTDAELMTTGGAEASREYDRKVLEEKCELHTQETVFDHNHNARILDVVRFP 235 G + + + A L+ + + + E+ E + + + D N N R + FP Sbjct: 181 GRSRERLKEDSRAWLVAVHPDDQKQILEDVPQMERGEFNGEFRIIDGNGNIRWIQYRSFP 240 Query: 236 ISGE-GKGDMVAGLAIDVTERE-----------------------------------QSR 259 + E G+ VAG+A D+T+R+ Q+R Sbjct: 241 VLNEQGQLYRVAGIAEDITKRKEAEHKLERNAQELSRMVHDLRCIDEQLRARNREISQAR 300 Query: 260 RELELAIQRQQL------------------LSSRVIEVQERERQHLARGLHDDVGQSLTA 301 ELE + + + L ++E+ E+ER+ + LHDD+ Q L Sbjct: 301 EELERRVHERTIDLTVANAELQCQIHERTRLEKELLEIAEKERRRIGFDLHDDLSQKLMG 360 Query: 302 LKINLETIK-KTGSLEGPSLQNGIDI---VTAVLAQVRSLSLDLRPPQLDNLGLIAALRS 357 + L+ ++ K + E P + + I + V+ +L+ + L L+ Sbjct: 361 ISFMLKALETKASNKELPKVADTRKIQELINEVINHTHNLAHNFSTLDSQGGDLALELKE 420 Query: 358 YVEQKSKLANVNGWFESSGHDEELHHDIENTAFRIVQEAVTNILRHAKCQNIWVKIDRQQ 417 K+ ++ F SSG L + ++I QEA +N ++H + +N+W+ I + Sbjct: 421 LAGNVKKMFQISCHFSSSGPLPTLQPNATVQLYKIAQEAASNAIKHGRAKNVWISITAHE 480 Query: 418 DQVYLSIRDDGKGFDIERARSNAISGTSFGLLNMEERAVLVGGSMDITSAPGAGTEIVMH 477 D++ L+IR+DG F + S+ + GL M RA ++G S+DI + GT + Sbjct: 481 DKLVLTIRNDGVPFPVTTGPSDRM-----GLRIMNSRASMIGASLDIRANGENGTLVSCQ 535 Query: 478 LPV 480 LP+ Sbjct: 536 LPL 538 >ref|ZP_03631703.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] gb|EEF58012.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] Length = 539 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 166/526 (31%), Positives = 259/526 (49%), Gaps = 61/526 (11%) Query: 1 MSIPLRVLFVEDMEEDAVLMVRELKRGGFDPTWERVDDEQALLAALQAQRWDIVISDYSM 60 MS +RVL +ED + DA L++ EL++ ++P +ERV+ A+L AL+ WD+VI+DY + Sbjct: 1 MSQAIRVLLIEDSDYDAALLLLELRQADYEPEYERVETAPAMLEALEKHPWDVVIADYVL 60 Query: 61 PMFSGVEALKLVKADNDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLKSAITRLPIAVDRE 120 P FSG ALKL++ PFIIVSG I E TAV MKAGA DY +K +TRL A++RE Sbjct: 61 PSFSGPAALKLLQERGIDLPFIIVSGHIDEDTAVASMKAGAHDYVMKDRLTRLVPAIERE 120 Query: 121 LRDAQARRKQRASAAALREMQARFNAFMNAAPMPTWIKDAQLRYSYVNPAQSAFYGMTPH 180 +++A+ RR+++ + A + Q A ++ P D + +++YVN SAF Sbjct: 121 MQEAEVRRERKKTEAKFAKEQTFRRAIEDSIPSGIAAVDLEGKHTYVN---SAFC----- 172 Query: 181 DMDGMTDAELMTT---------GGAEASREYDRKVLEEKCELHTQETVFDHNHNARILDV 231 +M G ++AEL+ T ++ R+ E K E F H N R DV Sbjct: 173 EMVGWSEAELLETRPPYPYWPAEEVATIQQALRQTTEGKNPGEGSELRFQH-QNGRRFDV 231 Query: 232 VRF--PISGEGKGDMVAGLA--IDVTEREQS----RR---------------------EL 262 + PI + G + LA D+TER+Q+ RR +L Sbjct: 232 LMLANPIK-DDHGRITGWLASVTDITERKQAQDALRRAHDELEKRVEERTADLVATNGKL 290 Query: 263 ELAIQRQQLLSSRVIEVQERERQHLARGLHDDVGQSLTALKINLE----TIKKTGSLEGP 318 E AIQ ++ L + ++E+ E+ER+ + LHDD+GQ L + + ++ +KK E Sbjct: 291 ENAIQERKRLENELLEITEKERRRIGLDLHDDLGQKLAGITLMMKGLEIGLKKKNLPEAE 350 Query: 319 SLQNGIDIVTAVLAQVRSLSLDLRPPQLDNLGLIAALRSYVEQKSKLANVNGWFESSGHD 378 +V + L+ DL +LD L +AL KL + F+ G Sbjct: 351 EAHRIQTLVNQAMHHASDLAHDLAIAELDEDNLPSALNQLAADIKKLFEIPCRFKHEGET 410 Query: 379 EELHHDIENTAFRIVQEAVTNILRHAKCQNIWVKIDRQQDQVYLSIRDDGKGFD--IERA 436 L + ++I QEA TN ++H K + + + + + + + L+IR+ G F I+R Sbjct: 411 PHLDRNTITQFYKISQEAATNAVKHGKAKQVSINLVNKDETLTLTIRNSGLPFPSMIDRN 470 Query: 437 RSNAISGTSFGLLNMEERAVLVGGSMDITSAPGAGTEIVMHLPVAP 482 R GL M RA VG S++I + GT + LP+ P Sbjct: 471 R-------GMGLRIMNYRASTVGASLEIKAGRPTGTIVTCTLPLRP 509