BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4742.p         (162 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775980.1| signal peptide protein [Herbaspirillum serop...   145   3e-33
ref|YP_003775984.1| signal peptide protein [Herbaspirillum serop...   108   2e-22
ref|NP_107982.1| spore coat protein U precursor [Mesorhizobium l...   100   1e-19
ref|YP_001373289.1| spore coat U domain-containing protein [Ochr...    96   2e-18
ref|YP_004552187.1| Spore coat protein U [Sinorhizobium meliloti...    95   4e-18

>ref|YP_003775980.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64072.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
          Length = 159

 Score =  145 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 99/143 (69%), Positives = 114/143 (79%), Gaps = 5/143 (3%)

Query: 20  DALAVSSTGNLDISATVPSQCVVQSAALPFGSYAASALQQNAQIGVACSNGTSYTVSLDG 79
           +ALA + TGNL+ISA V  QC VQSAALPFG Y +SALQQNAQIGV CSNGTSYTV LD 
Sbjct: 22  NALAAAPTGNLEISAIVTQQCSVQSAALPFGVYGSSALQQNAQIGVTCSNGTSYTVGLDQ 81

Query: 80  GTGSGANVATRKLSTADGVNTLNYGLYQDAARTRSWGNSTGSDTVAGVGNGSNQNIPVYG 139
           G    AN   R++++ADG + ++YGLYQDAART +W  +TGS  VAGVG G+ QN PVYG
Sbjct: 82  GAAGSAN---RRMASADGASWIDYGLYQDAARTTAW--NTGSAAVAGVGTGNAQNFPVYG 136

Query: 140 YIPGGQSPRAGAYSDVVSITLSY 162
           Y+P GQSPRAGAYSDVVSITLSY
Sbjct: 137 YVPAGQSPRAGAYSDVVSITLSY 159


>ref|YP_003775984.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64076.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 71/154 (46%), Positives = 106/154 (68%), Gaps = 1/154 (0%)

Query: 9   LAAGLLSCVNLDALAVSSTGNLDISATVPSQCVVQSAALPFGSYAASALQQNAQIGVACS 68
           +AA  L+C    + A +++ +L ISA+V + C V  +++ FG+Y  + + Q   I V C+
Sbjct: 14  VAAATLTCAAPASFAATASASLTISASVVASCTVVGSSIAFGAYTQAVVNQTGSITVQCT 73

Query: 69  NGTSYTVSLDGGTGSGANVATRKLSTADGVNTLNYGLYQDAARTRSWGNSTGSDTVAGVG 128
           NGT+Y V LD GTG+GA V+ RK+S A G  TLNY LY+D+AR+ +WG++ G+DT+ G G
Sbjct: 74  NGTAYNVGLDAGTGTGATVSNRKMS-ASGGGTLNYALYRDSARSSNWGSTIGTDTLTGTG 132

Query: 129 NGSNQNIPVYGYIPGGQSPRAGAYSDVVSITLSY 162
           +G  Q + VYG IP  Q+P AG+YSD V++TL+Y
Sbjct: 133 SGLAQTLTVYGQIPAAQTPLAGSYSDTVTVTLTY 166


>ref|NP_107982.1| spore coat protein U precursor [Mesorhizobium loti MAFF303099]
 dbj|BAB54127.1| mll7726 [Mesorhizobium loti MAFF303099]
          Length = 165

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 62/145 (42%), Positives = 90/145 (62%), Gaps = 4/145 (2%)

Query: 21  ALAVSSTGNLDISATVPSQCVVQSAA-LPFGSYAA--SALQQNAQIGVACSNGTSYTVSL 77
           A   ++TGN+ +  T+ ++C VQ+A  + FG+     + + Q + I V C+N T Y V L
Sbjct: 22  AQGATATGNMTVRITIQAECKVQTATDMDFGTNGVIDANVDQTSTISVQCTNSTPYNVGL 81

Query: 78  DGGTGSGANVATRKLSTADGVNTLNYGLYQDAARTRSWGNSTGSDTVAGVGNGSNQNIPV 137
             G G+GA VA RK+ T      LNY LY+D AR + WG + G+DTVAG GNG+ Q + V
Sbjct: 82  SAGVGAGATVAVRKM-TGPAAAVLNYSLYRDVARAQLWGTTIGTDTVAGTGNGAAQPLTV 140

Query: 138 YGYIPGGQSPRAGAYSDVVSITLSY 162
           YG +P   +P AG Y+D V+IT++Y
Sbjct: 141 YGRVPPQTTPGAGVYTDTVAITVTY 165


>ref|YP_001373289.1| spore coat U domain-containing protein [Ochrobactrum anthropi ATCC
           49188]
 gb|ABS17460.1| Spore coat U domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 165

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/145 (44%), Positives = 95/145 (65%), Gaps = 4/145 (2%)

Query: 21  ALAVSSTGNLDISATVPSQC-VVQSAALPFGSYAA--SALQQNAQIGVACSNGTSYTVSL 77
            LA ++TGN+++  T+ ++C +V +  L FG+       + Q + I V C+NGT YTV L
Sbjct: 22  GLAATATGNMNVRITIQAECKIVTATDLDFGTKGVIDVNVDQTSTISVQCTNGTPYTVGL 81

Query: 78  DGGTGSGANVATRKLSTADGVNTLNYGLYQDAARTRSWGNSTGSDTVAGVGNGSNQNIPV 137
             G G+GA VA RK++ A    T+NY +Y+DAART+ WG + G+D V+G GNG+ Q+I  
Sbjct: 82  SAGGGAGATVAMRKMTGAASA-TINYTIYRDAARTQVWGVTAGTDVVSGTGNGNAQSITA 140

Query: 138 YGYIPGGQSPRAGAYSDVVSITLSY 162
           YG +P   +P  G YSDVVS+T++Y
Sbjct: 141 YGRVPAQTTPAPGVYSDVVSVTVTY 165


>ref|YP_004552187.1| Spore coat protein U [Sinorhizobium meliloti AK83]
 gb|AEG58263.1| Spore coat protein U [Sinorhizobium meliloti AK83]
          Length = 165

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 61/145 (42%), Positives = 94/145 (64%), Gaps = 4/145 (2%)

Query: 21  ALAVSSTGNLDISATVPSQCVVQSAA-LPFGSYAA--SALQQNAQIGVACSNGTSYTVSL 77
           A+  ++TGN+ +  T+ ++C +Q++  L FG+     + + Q + IGV C++G +Y V L
Sbjct: 22  AMGATATGNMTVRITIQAECKIQTSGDLDFGTRGVIDANVDQTSTIGVQCTSGQTYNVGL 81

Query: 78  DGGTGSGANVATRKLSTADGVNTLNYGLYQDAARTRSWGNSTGSDTVAGVGNGSNQNIPV 137
             G G+GA  + RK+ T     T+NY LY+D ART+ WG + G+DTVAG GNG  QN+ V
Sbjct: 82  SAGAGAGATTSIRKM-TGPAAATINYALYRDTARTQLWGVTIGTDTVAGTGNGDVQNLTV 140

Query: 138 YGYIPGGQSPRAGAYSDVVSITLSY 162
           YG +P   +P AG Y+D V+IT++Y
Sbjct: 141 YGRVPPQVTPAAGVYTDTVAITVTY 165