BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4720.p (268 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001565345.1| PAS/PAC sensor hybrid histidine kinase [Delf... 121 1e-25 emb|CBA28026.1| hypothetical protein Csp_A05220 [Curvibacter put... 120 2e-25 ref|YP_004487868.1| PAS/PAC sensor hybrid histidine kinase [Delf... 119 4e-25 ref|XP_002338091.1| predicted protein [Populus trichocarpa] >gi|... 119 4e-25 ref|ZP_04762091.1| PAS/PAC sensor hybrid histidine kinase [Acido... 109 4e-22 >ref|YP_001565345.1| PAS/PAC sensor hybrid histidine kinase [Delftia acidovorans SPH-1] gb|ABX36960.1| PAS/PAC sensor hybrid histidine kinase [Delftia acidovorans SPH-1] Length = 749 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 110/223 (49%), Gaps = 18/223 (8%) Query: 5 VPPEEAVWLEVTDDGAGIAKEHLARLFEPFFTTRGGPGGKGTGLGLAIVAGIATEHDGGV 64 +PP V L V D+G G+ L R+FEPFFTT+ P G+GTGLGL +V G+ H G V Sbjct: 505 LPPVSYVALSVQDNGPGMDARTLQRIFEPFFTTK--PVGQGTGLGLPVVHGVMRNHGGAV 562 Query: 65 AVLT-SHEGTVFRLLLPVESQLAAQWARSADADAAQTPPSPISSTGEVITPLVPSWSGSH 123 V + +G+ F L P LA A A A+TPPS TP P ++ Sbjct: 563 DVYSIPGQGSRFTLYFPPADALAPAEYVPAQASVAETPPSLPEPLAAAETPTGPQFALLP 622 Query: 124 DTASEMTSDDSTNVMEWQGQGQSVFLVDDDPALRPLYQRWLSGMGMEPIGFADPVEALNE 183 D Q Q V VDDD AL L QR L G + GF DP EA Sbjct: 623 DP---------------QAAQQHVMYVDDDQALVFLVQRLLRRRGYQVSGFTDPHEATEA 667 Query: 184 LTIEPRAVDLLVTDLDMPQISGEALIVQARALRADLPVLLCSG 226 L P+ DLLVTD +MP SG L+ +A +++ LP+ L SG Sbjct: 668 LRAAPQDYDLLVTDYNMPGYSGIDLVYEALSIQPLLPIALASG 710 >emb|CBA28026.1| hypothetical protein Csp_A05220 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 735 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 113/223 (50%), Gaps = 45/223 (20%) Query: 5 VPPEEAVWLEVTDDGAGIAKEHLARLFEPFFTTRGGPGGKGTGLGLAIVAGIATEHDGGV 64 VPP V L V D G+G++++ + R+FEPFFTTR G+GTGLGLA+V GI H GG+ Sbjct: 514 VPPGRYVTLRVRDTGSGMSQQTIERIFEPFFTTR--QVGQGTGLGLAVVHGIMQTHQGGI 571 Query: 65 AVLTS-HEGTVFRLLLPVESQLAAQWARSADADAAQTPPSPISSTGEVITPLVPSWSGSH 123 V ++ +EG+VF L P + A P P++ Sbjct: 572 DVQSAPNEGSVFTLYFPA----------TGAAPVEALEPEPVT----------------- 604 Query: 124 DTASEMTSDDSTNVMEWQGQGQSVFLVDDDPALRPLYQRWLSGMGMEPIGFADPVEALNE 183 E +G+G+ V VDDD AL L R L+ G + F DP+EA Sbjct: 605 ---------------EVEGRGRHVMYVDDDQALVFLVNRVLTRKGFKVTVFTDPLEAEAA 649 Query: 184 LTIEPRAVDLLVTDLDMPQISGEALIVQARALRADLPVLLCSG 226 L +P DLLVTD +MP SG L+ A+A+RADLPV + SG Sbjct: 650 LRSQPEIYDLLVTDYNMPGYSGLDLLRDAKAIRADLPVAVASG 692 >ref|YP_004487868.1| PAS/PAC sensor hybrid histidine kinase [Delftia sp. Cs1-4] gb|AEF89513.1| PAS/PAC sensor hybrid histidine kinase [Delftia sp. Cs1-4] Length = 749 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 86/223 (38%), Positives = 109/223 (48%), Gaps = 18/223 (8%) Query: 5 VPPEEAVWLEVTDDGAGIAKEHLARLFEPFFTTRGGPGGKGTGLGLAIVAGIATEHDGGV 64 +PP V L V D+G G+ L R+FEPFFTT+ P G+GTGLGL +V G+ H G V Sbjct: 505 LPPVSYVALSVQDNGPGMDARTLQRIFEPFFTTK--PVGQGTGLGLPVVHGVMRNHGGAV 562 Query: 65 AVLT-SHEGTVFRLLLPVESQLAAQWARSADADAAQTPPSPISSTGEVITPLVPSWSGSH 123 V + +G+ F L P L A A A+TPPS TP P ++ Sbjct: 563 DVYSIPGQGSRFTLYFPPADALTPAEYAPAQAPVAETPPSLPEPLAAAETPTGPQFALLP 622 Query: 124 DTASEMTSDDSTNVMEWQGQGQSVFLVDDDPALRPLYQRWLSGMGMEPIGFADPVEALNE 183 D Q Q V VDDD AL L QR L G + GF DP EA Sbjct: 623 DP---------------QAAQQHVMYVDDDQALVFLVQRLLRRRGYQVSGFTDPHEATEA 667 Query: 184 LTIEPRAVDLLVTDLDMPQISGEALIVQARALRADLPVLLCSG 226 L P+ DLLVTD +MP SG L+ +A +++ LP+ L SG Sbjct: 668 LRAAPQDYDLLVTDYNMPGYSGIDLVYEALSIQPLLPIALASG 710 >ref|XP_002338091.1| predicted protein [Populus trichocarpa] gb|EEF07934.1| predicted protein [Populus trichocarpa] Length = 407 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 110/223 (49%), Gaps = 18/223 (8%) Query: 5 VPPEEAVWLEVTDDGAGIAKEHLARLFEPFFTTRGGPGGKGTGLGLAIVAGIATEHDGGV 64 +PP V L V D+G G+ L R+FEPFFTT+ P G+GTGLGL +V G+ H G V Sbjct: 77 LPPVSYVALSVQDNGPGMDARTLQRIFEPFFTTK--PVGQGTGLGLPVVHGVMRNHGGAV 134 Query: 65 AVLT-SHEGTVFRLLLPVESQLAAQWARSADADAAQTPPSPISSTGEVITPLVPSWSGSH 123 V + +G+ F L P LA A A A+TPPS TP P ++ Sbjct: 135 DVYSIPGQGSRFTLYFPPADALAPAEYAPAQASVAETPPSLPEPLAAAETPTGPQFALLP 194 Query: 124 DTASEMTSDDSTNVMEWQGQGQSVFLVDDDPALRPLYQRWLSGMGMEPIGFADPVEALNE 183 D Q Q V VDDD AL L QR L G + GF DP EA Sbjct: 195 DP---------------QAAQQHVMYVDDDQALVFLVQRLLRRRGYQVSGFTDPHEATEA 239 Query: 184 LTIEPRAVDLLVTDLDMPQISGEALIVQARALRADLPVLLCSG 226 L P+ DLLVTD +MP SG L+ +A +++ LP+ L SG Sbjct: 240 LRAAPQDYDLLVTDYNMPGYSGIDLVYEALSIQPLLPIALASG 282 >ref|ZP_04762091.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax delafieldii 2AN] gb|EER61129.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax delafieldii 2AN] Length = 742 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 88/221 (39%), Positives = 108/221 (48%), Gaps = 21/221 (9%) Query: 7 PEEAVWLEVTDDGAGIAKEHLARLFEPFFTTRGGPGGKGTGLGLAIVAGIATEHDGGVAV 66 P + V L V D G G+ L R+FEPFFTT+ P G+GTGLGLA+V G+ H+G V V Sbjct: 497 PVDYVALTVRDTGPGMDAATLERIFEPFFTTK--PVGQGTGLGLAVVHGVMRTHEGAVDV 554 Query: 67 L-TSHEGTVFRLLLPVESQLAAQWARSADADAAQTPPSPISSTGEVITPLVPSWSGSHDT 125 T G+ F L PV A SA + TP + +S + + Sbjct: 555 QSTPGHGSRFTLYFPV--------ATSAAPASHGTPGAHGTSAAAATLVPAAAATPPAPA 606 Query: 126 ASEMTSDDSTNVMEWQGQGQSVFLVDDDPALRPLYQRWLSGMGMEPIGFADPVEALNELT 185 A E +VM VDDD AL L QR L G E GF DP EA L Sbjct: 607 AQENAPAKKHHVM----------YVDDDQALVFLVQRLLRRRGYEVSGFTDPHEATAALR 656 Query: 186 IEPRAVDLLVTDLDMPQISGEALIVQARALRADLPVLLCSG 226 P+A DLLVTD +MP G L+ +AR +R DLPV L SG Sbjct: 657 AAPQAYDLLVTDYNMPGFCGVDLVREARLIRPDLPVALASG 697