BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4741.p         (103 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775981.1| PilP assembly chaperone transmembrane protei...   163   8e-39

>ref|YP_003775981.1| PilP assembly chaperone transmembrane protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ64073.1| PilP assembly chaperone transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 248

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 85/103 (82%), Positives = 95/103 (92%)

Query: 1   MPVFIAPSAAPKAQLEYQLRAGKPLRLLVENSGNRRARLLDLALTLPNGKKLSAPGGGNP 60
           MPVFIA + APK QL+YQL AGKP RL+V+NSGNRRARLLDLALTLPNGKK++AP GGNP
Sbjct: 146 MPVFIAANTAPKLQLDYQLHAGKPARLMVQNSGNRRARLLDLALTLPNGKKINAPAGGNP 205

Query: 61  YTLAGITRQYLIESDTPLAVGSRVKLTANSDAGPIDAELTVAP 103
           YTLAG+TRQYLIE++TPLA GS+VKLTANSDAGPID ELTVAP
Sbjct: 206 YTLAGLTRQYLIETETPLAAGSKVKLTANSDAGPIDTELTVAP 248