BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4727.p         (110 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775990.1| hypothetical protein Hsero_2585 [Herbaspiril...   122   2e-26
ref|ZP_08273223.1| hypothetical protein IMCC9480_725 [Oxalobacte...    87   1e-15
ref|YP_554233.1| hypothetical protein Bxe_B1072 [Burkholderia xe...    84   5e-15
ref|ZP_06839548.1| protein of unknown function DUF1653 [Burkhold...    84   8e-15
ref|YP_001889379.1| hypothetical protein Bphyt_5662 [Burkholderi...    83   1e-14

>ref|YP_003775990.1| hypothetical protein Hsero_2585 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64082.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 64

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/64 (87%), Positives = 61/64 (95%)

Query: 47  MTRYRHYKGGIYEYIDEAILEADLTPMIIYRAADGRLWLRPRDVFFEMVEVDGRQTPRFE 106
           MT YRHYKGGIYEY+DEAILEADLTPMI+YRAADGRLWLRPR+ FFEMVEVDG+Q PRF+
Sbjct: 1   MTLYRHYKGGIYEYVDEAILEADLTPMIVYRAADGRLWLRPREAFFEMVEVDGKQVPRFQ 60

Query: 107 KIED 110
           KIED
Sbjct: 61  KIED 64


>ref|ZP_08273223.1| hypothetical protein IMCC9480_725 [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33307.1| hypothetical protein IMCC9480_725 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 62

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 47/60 (78%)

Query: 50  YRHYKGGIYEYIDEAILEADLTPMIIYRAADGRLWLRPRDVFFEMVEVDGRQTPRFEKIE 109
           YRHYKGGIYE +  A LE+DLTP+I+YRA DG LW+RP  VF E+VEVDG   PRF +IE
Sbjct: 3   YRHYKGGIYELVGPATLESDLTPLIVYRAPDGSLWVRPAAVFHELVEVDGVWLPRFSQIE 62


>ref|YP_554233.1| hypothetical protein Bxe_B1072 [Burkholderia xenovorans LB400]
 gb|ABE34883.1| conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 72

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/63 (63%), Positives = 47/63 (74%), Gaps = 1/63 (1%)

Query: 47  MTRYRHYKGGIYEYIDEAILEADLT-PMIIYRAADGRLWLRPRDVFFEMVEVDGRQTPRF 105
           M RYRHYKGGIYE + EA LE+D T  MI+Y+AA+G +W RP  VFFE+VEVDG   PRF
Sbjct: 1   MVRYRHYKGGIYELVCEATLESDPTVTMIVYKAANGTIWTRPASVFFELVEVDGATVPRF 60

Query: 106 EKI 108
             I
Sbjct: 61  API 63


>ref|ZP_06839548.1| protein of unknown function DUF1653 [Burkholderia sp. Ch1-1]
 gb|EFG73089.1| protein of unknown function DUF1653 [Burkholderia sp. Ch1-1]
          Length = 72

 Score = 84.0 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/63 (60%), Positives = 47/63 (74%), Gaps = 1/63 (1%)

Query: 47  MTRYRHYKGGIYEYIDEAILEADLT-PMIIYRAADGRLWLRPRDVFFEMVEVDGRQTPRF 105
           M RYRHYKGGIYE + EA LE+D T  MI+Y+A +G +W RP  VFFE++EVDG + PRF
Sbjct: 1   MVRYRHYKGGIYELVCEATLESDPTVTMIVYKAGNGTIWTRPASVFFELIEVDGAKVPRF 60

Query: 106 EKI 108
             I
Sbjct: 61  API 63


>ref|YP_001889379.1| hypothetical protein Bphyt_5662 [Burkholderia phytofirmans PsJN]
 gb|ACD20009.1| protein of unknown function DUF1653 [Burkholderia phytofirmans
           PsJN]
          Length = 64

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/64 (60%), Positives = 48/64 (75%), Gaps = 1/64 (1%)

Query: 47  MTRYRHYKGGIYEYIDEAILEAD-LTPMIIYRAADGRLWLRPRDVFFEMVEVDGRQTPRF 105
           M RYRHYKGGIYE + EA LE+D    MI+Y+AA+G +W RP  VFFEMV+VDG + PRF
Sbjct: 1   MVRYRHYKGGIYELVCEATLESDPKVTMIVYKAANGTIWTRPASVFFEMVDVDGAKVPRF 60

Query: 106 EKIE 109
             I+
Sbjct: 61  APID 64