BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4739.p (161 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775983.1| spore coat U domain-containing protein [Herb... 199 1e-49 ref|YP_003544153.1| putative secreted pili protein [Sphingobium ... 100 8e-20 ref|YP_003847357.1| Spore coat protein U [Gallionella capsiferri... 100 9e-20 ref|YP_002218478.1| Spore coat U domain-containing protein [Acid... 99 2e-19 ref|YP_004753067.1| hypothetical protein CFU_2417 [Collimonas fu... 96 2e-18 >ref|YP_003775983.1| spore coat U domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ64075.1| spore coat U domain protein [Herbaspirillum seropedicae SmR1] Length = 172 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 110/139 (79%), Positives = 128/139 (92%) Query: 23 PAQAQQLCSAASNPVSFGLYDPQSSSNLDNTGNITVTCQATASLLIAYTVKLSAGSSGAY 82 PA AQQ+CSA+S+PVSFGLYDPQSS+ +DN G+I+VTCQAT SLL+AYTVKLS+G+SGA Sbjct: 34 PAGAQQVCSASSSPVSFGLYDPQSSATIDNAGSISVTCQATVSLLMAYTVKLSSGNSGAL 93 Query: 83 AQRKMLSGANSLNYQAYRDAAHTSVWGDGSSSTSFVSDGYLLQVLTPVSRSYTVYGRVPG 142 +QRKMLSGANSLNYQ Y DAA +S+WGDGSS TSF++DGYLLQVLTPV + YTVYGRVPG Sbjct: 94 SQRKMLSGANSLNYQVYTDAARSSIWGDGSSGTSFITDGYLLQVLTPVVKHYTVYGRVPG 153 Query: 143 SQNVKAGSYMDTLTVLITY 161 SQNVKAGSY+DTLT+LITY Sbjct: 154 SQNVKAGSYLDTLTILITY 172 >ref|YP_003544153.1| putative secreted pili protein [Sphingobium japonicum UT26S] dbj|BAI95541.1| putative secreted pili protein [Sphingobium japonicum UT26S] Length = 161 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 58/132 (43%), Positives = 83/132 (62%), Gaps = 2/132 (1%) Query: 30 CSAASNPVSFGLYDPQSSSNLDNTGNITVTCQATASLLIAYTVKLSAGSSGAYAQRKMLS 89 C+ ++ VSFG Y+P SS+ D TG + V C +L ++TV LSAG SGA++QR++ Sbjct: 32 CTVTASGVSFGNYNPLSSTPSDVTGTVQVNCTLLLALAGSFTVDLSAGGSGAFSQRRLRR 91 Query: 90 GANSLNYQAYRDAAHTSVWGDGSSSTSFVSDGYLLQVLTPVSRSYTVYGRVPGSQNVKAG 149 G +SL Y Y DAA T +WGDG+ ++ V+ + L + + TVY R+P QNV AG Sbjct: 92 GTDSLAYNLYTDAARTQIWGDGTGGSTRVTRNF--AALLNFTDTMTVYARLPARQNVSAG 149 Query: 150 SYMDTLTVLITY 161 SY DT+ V +TY Sbjct: 150 SYSDTMIVTVTY 161 >ref|YP_003847357.1| Spore coat protein U [Gallionella capsiferriformans ES-2] gb|ADL55593.1| Spore coat protein U [Gallionella capsiferriformans ES-2] Length = 150 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 62/147 (42%), Positives = 89/147 (60%), Gaps = 1/147 (0%) Query: 15 LLIALAAGPAQAQQLCSAASNPVSFGLYDPQSSSNLDNTGNITVTCQATASLLIAYTVKL 74 L + LA A+ +C+ + V++G Y P S + LD GNI+V C A IAYT+ L Sbjct: 5 LSVLLACTSCGAEAVCNISVTNVAYGAYTPASYAPLDGMGNISVACDAAQGQAIAYTIVL 64 Query: 75 SAGSSGAYAQRKMLSGANSLNYQAYRDAAHTSVWGDGSSSTSFVSDGYLLQVLTPVSRSY 134 ++GSSGAY RKM +NY Y DAA T +WGDG++ + +SD Y V R+Y Sbjct: 65 NSGSSGAYGARKMGYVGYVINYNNYLDAARTKIWGDGNAGSHILSDSY-SGVGGLNVRNY 123 Query: 135 TVYGRVPGSQNVKAGSYMDTLTVLITY 161 TVYGR+ G+Q + AG+Y D++ V ++Y Sbjct: 124 TVYGRIFGNQAIPAGNYSDSIIVTLSY 150 >ref|YP_002218478.1| Spore coat U domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] ref|YP_002424523.1| spore coat protein [Acidithiobacillus ferrooxidans ATCC 23270] gb|ACH82271.1| Spore coat U domain protein [Acidithiobacillus ferrooxidans ATCC 53993] gb|ACK80033.1| spore coat protein [Acidithiobacillus ferrooxidans ATCC 23270] gb|EGQ61100.1| spore coat protein [Acidithiobacillus sp. GGI-221] Length = 154 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 65/143 (45%), Positives = 91/143 (63%), Gaps = 5/143 (3%) Query: 22 GPAQAQQLCSAASNPVSFGLYDPQSSSNLDNTGNITVTCQATASLLIAYTVKLSAG--SS 79 P CS + V+FG Y P ++SN +TG +TV+C AT LL +T+ L+AG S Sbjct: 14 APTAVDAACSVTATGVAFGTYVPSAASN--STGTVTVSCSATLGLLFNWTIALNAGVNSG 71 Query: 80 GAYAQRKMLSGANSLNYQAYRDAAHTSVWGDGSSSTSFVSDGYLLQVL-TPVSRSYTVYG 138 G+++ R+M SG + L+YQ Y D+ HT+VWGDG+S T+ VS L+ L P S S TVYG Sbjct: 72 GSFSNRRMASGNSYLSYQLYTDSGHTTVWGDGTSGTATVSGNCLISFLGIPCSGSATVYG 131 Query: 139 RVPGSQNVKAGSYMDTLTVLITY 161 ++P QN G+Y DT+TV +TY Sbjct: 132 QIPALQNPSPGAYTDTITVTVTY 154 >ref|YP_004753067.1| hypothetical protein CFU_2417 [Collimonas fungivorans Ter331] gb|AEK62244.1| hypothetical protein CFU_2417 [Collimonas fungivorans Ter331] Length = 162 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 65/138 (47%), Positives = 85/138 (61%), Gaps = 2/138 (1%) Query: 12 ALALLIALAAGPAQAQQLCSAASNPVSFGLYDPQSSSNLDNTGNITVTCQATASLLIAYT 71 A A ++AL C+ A+ + F Y S+N D+TG+I VTC A L +YT Sbjct: 15 AAAGVLALPLSAHALLATCTVATTGIVFPAYASPGSTNSDSTGDIAVTCSALVLGLGSYT 74 Query: 72 VKLSAGSSGAYAQRKMLSGANSLNYQAYRDAAHTSVWGDGSSSTSFVSDGYLLQVLTPVS 131 + +S G+ G YA RK+ SGAN LNY + DAA + VWGDG++ST VSD Y++ V P + Sbjct: 75 ISVSTGA-GTYANRKLTSGANFLNYNMFTDAARSIVWGDGTASTQTVSDSYVILV-APTT 132 Query: 132 RSYTVYGRVPGSQNVKAG 149 R YT YGRVPGSQN AG Sbjct: 133 RHYTSYGRVPGSQNKPAG 150