BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4725.p         (367 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001631058.1| hypothetical protein Bpet2448 [Bordetella pe...   189   9e-46
ref|ZP_02360372.1| hcp protein [Burkholderia oklahomensis EO147]...   186   4e-45
ref|YP_439065.1| hcp protein [Burkholderia thailandensis E264] >...   184   2e-44
ref|ZP_02466808.1| hcp protein [Burkholderia thailandensis MSMB43]    170   4e-40
gb|EES52238.1| protein of unknown function DUF796 [Leptospirillu...   162   9e-38

>ref|YP_001631058.1| hypothetical protein Bpet2448 [Bordetella petrii DSM 12804]
 emb|CAP42790.1| conserved hypothetical protein [Bordetella petrii]
          Length = 161

 Score =  189 bits (479), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 92/129 (71%), Positives = 105/129 (81%), Gaps = 2/129 (1%)

Query: 91  MPMPCYLILEGQNQGKIEGSTKVKGHEGKILVQAVDHTIEIPKSPQTGLPTGKRVHLPMT 150
           M MPCYL LEGQNQGKIEGS +V GHEGKILVQAVDH+IE+PK+PQTGLP+GKR HL +T
Sbjct: 1   MAMPCYLTLEGQNQGKIEGSCEVSGHEGKILVQAVDHSIELPKNPQTGLPSGKRQHLGIT 60

Query: 151 LTKEIDKSSPKLFQALTSGEQMKDVTLEYYRISPKGTEEKYYTVKLSNAILTKTVSRQKT 210
           L KEIDKSSPKL+QAL SGEQ+K V LE+YRISPKGTEEKYYT+KL  A++  T      
Sbjct: 61  LVKEIDKSSPKLYQALCSGEQLKSVVLEFYRISPKGTEEKYYTIKLEKAVIVAT--HLWV 118

Query: 211 PGSLRSRNR 219
           P  L+  NR
Sbjct: 119 PNCLQPDNR 127


>ref|ZP_02360372.1| hcp protein [Burkholderia oklahomensis EO147]
 ref|ZP_02366146.1| hcp protein [Burkholderia oklahomensis C6786]
          Length = 162

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 95/129 (73%), Positives = 103/129 (79%), Gaps = 2/129 (1%)

Query: 91  MPMPCYLILEGQNQGKIEGSTKVKGHEGKILVQAVDHTIEIPKSPQTGLPTGKRVHLPMT 150
           MPMPC+L LEGQ QG IEGS  ++GHEGKILVQAV+HTIEIPKSPQTGLPTGKR+H PMT
Sbjct: 1   MPMPCFLALEGQTQGNIEGSVDIQGHEGKILVQAVEHTIEIPKSPQTGLPTGKRIHGPMT 60

Query: 151 LTKEIDKSSPKLFQALTSGEQMKDVTLEYYRISPKGTEEKYYTVKLSNAILTKTVSRQKT 210
           LTKEIDKSSPKL QAL SGEQMK V LE+YRI  +G EE YYTVKL NAILT    R  T
Sbjct: 61  LTKEIDKSSPKLSQALASGEQMKSVVLEFYRILKEGKEEHYYTVKLENAILTSI--RSWT 118

Query: 211 PGSLRSRNR 219
           P  L   N+
Sbjct: 119 PNCLVLDNK 127


>ref|YP_439065.1| hcp protein [Burkholderia thailandensis E264]
 ref|ZP_02370359.1| hcp protein [Burkholderia thailandensis TXDOH]
 ref|ZP_02384268.1| hcp protein [Burkholderia thailandensis Bt4]
 ref|ZP_05590435.1| hcp protein [Burkholderia thailandensis E264]
 gb|ABC34439.1| hcp protein [Burkholderia thailandensis E264]
          Length = 162

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 95/129 (73%), Positives = 102/129 (79%), Gaps = 2/129 (1%)

Query: 91  MPMPCYLILEGQNQGKIEGSTKVKGHEGKILVQAVDHTIEIPKSPQTGLPTGKRVHLPMT 150
           MPMPCYL LEGQ QG IEGS  ++GHEGKILVQAV+HTIEIPKSPQTGLPT KR+H PMT
Sbjct: 1   MPMPCYLTLEGQTQGSIEGSCDIQGHEGKILVQAVEHTIEIPKSPQTGLPTSKRLHGPMT 60

Query: 151 LTKEIDKSSPKLFQALTSGEQMKDVTLEYYRISPKGTEEKYYTVKLSNAILTKTVSRQKT 210
           LTKEIDKSSPKL QAL SGEQMK V LE+YRI  +G EE YYTVKL NAILT    R  T
Sbjct: 61  LTKEIDKSSPKLSQALASGEQMKSVVLEFYRILKEGKEEHYYTVKLENAILTSI--RSWT 118

Query: 211 PGSLRSRNR 219
           P  L   N+
Sbjct: 119 PNCLVLDNK 127


>ref|ZP_02466808.1| hcp protein [Burkholderia thailandensis MSMB43]
          Length = 162

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 86/129 (66%), Positives = 96/129 (74%), Gaps = 2/129 (1%)

Query: 91  MPMPCYLILEGQNQGKIEGSTKVKGHEGKILVQAVDHTIEIPKSPQTGLPTGKRVHLPMT 150
           MPMPCYL LEG+ QG IEGS  + GHE KILVQ V+H IEIPK+ QTGLPTG R+H PM 
Sbjct: 1   MPMPCYLTLEGETQGNIEGSCAIAGHENKILVQGVEHKIEIPKNLQTGLPTGPRIHGPMM 60

Query: 151 LTKEIDKSSPKLFQALTSGEQMKDVTLEYYRISPKGTEEKYYTVKLSNAILTKTVSRQKT 210
           LTKEIDKSSPKL QALTSGE MK V LEY+RI+  G +E YYTVKL NAIL +   R  T
Sbjct: 61  LTKEIDKSSPKLAQALTSGEHMKSVVLEYWRINKDGKQEHYYTVKLENAILMEI--RSWT 118

Query: 211 PGSLRSRNR 219
           P  L   N+
Sbjct: 119 PNCLVLDNK 127


>gb|EES52238.1| protein of unknown function DUF796 [Leptospirillum
           ferrodiazotrophum]
          Length = 161

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 75/129 (58%), Positives = 100/129 (77%), Gaps = 2/129 (1%)

Query: 91  MPMPCYLILEGQNQGKIEGSTKVKGHEGKILVQAVDHTIEIPKSPQTGLPTGKRVHLPMT 150
           MPMP Y  ++ +NQGKIEGS  +KG EG I VQ+ D+T+++PK+PQTGLPTG+RVH P+T
Sbjct: 1   MPMPLYAFVQAKNQGKIEGSCTIKGREGAIQVQSFDYTVDLPKNPQTGLPTGRRVHNPIT 60

Query: 151 LTKEIDKSSPKLFQALTSGEQMKDVTLEYYRISPKGTEEKYYTVKLSNAILTKTVSRQKT 210
           +TKEIDK+SPKLFQAL +GEQM  VT+++YRI+P+G EEKYYT +L NA +     R   
Sbjct: 61  ITKEIDKASPKLFQALCTGEQMTKVTIDWYRINPQGKEEKYYTTELENATIVAI--RDWM 118

Query: 211 PGSLRSRNR 219
           P  L++ +R
Sbjct: 119 PNVLKAEDR 127