BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4730.p (208 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775987.1| ATP-dependent Clp protease proteolytic subun... 384 e-105 ref|YP_004753091.1| ATP-dependent Clp protease proteolytic subun... 360 8e-98 ref|YP_001100033.1| ATP-dependent Clp protease proteolytic subun... 355 2e-96 ref|YP_001353221.1| protease subunit of ATP-dependent Clp protea... 354 4e-96 ref|ZP_08274873.1| ATP-dependent Clp protease proteolytic subuni... 340 5e-92 >ref|YP_003775987.1| ATP-dependent Clp protease proteolytic subunit [Herbaspirillum seropedicae SmR1] emb|CAM32551.1| ATP-dependent Clp protease (proteolytic subunit) protein [Herbaspirillum seropedicae] gb|ADJ64079.1| ATP-dependent Clp protease (proteolytic subunit) protein [Herbaspirillum seropedicae SmR1] Length = 208 Score = 384 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 203/208 (97%), Positives = 207/208 (99%) Query: 1 MTGLMKQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVA 60 MTGLMKQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVA Sbjct: 1 MTGLMKQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVA 60 Query: 61 QLLFLESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAA 120 QLLFLESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAA Sbjct: 61 QLLFLESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAA 120 Query: 121 GAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRSVEQIS 180 GAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGR+VEQIS Sbjct: 121 GAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQIS 180 Query: 181 KDTDRDNFMSAEAAAEYGLIDQVLTQRA 208 KDTDRDNFMSA+AAAEYGLID+VLT+R Sbjct: 181 KDTDRDNFMSADAAAEYGLIDKVLTERG 208 >ref|YP_004753091.1| ATP-dependent Clp protease proteolytic subunit [Collimonas fungivorans Ter331] gb|AEK62268.1| ATP-dependent Clp protease proteolytic subunit [Collimonas fungivorans Ter331] Length = 208 Score = 360 bits (924), Expect = 8e-98, Method: Composition-based stats. Identities = 184/208 (88%), Positives = 198/208 (95%) Query: 1 MTGLMKQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVA 60 MTG + SALDT MLGMVP+VIEQSGRGER+YDIYSRLL+ERIIFLVGPVND ANL+VA Sbjct: 1 MTGFNRNSALDTDMLGMVPIVIEQSGRGERSYDIYSRLLRERIIFLVGPVNDQTANLVVA 60 Query: 61 QLLFLESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAA 120 QLLFLESENPDKDISLYINSPGGSVSAGMAI+DTMQF+KP++STLCTG+AASMGAFLLAA Sbjct: 61 QLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPEISTLCTGMAASMGAFLLAA 120 Query: 121 GAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRSVEQIS 180 GAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLN ILA+KTGRS+EQIS Sbjct: 121 GAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNGILADKTGRSIEQIS 180 Query: 181 KDTDRDNFMSAEAAAEYGLIDQVLTQRA 208 KDTDRDNFMSA+AA EYGLID+VL RA Sbjct: 181 KDTDRDNFMSADAAVEYGLIDKVLATRA 208 >ref|YP_001100033.1| ATP-dependent Clp protease proteolytic subunit [Herminiimonas arsenicoxydans] emb|CAL61908.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) [Herminiimonas arsenicoxydans] Length = 209 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 183/207 (88%), Positives = 196/207 (94%) Query: 2 TGLMKQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQ 61 T + + SALDT MLGMVPMVIEQSGRGERAYDIYSRLLKER+IFLVGPVND ANLIVAQ Sbjct: 3 TSMTRTSALDTDMLGMVPMVIEQSGRGERAYDIYSRLLKERVIFLVGPVNDHAANLIVAQ 62 Query: 62 LLFLESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAG 121 LLFLESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKP VSTLCTGLAASMGAFLLAAG Sbjct: 63 LLFLESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPNVSTLCTGLAASMGAFLLAAG 122 Query: 122 AKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRSVEQISK 181 KGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLN ILA++TG+++E+IS+ Sbjct: 123 EKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNQILADRTGKTLEEISR 182 Query: 182 DTDRDNFMSAEAAAEYGLIDQVLTQRA 208 DTDRDNFMSA+AA EYG+ID+VLT RA Sbjct: 183 DTDRDNFMSADAAVEYGMIDKVLTTRA 209 >ref|YP_001353221.1| protease subunit of ATP-dependent Clp proteases [Janthinobacterium sp. Marseille] sp|A6SY74|CLPP_JANMA RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gb|ABR89176.1| protease subunit of ATP-dependent Clp proteases [Janthinobacterium sp. Marseille] Length = 210 Score = 354 bits (909), Expect = 4e-96, Method: Composition-based stats. Identities = 185/207 (89%), Positives = 195/207 (94%) Query: 2 TGLMKQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQ 61 T + + SALDT MLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVND MANLIVAQ Sbjct: 4 TSMTRTSALDTDMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDQMANLIVAQ 63 Query: 62 LLFLESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAG 121 LLFLESENPDKDISLYINSPGGSVSAGMAI+DTMQFIKP VSTLCTGLAASMGAFLLAAG Sbjct: 64 LLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPNVSTLCTGLAASMGAFLLAAG 123 Query: 122 AKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRSVEQISK 181 KGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLN ILAE+TG+SVE+I+K Sbjct: 124 EKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNAILAERTGKSVEEIAK 183 Query: 182 DTDRDNFMSAEAAAEYGLIDQVLTQRA 208 DTDRDNFMSA+AA YG+ID+VL RA Sbjct: 184 DTDRDNFMSADAAVTYGMIDKVLATRA 210 >ref|ZP_08274873.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF31661.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacteraceae bacterium IMCC9480] Length = 206 Score = 340 bits (873), Expect = 5e-92, Method: Composition-based stats. Identities = 172/204 (84%), Positives = 192/204 (94%) Query: 4 LMKQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLL 63 + + A++ QMLGM+PMVIEQSGRGER+YDIYSRLLKER+IFLVGPVND +ANLIVAQLL Sbjct: 2 MTRNFAMEPQMLGMIPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDGVANLIVAQLL 61 Query: 64 FLESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAK 123 FLESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKP VSTLCTGLAASMGAFLLAAGAK Sbjct: 62 FLESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPNVSTLCTGLAASMGAFLLAAGAK 121 Query: 124 GKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRSVEQISKDT 183 GKRFSLPNSRIMIHQP GGAQGQA+DIEIQA+EILYLRERLN ILA+KTGR++E+I +DT Sbjct: 122 GKRFSLPNSRIMIHQPSGGAQGQATDIEIQAKEILYLRERLNGILADKTGRTIEEIRRDT 181 Query: 184 DRDNFMSAEAAAEYGLIDQVLTQR 207 +RDNFMSA+ A +YG+ID+VLT R Sbjct: 182 ERDNFMSADEAEKYGMIDKVLTTR 205