BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4721.p (244 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_02486145.1| DNA-binding response regulator [Burkholderia ... 287 8e-76 ref|YP_105470.1| DNA-binding response regulator [Burkholderia ma... 286 1e-75 ref|YP_111501.1| two-component response regulator protein [Burkh... 286 2e-75 ref|ZP_04881164.1| DNA-binding response regulator [Burkholderia ... 284 9e-75 ref|ZP_02466803.1| DNA-binding response regulator [Burkholderia ... 281 9e-74 >ref|ZP_02486145.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] ref|ZP_02510364.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] Length = 245 Score = 287 bits (735), Expect = 8e-76, Method: Composition-based stats. Identities = 140/239 (58%), Positives = 179/239 (74%), Gaps = 2/239 (0%) Query: 7 PKILVVEDDHSMRQLLVEYLAGHGLPADSAINAAEANAALAARSYDLVLLDLGLPDADGA 66 P +LVVEDD +R++L YL+GHG+ D AA A ++ R Y++VLLDLGLPD DG Sbjct: 8 PAVLVVEDDEPLRRVLCNYLSGHGMAVDGVGTAAAAAESVGRREYEMVLLDLGLPDGDGI 67 Query: 67 ELARLWRRESNMSIICVTGRDEEADLVMGLELGADDYITKPFSLREVLARVRAVLRRTGQ 126 ++ WR +ICVTGR EEAD +MGLE GADDY+ KP+SLREVLAR+RA+ RR + Sbjct: 68 DVLLRWRETQRFPLICVTGRSEEADRIMGLEFGADDYVVKPYSLREVLARMRALWRR-AE 126 Query: 127 VAQTPVTRGKHPRAYQFAGWNLNLNTRRLTAPDQRSVALTNAEFNLLVVFLSAPGRIISR 186 + TPV RG+HPRAY+F GW LN+NTRRL+ D + + LT EFNLL FL +P R+++R Sbjct: 127 PSTTPVRRGRHPRAYRFDGWTLNMNTRRLSTRDAQEIPLTVGEFNLLAFFLGSPSRVVTR 186 Query: 187 EQLIEGTRAFDDVYDRAIDVQILRLRRKLEADPKNPALLRTERGAGYFLDT-EIETLWG 244 QL+E TRAFDDV+DRA+DVQI RLR+K+E DPK+P L+RTERG GY+ D E+ETLWG Sbjct: 187 AQLLECTRAFDDVFDRAVDVQIWRLRKKIEKDPKHPELIRTERGVGYYFDAKEVETLWG 245 >ref|YP_105470.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] ref|YP_990210.1| DNA-binding response regulator [Burkholderia mallei SAVP1] ref|YP_001024528.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] ref|YP_001078852.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] ref|ZP_02269533.1| DNA-binding response regulator VirG [Burkholderia mallei PRL-20] ref|ZP_02407395.1| DNA-binding response regulator [Burkholderia pseudomallei DM98] ref|ZP_02460149.1| DNA-binding response regulator [Burkholderia pseudomallei 9] ref|ZP_02494285.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] ref|ZP_02502520.1| DNA-binding response regulator [Burkholderia pseudomallei 112] ref|ZP_03456614.1| DNA-binding response regulator [Burkholderia pseudomallei 576] ref|ZP_03791662.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] ref|ZP_04521528.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] ref|ZP_04610537.1| DNA-binding response regulator VirG [Burkholderia mallei GB8 horse 4] ref|ZP_04971835.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gb|AAU46907.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gb|ABM49028.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gb|ABM99704.1| DNA-binding response regulator VirG [Burkholderia mallei NCTC 10229] gb|ABO03294.1| DNA-binding response regulator VirG [Burkholderia mallei NCTC 10247] gb|EDK82710.1| DNA-binding response regulator [Burkholderia mallei 2002721280] tpg|DAA06010.1| TPA_exp: VirG [Burkholderia mallei] gb|EEC31751.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gb|EEH27970.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gb|EEP50442.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gb|EEP84192.1| DNA-binding response regulator VirG [Burkholderia mallei GB8 horse 4] gb|EES42950.1| DNA-binding response regulator VirG [Burkholderia mallei PRL-20] Length = 245 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 140/239 (58%), Positives = 178/239 (74%), Gaps = 2/239 (0%) Query: 7 PKILVVEDDHSMRQLLVEYLAGHGLPADSAINAAEANAALAARSYDLVLLDLGLPDADGA 66 P +LVVEDD +R++L YL+GHG+ D AA A ++ R Y++VLLDLGLPD DG Sbjct: 8 PAVLVVEDDEPLRRVLCNYLSGHGMAVDGVGTAAAAAESVGRREYEMVLLDLGLPDGDGI 67 Query: 67 ELARLWRRESNMSIICVTGRDEEADLVMGLELGADDYITKPFSLREVLARVRAVLRRTGQ 126 ++ WR +ICVTGR EEAD +MGLE GADDY+ KP+SLREVLAR+RA+ RR + Sbjct: 68 DVLLRWRETQRFPLICVTGRSEEADRIMGLEFGADDYVVKPYSLREVLARMRALWRR-AE 126 Query: 127 VAQTPVTRGKHPRAYQFAGWNLNLNTRRLTAPDQRSVALTNAEFNLLVVFLSAPGRIISR 186 + TPV RG+HPRAY+F GW LN+NTRRL D + + LT EFNLL FL +P R+++R Sbjct: 127 PSTTPVRRGRHPRAYRFDGWTLNMNTRRLLTRDAQEIPLTVGEFNLLAFFLGSPSRVVTR 186 Query: 187 EQLIEGTRAFDDVYDRAIDVQILRLRRKLEADPKNPALLRTERGAGYFLDT-EIETLWG 244 QL+E TRAFDDV+DRA+DVQI RLR+K+E DPK+P L+RTERG GY+ D E+ETLWG Sbjct: 187 AQLLECTRAFDDVFDRAVDVQIWRLRKKIEKDPKHPELIRTERGVGYYFDAKEVETLWG 245 >ref|YP_111501.1| two-component response regulator protein [Burkholderia pseudomallei K96243] ref|YP_335690.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] ref|YP_001063115.1| DNA-binding response regulator [Burkholderia pseudomallei 668] ref|YP_001076056.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] ref|ZP_01768890.1| DNA-binding response regulator [Burkholderia pseudomallei 305] ref|ZP_02415910.1| DNA-binding response regulator [Burkholderia pseudomallei 14] ref|ZP_02451984.1| DNA-binding response regulator [Burkholderia pseudomallei 91] ref|ZP_02475642.1| DNA-binding response regulator [Burkholderia pseudomallei B7210] ref|ZP_04812497.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] ref|ZP_04893330.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] ref|ZP_04900635.1| DNA-binding response regulator [Burkholderia pseudomallei S13] ref|ZP_04955021.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] ref|ZP_04968944.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] emb|CAH38967.1| putative two-component response regulator protein [Burkholderia pseudomallei K96243] gb|ABA51757.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gb|ABN86844.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gb|ABN93658.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gb|EBA46801.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gb|EDO87962.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gb|EDO90168.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gb|EDS83647.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gb|EES23122.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gb|EET04543.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 245 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 140/239 (58%), Positives = 178/239 (74%), Gaps = 2/239 (0%) Query: 7 PKILVVEDDHSMRQLLVEYLAGHGLPADSAINAAEANAALAARSYDLVLLDLGLPDADGA 66 P +LVVEDD +R++L YL+GHG+ D AA A ++ R Y++VLLDLGLPD DG Sbjct: 8 PAVLVVEDDEPLRRVLCNYLSGHGMAVDGVGTAAAAAESVGRREYEMVLLDLGLPDGDGI 67 Query: 67 ELARLWRRESNMSIICVTGRDEEADLVMGLELGADDYITKPFSLREVLARVRAVLRRTGQ 126 ++ WR +ICVTGR EEAD +MGLE GADDY+ KP+SLREVLAR+RA+ RR + Sbjct: 68 DVLLRWRETQRFPLICVTGRSEEADRIMGLEFGADDYVVKPYSLREVLARMRALWRR-AE 126 Query: 127 VAQTPVTRGKHPRAYQFAGWNLNLNTRRLTAPDQRSVALTNAEFNLLVVFLSAPGRIISR 186 + TPV RG+HPRAY+F GW LN+NTRRL D + + LT EFNLL FL +P R+++R Sbjct: 127 PSTTPVRRGRHPRAYRFDGWTLNMNTRRLLTRDAQEIPLTVGEFNLLAFFLGSPSRVVTR 186 Query: 187 EQLIEGTRAFDDVYDRAIDVQILRLRRKLEADPKNPALLRTERGAGYFLDT-EIETLWG 244 QL+E TRAFDDV+DRA+DVQI RLR+K+E DPK+P L+RTERG GY+ D E+ETLWG Sbjct: 187 AQLLECTRAFDDVFDRAVDVQIWRLRKKIEKDPKHPELIRTERGVGYYFDAKEVETLWG 245 >ref|ZP_04881164.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] ref|ZP_04910545.1| DNA-binding response regulator [Burkholderia mallei FMH] ref|ZP_04915507.1| DNA-binding response regulator [Burkholderia mallei JHU] gb|EDK52151.1| DNA-binding response regulator [Burkholderia mallei FMH] gb|EDK57453.1| DNA-binding response regulator [Burkholderia mallei JHU] gb|EDP85518.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] Length = 236 Score = 284 bits (726), Expect = 9e-75, Method: Composition-based stats. Identities = 139/237 (58%), Positives = 177/237 (74%), Gaps = 2/237 (0%) Query: 9 ILVVEDDHSMRQLLVEYLAGHGLPADSAINAAEANAALAARSYDLVLLDLGLPDADGAEL 68 +LVVEDD +R++L YL+GHG+ D AA A ++ R Y++VLLDLGLPD DG ++ Sbjct: 1 MLVVEDDEPLRRVLCNYLSGHGMAVDGVGTAAAAAESVGRREYEMVLLDLGLPDGDGIDV 60 Query: 69 ARLWRRESNMSIICVTGRDEEADLVMGLELGADDYITKPFSLREVLARVRAVLRRTGQVA 128 WR +ICVTGR EEAD +MGLE GADDY+ KP+SLREVLAR+RA+ RR + + Sbjct: 61 LLRWRETQRFPLICVTGRSEEADRIMGLEFGADDYVVKPYSLREVLARMRALWRR-AEPS 119 Query: 129 QTPVTRGKHPRAYQFAGWNLNLNTRRLTAPDQRSVALTNAEFNLLVVFLSAPGRIISREQ 188 TPV RG+HPRAY+F GW LN+NTRRL D + + LT EFNLL FL +P R+++R Q Sbjct: 120 TTPVRRGRHPRAYRFDGWTLNMNTRRLLTRDAQEIPLTVGEFNLLAFFLGSPSRVVTRAQ 179 Query: 189 LIEGTRAFDDVYDRAIDVQILRLRRKLEADPKNPALLRTERGAGYFLDT-EIETLWG 244 L+E TRAFDDV+DRA+DVQI RLR+K+E DPK+P L+RTERG GY+ D E+ETLWG Sbjct: 180 LLECTRAFDDVFDRAVDVQIWRLRKKIEKDPKHPELIRTERGVGYYFDAKEVETLWG 236 >ref|ZP_02466803.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43] Length = 244 Score = 281 bits (718), Expect = 9e-74, Method: Composition-based stats. Identities = 140/244 (57%), Positives = 179/244 (73%), Gaps = 2/244 (0%) Query: 1 MSTVPPPKILVVEDDHSMRQLLVEYLAGHGLPADSAINAAEANAALAARSYDLVLLDLGL 60 M+ P +LVVEDD +R++L YL+GHG+ D AA A ++ R Y++VLLDLGL Sbjct: 1 MNATRSPAVLVVEDDEPLRRVLCNYLSGHGMAVDGVGTAAAAADSVERREYEMVLLDLGL 60 Query: 61 PDADGAELARLWRRESNMSIICVTGRDEEADLVMGLELGADDYITKPFSLREVLARVRAV 120 PD DG ++ WR +ICVTGR EEAD +MGLE GADDY+ KP+SLREVLAR+RA+ Sbjct: 61 PDGDGIDVLLRWRDSQRFPLICVTGRSEEADRIMGLEFGADDYVVKPYSLREVLARMRAL 120 Query: 121 LRRTGQVAQTPVTRGKHPRAYQFAGWNLNLNTRRLTAPDQRSVALTNAEFNLLVVFLSAP 180 RR + + TPV RG+HPRAY+F GW LN+NTRRL+ D + V LT EFNLL FL +P Sbjct: 121 WRR-AEPSTTPVRRGRHPRAYRFDGWTLNMNTRRLSTRDAQDVPLTVGEFNLLAFFLGSP 179 Query: 181 GRIISREQLIEGTRAFDDVYDRAIDVQILRLRRKLEADPKNPALLRTERGAG-YFLDTEI 239 R+++R QL+E TRAFDDV+DRA+DVQI RLR+K+E +PK+P L+RTERG G YF T + Sbjct: 180 SRVVTRAQLLECTRAFDDVFDRAVDVQIWRLRKKIEKNPKHPELIRTERGVGYYFAATNV 239 Query: 240 ETLW 243 ETLW Sbjct: 240 ETLW 243