BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4737.p         (166 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775984.1| signal peptide protein [Herbaspirillum serop...   164   4e-39
ref|ZP_02062624.1| spore coat protein [Rickettsiella grylli] >gi...   110   1e-22
ref|YP_745148.1| protein U [Granulibacter bethesdensis CGDNIH1] ...    97   1e-18
ref|YP_004552187.1| Spore coat protein U [Sinorhizobium meliloti...    94   5e-18
ref|ZP_02907836.1| Spore coat U domain protein [Burkholderia amb...    94   1e-17

>ref|YP_003775984.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64076.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 143/166 (86%), Positives = 155/166 (93%)

Query: 1   MFFIKKNRIVAASIAAVVLASSAPASFAATASGTLTISASVVAACTVVGSAIAFGAYTQS 60
           MF  KKNR +AA +AA  L  +APASFAATAS +LTISASVVA+CTVVGS+IAFGAYTQ+
Sbjct: 1   MFVTKKNRFIAACVAAATLTCAAPASFAATASASLTISASVVASCTVVGSSIAFGAYTQA 60

Query: 61  VVNQSGTITVLCTNGTAYNVGLDAGTGTGASVSNRKMSAAGGGTLNYALYRDSARSNNWG 120
           VVNQ+G+ITV CTNGTAYNVGLDAGTGTGA+VSNRKMSA+GGGTLNYALYRDSARS+NWG
Sbjct: 61  VVNQTGSITVQCTNGTAYNVGLDAGTGTGATVSNRKMSASGGGTLNYALYRDSARSSNWG 120

Query: 121 STIGTDTLTGTGSGLTQTLTVYGQIPAAQTPLAGSYSDTVTVTLTY 166
           STIGTDTLTGTGSGL QTLTVYGQIPAAQTPLAGSYSDTVTVTLTY
Sbjct: 121 STIGTDTLTGTGSGLAQTLTVYGQIPAAQTPLAGSYSDTVTVTLTY 166


>ref|ZP_02062624.1| spore coat protein [Rickettsiella grylli]
 gb|EDP46629.1| spore coat protein [Rickettsiella grylli]
          Length = 161

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 79/151 (52%), Positives = 105/151 (69%), Gaps = 2/151 (1%)

Query: 17  VVLASSAPASFAATASGTLTISASVVAACTVVG-SAIAFGAYTQSVVNQSGTITVLCTNG 75
           +VL  S PA FA T +G L I+A+V AAC     +++ FG YT ++ N +G + V CTNG
Sbjct: 12  LVLLLSHPA-FAPTTTGNLPINATVNAACIFGNITSVNFGNYTGAINNATGGVEVNCTNG 70

Query: 76  TAYNVGLDAGTGTGASVSNRKMSAAGGGTLNYALYRDSARSNNWGSTIGTDTLTGTGSGL 135
           T YN+ L  GT  GA+V+ R+M+    G+L YAL+R+S R+ NWG TIGTDT+ GTG+G+
Sbjct: 71  TTYNISLGPGTFPGATVTTRQMTGTPTGSLAYALFRNSGRTQNWGQTIGTDTVAGTGTGV 130

Query: 136 TQTLTVYGQIPAAQTPLAGSYSDTVTVTLTY 166
            Q  TVYGQI A  TP AGSY+DTV +T+TY
Sbjct: 131 IQPYTVYGQIAAGLTPAAGSYNDTVVITITY 161


>ref|YP_745148.1| protein U [Granulibacter bethesdensis CGDNIH1]
 gb|ABI62225.1| protein U precursor [Granulibacter bethesdensis CGDNIH1]
          Length = 172

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 65/126 (51%), Positives = 87/126 (69%)

Query: 41  VVAACTVVGSAIAFGAYTQSVVNQSGTITVLCTNGTAYNVGLDAGTGTGASVSNRKMSAA 100
           V A+C +  + ++FG Y+ S  + + TI V CTN T YNVGL AGTG+GA+VSNRKMS  
Sbjct: 47  VQASCIIQATNLSFGNYSGSQTDATSTIQVTCTNSTPYNVGLSAGTGSGATVSNRKMSLN 106

Query: 101 GGGTLNYALYRDSARSNNWGSTIGTDTLTGTGSGLTQTLTVYGQIPAAQTPLAGSYSDTV 160
               L YALY D++RS NWG+T   DT++GTG+G  Q+LTVYG+I     P  GSY+DT+
Sbjct: 107 STSALPYALYSDASRSTNWGNTPNQDTVSGTGNGSAQSLTVYGRIQTGNYPTPGSYADTI 166

Query: 161 TVTLTY 166
           T T+ +
Sbjct: 167 TATVNF 172


>ref|YP_004552187.1| Spore coat protein U [Sinorhizobium meliloti AK83]
 gb|AEG58263.1| Spore coat protein U [Sinorhizobium meliloti AK83]
          Length = 165

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 74/159 (46%), Positives = 101/159 (63%), Gaps = 3/159 (1%)

Query: 11  AASIAAVVLASSAPASFAATASGTLTISASVVAACTVVGSA-IAFG--AYTQSVVNQSGT 67
             +I A  + +    +  ATA+G +T+  ++ A C +  S  + FG      + V+Q+ T
Sbjct: 7   GTAIVAAAMMTLLGPAMGATATGNMTVRITIQAECKIQTSGDLDFGTRGVIDANVDQTST 66

Query: 68  ITVLCTNGTAYNVGLDAGTGTGASVSNRKMSAAGGGTLNYALYRDSARSNNWGSTIGTDT 127
           I V CT+G  YNVGL AG G GA+ S RKM+     T+NYALYRD+AR+  WG TIGTDT
Sbjct: 67  IGVQCTSGQTYNVGLSAGAGAGATTSIRKMTGPAAATINYALYRDTARTQLWGVTIGTDT 126

Query: 128 LTGTGSGLTQTLTVYGQIPAAQTPLAGSYSDTVTVTLTY 166
           + GTG+G  Q LTVYG++P   TP AG Y+DTV +T+TY
Sbjct: 127 VAGTGNGDVQNLTVYGRVPPQVTPAAGVYTDTVAITVTY 165


>ref|ZP_02907836.1| Spore coat U domain protein [Burkholderia ambifaria MEX-5]
 gb|EDT41025.1| Spore coat U domain protein [Burkholderia ambifaria MEX-5]
          Length = 193

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 62/124 (50%), Positives = 88/124 (70%), Gaps = 1/124 (0%)

Query: 43  AACTVVGSAIAFGAYTQSVVNQSGTITVLCTNGTAYNVGLDAGTGTGASVSNRKMSAAGG 102
           A C +  + +AFGAY  +  + + T++V C+N T YNVGLDAG  TGA+V++R MS    
Sbjct: 71  ATCQITATPLAFGAYAGTQTDATATLSVTCSNTTPYNVGLDAGLATGATVTSRAMSITDA 130

Query: 103 GTLNYALYRDSARSNNWGSTIGTDTLTGTGSGLTQTLTVYGQIPAAQTPLAGSYSDTVTV 162
             L YAL++D+ R+ NWG+T+GTDT+ GTG+G  QTLTVYG++ A Q    G+Y+DT+T 
Sbjct: 131 SLL-YALFQDAGRTTNWGNTVGTDTVAGTGTGSAQTLTVYGRVAAGQFVTPGAYTDTITA 189

Query: 163 TLTY 166
           T+TY
Sbjct: 190 TVTY 193