BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4743.p (600 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775979.1| two component sensor histidine kinase [Herba... 930 0.0 gb|EAY55888.1| Multi-sensor signal transduction histidine kinase... 361 2e-97 gb|EDZ39224.1| Multi-sensor signal transduction histidine kinase... 360 4e-97 ref|YP_001817834.1| multi-sensor signal transduction histidine k... 289 1e-75 ref|ZP_06485524.1| two-component system sensor protein [Xanthomo... 246 1e-62 >ref|YP_003775979.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ64071.1| two component sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 633 Score = 930 bits (2403), Expect = 0.0, Method: Composition-based stats. Identities = 489/596 (82%), Positives = 540/596 (90%) Query: 1 MPITRQSGLARASTGIFFLLALLLSLGVAAFSYHSVRDFERRAVWLQHSYTVLNKLEEAN 60 MPIT+QS LARASTGIFFLLALLLS+GVA FSYHSVRDFE+RAVWLQH++TV+N LEE N Sbjct: 24 MPITKQSQLARASTGIFFLLALLLSIGVAGFSYHSVRDFEQRAVWLQHTHTVINVLEETN 83 Query: 61 STLRDTVSSSRGFALSGEQEYRNNFESGVRHVNALLQDLRRLLSDNPRQAGLLGQTEDLV 120 S LR+TV +SRG+ LSG +EYR +FE+GVRHV AL+QDLRRL+SDN RQ L TEDLV Sbjct: 84 SALRETVGNSRGYVLSGNEEYRTSFEAGVRHVQALMQDLRRLMSDNERQIERLDSTEDLV 143 Query: 121 MQRLTLSRQLMELSQEEGRARVLEGKELGERIRTGFEQMKGNENALLATRAHDTAMSANL 180 QRL LSR+++ L E+ R RVLEGK L + IR F +MKGNENALLA R+ DT+ SA+L Sbjct: 144 NQRLALSREILALRPEQARERVLEGKALSDEIRRRFAEMKGNENALLAKRSQDTSASADL 203 Query: 181 TIFMVISGSLLSIALLLLVYRKLRKEMSRRVEAQQRAQAYSDEIEDLYNNAPCGYHSVDE 240 TIFMV+SGSLLS+ALL+LVY KLR+EM RR++AQQRAQAYSDEIEDLYNNAPCGYHSVDE Sbjct: 204 TIFMVVSGSLLSMALLVLVYSKLRREMDRRIDAQQRAQAYSDEIEDLYNNAPCGYHSVDE 263 Query: 241 TDKRIIKINDTELKWLGYTREQVVGRMTQADLLAPASAARYERELQPQFLLRREISGIDL 300 +DK+IIKINDTELKWLGYTREQVVGRMT DLLAPASA RY RELQPQF+L+REISGIDL Sbjct: 264 SDKKIIKINDTELKWLGYTREQVVGRMTHTDLLAPASAERYLRELQPQFMLKREISGIDL 323 Query: 301 NFRRADGSEFTALVNATAIPSRDNSKLISRTVIYDISERKRAEEEIEALNADLERQAQHL 360 N+RRADGSEFTALVNATAIPSRD SKLISRTVIYDIS+RKRAEEEIEALNADL+RQA HL Sbjct: 324 NYRRADGSEFTALVNATAIPSRDRSKLISRTVIYDISDRKRAEEEIEALNADLKRQALHL 383 Query: 361 HNVNKELESFSYSVSHDLRAPLRAISGYAMILEEDYAHAIDEKGREQLQVIRRNVRKMDA 420 H+VNKELESFSYSVSHDLRAPLRAISGYAMILEEDYA AIDEKGREQLQVIRRNVRKMD Sbjct: 384 HSVNKELESFSYSVSHDLRAPLRAISGYAMILEEDYADAIDEKGREQLQVIRRNVRKMDE 443 Query: 421 LINDLLKLAKSTTGELTLQRFSMDELVAQVVAGLQQENPGVIFDVPRLEGAVANRGLIAQ 480 LINDLLKLAKSTTGELTL+RFSMD+LV QV+AGL++ENP V+FDVP LEGAVANRGLI Q Sbjct: 444 LINDLLKLAKSTTGELTLERFSMDDLVRQVIAGLRRENPNVLFDVPPLEGAVANRGLITQ 503 Query: 481 VWENLLSNAVKFSSKSEQPRVCVTMQANADEYVYGVHDNGVGFDMRYAHKLFGTFQRLHR 540 VWENLLSNAVKFSSKSEQP V V+MQ +EY+YGVHDNGVGFDMRYAHKLFGTFQRLHR Sbjct: 504 VWENLLSNAVKFSSKSEQPAVRVSMQVEPEEYIYGVHDNGVGFDMRYAHKLFGTFQRLHR 563 Query: 541 QEEYAGTGIGLALVQRIVVRHTGRVWAESKPREGASFYFALPRKGVLPSLGEARRS 596 QEEYAGTGIGLALVQRIV+RHTGRVWA+SKP EGASFYF+LPRKG+ PSL E R + Sbjct: 564 QEEYAGTGIGLALVQRIVIRHTGRVWAQSKPGEGASFYFSLPRKGLSPSLVERREA 619 >gb|EAY55888.1| Multi-sensor signal transduction histidine kinase [Leptospirillum rubarum] Length = 596 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 227/585 (38%), Positives = 333/585 (56%), Gaps = 17/585 (2%) Query: 16 IFFLLALLLSLGVAAFSYHSVRDFERRAVWLQHSYTVLNKLEEANSTLRDTVSSSRGFAL 75 IF + +LL +G+ S H + F + + ++HS+ VL ++ S L+D + RG+ + Sbjct: 16 IFLAIGILLWMGIV--SLHFLGSFLQESDRVEHSWMVLTSIDRLFSELQDAETGERGYLI 73 Query: 76 SGEQEYRNNFESGVRHVNALLQDLRRLLSDNPRQAGLLGQTEDLVMQRLTLSRQLMELSQ 135 + + + ++S + V L DL L+SD P Q + L+ +RL L + L + Sbjct: 74 TRNPSFLSPYQSAEKEVRGHLHDLEHLVSDRPSQEMRAMELGKLIDKRLFLLGNGVALGR 133 Query: 136 EEGRAR-------VLEGKELGERIRTGFEQMKGNENALLATRAHDTAMSANLTIFMVISG 188 +L GKE+ ++IR + MK +E L R+ + + +V G Sbjct: 134 SGAFPHRDALLMVMLRGKEVMDQIRHLTQSMKSSEYRRLRRRSLLFYRTRKKVLPLVGGG 193 Query: 189 SLLSIALLLLVYRKLRKEMSRRVEAQQRAQAYSDEIEDLYNNAPCGYHSVDETDKRIIKI 248 S+ +++L L +E+ RRV A+ +A+ Y++E+ DLY+ APCGYHSVD + ++I Sbjct: 194 LAASVLMIVLSSLFLSREIDRRVRAEHKARQYAEEVRDLYDYAPCGYHSVDH-EGTFVRI 252 Query: 249 NDTELKWLGYTREQVVGRMTQADLLAPASAARYERELQPQFLLRRE-ISGIDLNFRRADG 307 N+TEL WLGY RE+V GR +LL+P Y+ Q +LR E + + L F R DG Sbjct: 253 NETELSWLGYKREEVEGRKRIFELLSPEDLPLYQNAFQG--MLRGEPVRDLRLRFLRKDG 310 Query: 308 SEFTALVNATAIPSRDNSKLISRTVIYDISERKRAEEEIEALNADLERQAQHLHNVNKEL 367 + AL+NA+ I L +R V+ D++++ EE+I LN L + L N EL Sbjct: 311 TVLPALLNASVIRDAFGRFLSTRGVLLDMTQKLIDEEKILDLNRTLSERNMQLEVTNGEL 370 Query: 368 ESFSYSVSHDLRAPLRAISGYAMILEEDYAHAIDEKGREQLQVIRRNVRKMDALINDLLK 427 E FSYSVSHDLRAPLR+I G++ IL+EDYA +D +G + VIR N RKM LI+DLL Sbjct: 371 EGFSYSVSHDLRAPLRSIDGFSRILQEDYAGKLDAEGERVIGVIRNNTRKMSNLIDDLLA 430 Query: 428 LAKSTTGELTLQRFSMDELVAQ-VVAGLQQ---ENPGVIFDVPRLEGAVANRGLIAQVWE 483 ++ M+ L+ + ++ G+ + GV + L A + L+AQVW Sbjct: 431 FSRLGKKAFAWSLVDMEALIREDILPGILSGGGKGAGVEVTLSPLPRAWGDSTLLAQVWT 490 Query: 484 NLLSNAVKFSSKSEQPRVCVTMQANADEYVYGVHDNGVGFDMRYAHKLFGTFQRLHRQEE 543 NLLSNAVKFS K E+P V V + E VY V DNGVGFDM+Y KLF FQRLH Q E Sbjct: 491 NLLSNAVKFSEKREKPSVRVEGKVEMGEVVYTVRDNGVGFDMQYYDKLFKVFQRLHAQAE 550 Query: 544 YAGTGIGLALVQRIVVRHTGRVWAESKPREGASFYFALPRKGVLP 588 + GTG+GLA+VQR++ RH GRVWAES+ EGA+F+F+LP + P Sbjct: 551 FPGTGVGLAIVQRVIARHGGRVWAESQLNEGAAFHFSLPARDGPP 595 >gb|EDZ39224.1| Multi-sensor signal transduction histidine kinase [Leptospirillum sp. Group II '5-way CG'] Length = 596 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 226/587 (38%), Positives = 340/587 (57%), Gaps = 21/587 (3%) Query: 16 IFFLLALLLSLGVAAFSYHSVRDFERRAVWLQHSYTVLNKLEEANSTLRDTVSSSRGFAL 75 IF + +LL +G+ + + + F + + ++HS+ VL ++ S L+D + RG+ + Sbjct: 16 IFLAIGILLWMGIVSLRF--LGSFLQESDRVEHSWMVLTSIDRLFSELQDAETGERGYII 73 Query: 76 SGEQEYRNNFESGVRHVNALLQDLRRLLSDNPRQAGLLGQTEDLVMQRLTLSRQLMELSQ 135 + + + ++S + V LQDL L+SD P Q + L+ +RL L + L + Sbjct: 74 TRNPSFLSPYQSAGKKVRGHLQDLEHLVSDRPSQEKRAMELGQLIDKRLFLLGNGVALGK 133 Query: 136 EEGRAR-------VLEGKELGERIRTGFEQMKGNENALLATRAHDTAMSANLTIFMVISG 188 +L GKE+ ++IR + MK +E L R+ + + +V G Sbjct: 134 SGISPHPDALLMVMLRGKEVMDQIRHQTQSMKSSEYRRLRRRSLLFYRTKKKVLPLVGGG 193 Query: 189 SLLSIALLLLVYRKLRKEMSRRVEAQQRAQAYSDEIEDLYNNAPCGYHSVDETDKRIIKI 248 S+ ++ L L +E+ RRV+A+Q+A+ Y++E+ +LY+ APCGYHSVD + ++I Sbjct: 194 LAASVLMISLSSLFLSREIDRRVQAEQKARKYAEEVRNLYDYAPCGYHSVDR-EGIFLRI 252 Query: 249 NDTELKWLGYTREQVVGRMTQADLLAPASAARYERELQPQFLLRRE-ISGIDLNFRRADG 307 N+TEL WLGY RE++ G+ +LL P Y+ Q +LR E + + L F R DG Sbjct: 253 NETELSWLGYRREELEGKKRIFELLFPEDLPLYQNAFQG--MLRGEPVRDLRLRFLRKDG 310 Query: 308 SEFTALVNATAIPSRDNSKLIS-RTVIYDISERKRAEEEIEALNADLERQAQHLHNVNKE 366 S L+N + + D+ K S R V+ D+++++ EE+I LN L + + L N E Sbjct: 311 SVLPVLLNVS-VNRDDSGKFFSTRGVLLDMTDKRIDEEKILDLNRTLSERNRQLEVTNGE 369 Query: 367 LESFSYSVSHDLRAPLRAISGYAMILEEDYAHAIDEKGREQLQVIRRNVRKMDALINDLL 426 LE FSYSVSHDLRAPLR+I G++ IL+EDYA +D +G + VIR N RKM LI+DLL Sbjct: 370 LEGFSYSVSHDLRAPLRSIDGFSRILQEDYAGKLDAEGERVIGVIRNNTRKMSNLIDDLL 429 Query: 427 KLAKSTTGELTLQRFSMDELVAQ-----VVAGLQQENPGVIFDVPRLEGAVANRGLIAQV 481 ++ + M+ L+ + V++G ++ GV + L A +R L+AQV Sbjct: 430 AFSRLGKKAFSWSLVDMEALIREDILPGVLSG-SEKGTGVDVTLSPLPRAWGDRTLLAQV 488 Query: 482 WENLLSNAVKFSSKSEQPRVCVTMQANADEYVYGVHDNGVGFDMRYAHKLFGTFQRLHRQ 541 W NLLSNAVKFS K E+P V V + +E VY V DNGVGFDM+Y KLF FQRLH Q Sbjct: 489 WTNLLSNAVKFSEKREKPSVRVEGRVETEEVVYTVRDNGVGFDMQYYDKLFKVFQRLHAQ 548 Query: 542 EEYAGTGIGLALVQRIVVRHTGRVWAESKPREGASFYFALPRKGVLP 588 E+ GTG+GLA+VQR++ RH GRVWAES+ EGA+F+F+LP + P Sbjct: 549 AEFPGTGVGLAIVQRVIARHGGRVWAESQSNEGAAFHFSLPVRDSPP 595 >ref|YP_001817834.1| multi-sensor signal transduction histidine kinase [Opitutus terrae PB90-1] gb|ACB74234.1| multi-sensor signal transduction histidine kinase [Opitutus terrae PB90-1] Length = 656 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 198/559 (35%), Positives = 306/559 (54%), Gaps = 21/559 (3%) Query: 39 FERRAVWLQHSYTVLNKLEEANSTLRDTVSSSRGFALSGEQEYRNNFESGVRHVNALLQD 98 F+ W+ H++ VL ++E+ + L S+ RGF LSG ++ + A ++ Sbjct: 95 FDDTFRWVDHTHAVLREVEQVLANLLIVQSAGRGFVLSGSEDVLAPLNQSRVELAAAMEQ 154 Query: 99 LRRLLSDNPRQAGLLGQTEDLVMQRLTLSRQLMELSQEEGRARVLEGKELG--------E 150 LR+L +DNP Q L + V +R+ + + +L Q A V+ G+ + Sbjct: 155 LRKLTADNPIQQERL-RALAPVTERVVQAME-EQLQQRRATATVIGGEAPVLLRTQADVD 212 Query: 151 RIRTGFEQMKGNENALLATRAHDTAMSANLTIFMVISGSLLSIALLLLVYRKLRKEMSRR 210 R R ++ E LLA R +A+ T+ ++ +++++ +L +R++ R Sbjct: 213 RAREIIRAIRFEEQRLLAERMRAAQRTAHGTVTASVAATVVALLFVLASVWLVRRDFGER 272 Query: 211 VEAQQRAQAYSDEIEDLYNNAPCGYHSVDETDKRIIKINDTELKWLGYTREQVVGRMTQA 270 V ++Q + + L++NAP VD+ RI++ N G+ R ++ GR Sbjct: 273 VRSEQALRQSQQMFKRLFDNAPDATVQVDQ-QGRIVRANRQIEALFGWERGELSGRRID- 330 Query: 271 DLLAPASAARYERELQPQFLLRREIS---GIDLNFRRADGSEFTALVNATAIPSRDNSKL 327 +LL P A+R+ L F+ R G++L RR DGSEF V+ P + Sbjct: 331 ELLPPRFASRHSAHLAAYFVAPRTRPMGVGLELFGRRRDGSEFP--VDIMLSPLETEQGM 388 Query: 328 ISRTVIYDISERKRAEEEIEALNADLERQAQHLHNVNKELESFSYSVSHDLRAPLRAISG 387 + VI D++ERKR +E+I LN DL+ Q L VN ELE+FSYSVSHDLRAPLR I G Sbjct: 389 QALAVIRDVTERKRIDEQIRRLNLDLQLQNARLELVNNELEAFSYSVSHDLRAPLRHIDG 448 Query: 388 YAMILEEDYAHAIDEKGREQLQVIRRNVRKMDALINDLLKLAKSTTGELTLQRFSMDELV 447 +A +L + A +DEKG+ + +I R+M LI+DLL ++ +L ++L+ Sbjct: 449 FASLLAKHAAGTLDEKGQRFITIISDAARRMGRLIDDLLTFSRMGRAQLETMTVDQNQLI 508 Query: 448 AQVVAGLQQENPGVI-FDVPRLEGAVANRGLIAQVWENLLSNAVKFSSKSEQPRVCVTMQ 506 V+ + + I + + L A+ ++ QVW NLL NAVK+S+++E PR+ V + Sbjct: 509 TDVIRDNELDRDQRIEWQLEPLPAVRADPAMLRQVWFNLLGNAVKYSARAEPPRIEVGWR 568 Query: 507 A---NADEYVYGVHDNGVGFDMRYAHKLFGTFQRLHRQEEYAGTGIGLALVQRIVVRHTG 563 + N+ V+ V DNGVGFDMRYA KLFG FQRLH + E+ GTGIGLA V+RI++RH G Sbjct: 569 SDPENSASQVFFVRDNGVGFDMRYAAKLFGVFQRLHAESEFEGTGIGLANVRRIIMRHGG 628 Query: 564 RVWAESKPREGASFYFALP 582 RVWAES P GA+F+F+LP Sbjct: 629 RVWAESTPGAGATFFFSLP 647 >ref|ZP_06485524.1| two-component system sensor protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 603 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 196/576 (34%), Positives = 296/576 (51%), Gaps = 52/576 (9%) Query: 37 RDFERRAVWLQHSYTVLNKLEEANSTLRDTVSSSRGFALSGEQEYRNNFESGVRHVN-AL 95 R+ + AVW+ HS V + + +RDT S++ + E+E R + A Sbjct: 38 RNANQAAVWVLHSQEVQETAQRLEAAMRDTESAALMRSHGVEREALRERMRRGRRESLAA 97 Query: 96 LQDLRRLLSDNPRQAGLLGQTEDLVMQRLTLSRQLMELSQEEGRARVLEGKELGERIRTG 155 +Q L L SDNP Q +G+ + + +RL L+ ++ + E ++ + IRT Sbjct: 98 VQRLIELTSDNPAQLVRIGRIQSTIERRLLLADRIAVTTAPEQIRALINDMTVNNPIRTL 157 Query: 156 FEQMKGNENALLATRAHDTAMSANLTIFMVISGSLLSIALLLL--VYRKLRKEMSRRVEA 213 + ++ E LLA R + + ++S + L++ LLLL V L++++ RR+ A Sbjct: 158 IDDLQSAEGRLLALR--NARAETERMHYALLSWATLAVQLLLLGTVTWLLQRQIRRRLAA 215 Query: 214 QQ-------RAQAYSDEIED------------LYNNAPCGYHSVDETDKRIIKINDTELK 254 +Q RA + + + L+N A + ++E + + D Sbjct: 216 EQEYLRANGRASSVLQTVREPIVLLDANQHIVLHNPAFAELYGLEERGNESMALEDVG-- 273 Query: 255 WLGYTREQVVGRMTQADLLAPASAARYERELQPQFLLRREISGIDLNFRRADGSEFTALV 314 + V R TQ + L L RE+ + R ADG T L+ Sbjct: 274 -------EGVWRDTQI-----------HQRLADVLLRGRELWDYEHEQRGADGVLRTMLI 315 Query: 315 NATAIPSRDNS-KLISRTVIYDISERKRAEEEIEALNADLERQAQHLHNVNKELESFSYS 373 NA +P D + + + + DIS +K A+ I+ LN +E + + + VN+ELE+FSYS Sbjct: 316 NARRMPLPDTTDEDVVLMTVSDISLQKSAQMRIQELNRQMEGKVEQVSEVNRELEAFSYS 375 Query: 374 VSHDLRAPLRAISGYAMILEEDYAHAIDEKGREQLQVIRRNVRKMDALINDLLKLAKSTT 433 VSHDLRAPLR ++G++ L A DEK R ++VI + R+M +LI+DLL ++ Sbjct: 376 VSHDLRAPLRHVAGFSDKLARHLGDAADEKSRHYMEVISSSARRMASLIDDLLVYSRLGR 435 Query: 434 GELTLQRFSMDELVAQ----VVAGLQQENPG--VIFDVPRLEGAVANRGLIAQVWENLLS 487 L LQ M LVA+ + A +Q EN G V + + L VA+ ++ Q+W NLL Sbjct: 436 SALRLQAVDMQSLVAETRAILDANVQSENTGHRVDWHIAPLPVLVADENMMRQLWMNLLG 495 Query: 488 NAVKFSSKSEQPRVCVTMQANADE-YVYGVHDNGVGFDMRYAHKLFGTFQRLHRQEEYAG 546 NAVK+S+K E +V VT AD + + V DNG GFDM Y+ KLFG FQRLH+ EYAG Sbjct: 496 NAVKYSAKREVAKVEVTYTPMADGGHQFSVRDNGAGFDMEYSGKLFGVFQRLHKASEYAG 555 Query: 547 TGIGLALVQRIVVRHTGRVWAESKPREGASFYFALP 582 TGIGLA V+R++ RH GRVWAE EGA+FYF LP Sbjct: 556 TGIGLASVRRVLTRHGGRVWAEGVVDEGATFYFVLP 591