BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4728.p         (165 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775989.1| catabolite repression CreA protein [Herbaspi...   277   5e-73
ref|YP_004753093.1| hypothetical protein CFU_2443 [Collimonas fu...   225   2e-57
ref|YP_412405.1| CreA [Nitrosospira multiformis ATCC 25196] >gi|...   221   3e-56
ref|YP_001351764.1| CreA protein [Janthinobacterium sp. Marseill...   218   4e-55
ref|YP_001098433.1| hypothetical protein HEAR0068 [Herminiimonas...   212   1e-53

>ref|YP_003775989.1| catabolite repression CreA protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ64081.1| catabolite repression CreA protein [Herbaspirillum seropedicae
           SmR1]
          Length = 165

 Score =  277 bits (708), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 148/165 (89%), Positives = 155/165 (93%)

Query: 1   MKHQARALAGAIFSVFALAAAIPHVASAEELADVSTAFRWLGKNDRVVIEAYDDPKVQGV 60
           MK QARAL GAI S  +LAA +P  ASAEELADVSTAFRWLGKNDRVVIEAYDDPKV GV
Sbjct: 1   MKPQARALVGAILSAVSLAALLPQSASAEELADVSTAFRWLGKNDRVVIEAYDDPKVVGV 60

Query: 61  TCYVSRARTGGVKGTVGLAEDKSEASIACRQVAPTLQFQDKLPVQEDVFSERMSILFKRL 120
           TCYVSRARTGGVKGTVGLAEDKSEASIACRQVAP+LQF+DKLPVQEDVFSERMSILFKRL
Sbjct: 61  TCYVSRARTGGVKGTVGLAEDKSEASIACRQVAPSLQFKDKLPVQEDVFSERMSILFKRL 120

Query: 121 HVVRVVDTKRNTLVYLTYSDKLIDGSPMNAVTAVPVAPSTPIPVK 165
           HVVRVVD +RNTLVYLTYSDKLIDGSPMNAVTAVPV+P+TPIPVK
Sbjct: 121 HVVRVVDARRNTLVYLTYSDKLIDGSPMNAVTAVPVSPATPIPVK 165


>ref|YP_004753093.1| hypothetical protein CFU_2443 [Collimonas fungivorans Ter331]
 gb|AEK62270.1| Conserved uncharacterized protein [Collimonas fungivorans Ter331]
          Length = 165

 Score =  225 bits (573), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 109/138 (78%), Positives = 128/138 (92%), Gaps = 1/138 (0%)

Query: 28  AEELADVSTAFRWLGKNDRVVIEAYDDPKVQGVTCYVSRARTGGVKGTVGLAEDKSEASI 87
           +E++ +VSTAFRW+G+NDRVV+EAYDDPKVQGVTCYVSRARTGGVKGTVGLAED++EASI
Sbjct: 29  SEQVGEVSTAFRWVGRNDRVVVEAYDDPKVQGVTCYVSRARTGGVKGTVGLAEDRAEASI 88

Query: 88  ACRQVAPTLQFQDKLPVQEDVFSERMSILFKRLHVVRVVDTKRNTLVYLTYSDKLIDGSP 147
           ACRQV   +QF  KLP+QEDVF+ERMS+LFKRLH+VR+VD KRNTLVYLTYSDKL+DGSP
Sbjct: 89  ACRQVG-AVQFSAKLPLQEDVFTERMSVLFKRLHIVRLVDPKRNTLVYLTYSDKLVDGSP 147

Query: 148 MNAVTAVPVAPSTPIPVK 165
            N+VTAVPV P +PIP+K
Sbjct: 148 QNSVTAVPVPPGSPIPLK 165


>ref|YP_412405.1| CreA [Nitrosospira multiformis ATCC 25196]
 gb|ABB75013.1| CreA [Nitrosospira multiformis ATCC 25196]
          Length = 163

 Score =  221 bits (563), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 108/148 (72%), Positives = 128/148 (86%)

Query: 18  LAAAIPHVASAEELADVSTAFRWLGKNDRVVIEAYDDPKVQGVTCYVSRARTGGVKGTVG 77
            + A   VA AE + +V TAFRWLGK+DRVVIEAYDDPKV+GVTCYVSRARTGG+KGTVG
Sbjct: 16  FSTAFCGVAKAELVGEVDTAFRWLGKDDRVVIEAYDDPKVRGVTCYVSRARTGGIKGTVG 75

Query: 78  LAEDKSEASIACRQVAPTLQFQDKLPVQEDVFSERMSILFKRLHVVRVVDTKRNTLVYLT 137
           LAED++EASIACRQV+  ++F  KLP QEDVF+ERMSILFKRLHVVRVVD+ RN L+YLT
Sbjct: 76  LAEDRAEASIACRQVSDPIEFHGKLPRQEDVFTERMSILFKRLHVVRVVDSARNVLIYLT 135

Query: 138 YSDKLIDGSPMNAVTAVPVAPSTPIPVK 165
           YSD++I+GSP N+VTAVPV  + PIP+K
Sbjct: 136 YSDRIIEGSPQNSVTAVPVGRNNPIPMK 163


>ref|YP_001351764.1| CreA protein [Janthinobacterium sp. Marseille]
 gb|ABR89937.1| CreA protein [Janthinobacterium sp. Marseille]
          Length = 159

 Score =  218 bits (554), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 114/158 (72%), Positives = 129/158 (81%), Gaps = 3/158 (1%)

Query: 8   LAGAIFSVFALAAAIPHVASAEELADVSTAFRWLGKNDRVVIEAYDDPKVQGVTCYVSRA 67
           LAG I +    AA   H   A+++ +VSTAFR+LGKNDR+VIEAYDDPKV GV+C+VSRA
Sbjct: 5   LAGIILAGSTCAALPLH---AQQIGEVSTAFRFLGKNDRIVIEAYDDPKVLGVSCFVSRA 61

Query: 68  RTGGVKGTVGLAEDKSEASIACRQVAPTLQFQDKLPVQEDVFSERMSILFKRLHVVRVVD 127
           RTGGV GTVGLAED ++ASIACRQV   L F++KLP QEDVFSER SILFKRLH+VR+VD
Sbjct: 62  RTGGVSGTVGLAEDTADASIACRQVGDVLSFKEKLPKQEDVFSERQSILFKRLHIVRIVD 121

Query: 128 TKRNTLVYLTYSDKLIDGSPMNAVTAVPVAPSTPIPVK 165
             RNTLVYLTYSDKLIDGSP N VTAVPV  S PIPVK
Sbjct: 122 PVRNTLVYLTYSDKLIDGSPKNGVTAVPVPRSNPIPVK 159


>ref|YP_001098433.1| hypothetical protein HEAR0068 [Herminiimonas arsenicoxydans]
 emb|CAL60304.1| conserved hypothetical protein CreA family; putative exported
           protein [Herminiimonas arsenicoxydans]
          Length = 162

 Score =  212 bits (540), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 109/160 (68%), Positives = 130/160 (81%), Gaps = 1/160 (0%)

Query: 6   RALAGAIFSVFALAAAIPHVASAEELADVSTAFRWLGKNDRVVIEAYDDPKVQGVTCYVS 65
           R L+  + +  ALA  +  +  AEE+ +VST FR+LGKNDR+VIEAYDDPKV GV+CYVS
Sbjct: 3   RNLSAIMLTAIALALPVLPL-QAEEIGEVSTVFRFLGKNDRIVIEAYDDPKVAGVSCYVS 61

Query: 66  RARTGGVKGTVGLAEDKSEASIACRQVAPTLQFQDKLPVQEDVFSERMSILFKRLHVVRV 125
           RARTGG+ GTVGLAED ++ASIACRQ+  TL+F  KLP QE+VFSER SI+FKRLHVVRV
Sbjct: 62  RARTGGISGTVGLAEDTADASIACRQIGDTLRFTGKLPQQEEVFSERQSIVFKRLHVVRV 121

Query: 126 VDTKRNTLVYLTYSDKLIDGSPMNAVTAVPVAPSTPIPVK 165
           VD  RNTLVY+TYSD+LI+GSP N VTAVPV  S PIP+K
Sbjct: 122 VDPLRNTLVYMTYSDRLIEGSPKNGVTAVPVPRSNPIPLK 161