BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4734.p         (91 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001353224.1| DNA-binding protein HU-beta ( histone-like D...   106   1e-21
ref|YP_001100030.1| DNA-binding protein HU-beta [Herminiimonas a...   106   1e-21
ref|YP_004415772.1| DNA-binding protein Hu-beta [Pusillimonas sp...   104   4e-21
ref|ZP_06840664.1| histone family protein DNA-binding protein [B...   103   8e-21
ref|YP_004619563.1| DNA-binding protein HU-beta [Ramlibacter tat...   103   1e-20

>ref|YP_001353224.1| DNA-binding protein HU-beta ( histone-like DNA-binding protein)
          [Janthinobacterium sp. Marseille]
 gb|ABR91730.1| DNA-binding protein Hu-beta (bacterial histone-like DNA-binding
          protein) [Janthinobacterium sp. Marseille]
          Length = 90

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 73/89 (82%), Positives = 82/89 (92%)

Query: 2  VNKGELIEHIAGEADISKAAAGRAVDAFIGAVKTTLKKNGTVTLVGFGTFAVGKRAARAG 61
          +NK ELI+HIAG ADISKAAA RA+D+ IGAVKTTLKKNG+VTLVGFGTF+VGKRAAR G
Sbjct: 1  MNKTELIDHIAGSADISKAAAARALDSVIGAVKTTLKKNGSVTLVGFGTFSVGKRAARTG 60

Query: 62 RNPQTGAAIKIKASKVPKFKAGKALKDAI 90
          RNP+TG AIKIKA+KVPKFK GKALKDA+
Sbjct: 61 RNPRTGEAIKIKAAKVPKFKPGKALKDAV 89


>ref|YP_001100030.1| DNA-binding protein HU-beta [Herminiimonas arsenicoxydans]
 emb|CAL61905.1| DNA-binding protein HU-beta (NS1) (HU-1) [Herminiimonas
          arsenicoxydans]
          Length = 90

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 74/89 (83%), Positives = 81/89 (91%)

Query: 2  VNKGELIEHIAGEADISKAAAGRAVDAFIGAVKTTLKKNGTVTLVGFGTFAVGKRAARAG 61
          +NK ELI+HIAG ADISKAAA RA+DA I AVKTTLKKNGTVTLVGFGTF+VGKRAAR G
Sbjct: 1  MNKTELIDHIAGSADISKAAATRALDAVIVAVKTTLKKNGTVTLVGFGTFSVGKRAARTG 60

Query: 62 RNPQTGAAIKIKASKVPKFKAGKALKDAI 90
          RNP+TG AIKIKA+KVPKFK GKALKDA+
Sbjct: 61 RNPRTGEAIKIKAAKVPKFKPGKALKDAV 89


>ref|YP_004415772.1| DNA-binding protein Hu-beta [Pusillimonas sp. T7-7]
 gb|AEC19148.1| DNA-binding protein Hu-beta [Pusillimonas sp. T7-7]
          Length = 90

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 69/89 (77%), Positives = 80/89 (89%)

Query: 2  VNKGELIEHIAGEADISKAAAGRAVDAFIGAVKTTLKKNGTVTLVGFGTFAVGKRAARAG 61
          +NK ELIEHI+ +AD+SKA AGRA++AFIGAVKTTLKK GTVTLVGFGTFAV +RAAR G
Sbjct: 1  MNKTELIEHISTKADLSKADAGRALEAFIGAVKTTLKKKGTVTLVGFGTFAVSERAARTG 60

Query: 62 RNPQTGAAIKIKASKVPKFKAGKALKDAI 90
          RNP+TG AIKIK +KVPKF+ GKALKDA+
Sbjct: 61 RNPRTGEAIKIKKAKVPKFRPGKALKDAV 89


>ref|ZP_06840664.1| histone family protein DNA-binding protein [Burkholderia sp.
          Ch1-1]
 gb|EFG71860.1| histone family protein DNA-binding protein [Burkholderia sp.
          Ch1-1]
          Length = 90

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 70/89 (78%), Positives = 80/89 (89%)

Query: 2  VNKGELIEHIAGEADISKAAAGRAVDAFIGAVKTTLKKNGTVTLVGFGTFAVGKRAARAG 61
          +NK ELI+HIA +ADISKAAAGRA+DA IG VK TLK+ G+VTLVGFGTFAVGKR AR G
Sbjct: 1  MNKTELIDHIAQQADISKAAAGRALDAVIGGVKGTLKQGGSVTLVGFGTFAVGKRTARTG 60

Query: 62 RNPQTGAAIKIKASKVPKFKAGKALKDAI 90
          RNP+TGAAIKIKA+KVPKF+ GKALKDA+
Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALKDAL 89


>ref|YP_004619563.1| DNA-binding protein HU-beta [Ramlibacter tataouinensis TTB310]
 gb|AEG93544.1| Candidate DNA-binding protein HU-beta [Ramlibacter tataouinensis
          TTB310]
          Length = 90

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 70/89 (78%), Positives = 81/89 (91%)

Query: 2  VNKGELIEHIAGEADISKAAAGRAVDAFIGAVKTTLKKNGTVTLVGFGTFAVGKRAARAG 61
          +NK ELIEHIA  ADISKAAA RA+++ IGAVKTTLKK G+V+LVGFGTFAVGKRAAR+G
Sbjct: 1  MNKTELIEHIAKHADISKAAATRALESMIGAVKTTLKKGGSVSLVGFGTFAVGKRAARSG 60

Query: 62 RNPQTGAAIKIKASKVPKFKAGKALKDAI 90
          RNP+TGA IKIKA+KVPKF+ GKALKDA+
Sbjct: 61 RNPRTGAQIKIKAAKVPKFRPGKALKDAL 89