BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4718.p (385 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_439068.1| sensor histidine kinase [Burkholderia thailande... 179 9e-43 ref|ZP_02384271.1| sensor histidine kinase [Burkholderia thailan... 179 9e-43 ref|ZP_02370362.1| sensor histidine kinase [Burkholderia thailan... 177 2e-42 ref|ZP_01768719.1| sensor histidine kinase [Burkholderia pseudom... 172 1e-40 ref|YP_001063116.1| sensor histidine kinase [Burkholderia pseudo... 171 2e-40 >ref|YP_439068.1| sensor histidine kinase [Burkholderia thailandensis E264] gb|ABC35465.1| sensor histidine kinase [Burkholderia thailandensis E264] Length = 566 Score = 179 bits (453), Expect = 9e-43, Method: Composition-based stats. Identities = 147/357 (41%), Positives = 200/357 (56%), Gaps = 10/357 (2%) Query: 22 LLYY---LLASPAVGIEQSTTLSAIAWPAPTFMIALLW--RKPLREWPVYLVAVMVAIMF 76 LL+Y LL+ P + TLSA+ WPAP IALL R+PL W + ++ V ++ Sbjct: 3 LLFYANHLLSRPGACTSLNHTLSAVVWPAPVLGIALLLHCRRPL-AWGLGAASLFVTLLA 61 Query: 77 VGQHDRLSVYTDAGFAVLNAFEVAACALVGRRFVARDGQLDTLRRLSRFLLLLPVGVIAV 136 G D + + DA FA +NA E A A + RR+V G +DTLR + F+LLLP+G+ A+ Sbjct: 62 AGSLDWVPWHVDALFAAVNAVEAIAGAWLARRYVTPGGGVDTLRGFAMFVLLLPLGMAAM 121 Query: 137 VAACGAT-LAVHAMHGNWWHEWSTLLVGNGLAILVLVPAFLTWSGAHGNARLLSLPSILC 195 A A L+V W +EWS N LA+L L+PA LTW+ A L + L Sbjct: 122 HATLAAAILSVWMNDRGWLNEWSRAYAANALALLALLPALLTWNARACRAAWLRARNQLP 181 Query: 196 SLMVLCALLASVTFDLPEEVMRVMLSLALAGAALYGGMRSATLTMSTAAVLAVLLTLYDL 255 +L +L + + EV R +L+L+L AAL GG+ A+ + AAV + +TL Sbjct: 182 ALATFGSLCFASIWGGQAEVARALLALSLCWAALEGGLVLASQLNALAAVGLIAMTLGGR 241 Query: 256 GPY--RQDGLDSTLRLQIDLAGYAMLTFFIAVAMRERQALTLRMEQMRRFESLGLMAGSI 313 GPY DG LQ+DL G A+L+ IA+A ER+ L +E+ RRFESLG AG I Sbjct: 242 GPYAFHYDG-HGVWALQVDLIGVAILSMCIAIATGERRRLAWLVERSRRFESLGFFAGGI 300 Query: 314 AHDFNNVLGAAGGYAELAAERLPAESPAQVPLREVCSAVARGRDLTEQILLAGRRGD 370 HDF+NVL +AE A+ERL + A + E+ AV RGRDL QILLA RRG+ Sbjct: 301 VHDFSNVLTTIDCHAEYASERLARGARADESIDEIHRAVERGRDLATQILLAARRGE 357 >ref|ZP_02384271.1| sensor histidine kinase [Burkholderia thailandensis Bt4] ref|ZP_05590438.1| sensor histidine kinase [Burkholderia thailandensis E264] Length = 607 Score = 179 bits (453), Expect = 9e-43, Method: Composition-based stats. Identities = 144/351 (41%), Positives = 197/351 (56%), Gaps = 7/351 (1%) Query: 25 YLLASPAVGIEQSTTLSAIAWPAPTFMIALLW--RKPLREWPVYLVAVMVAIMFVGQHDR 82 +LL+ P + TLSA+ WPAP IALL R+PL W + ++ V ++ G D Sbjct: 50 HLLSRPGACTSLNHTLSAVVWPAPVLGIALLLHCRRPL-AWGLGAASLFVTLLAAGSLDW 108 Query: 83 LSVYTDAGFAVLNAFEVAACALVGRRFVARDGQLDTLRRLSRFLLLLPVGVIAVVAACGA 142 + + DA FA +NA E A A + RR+V G +DTLR + F+LLLP+G+ A+ A A Sbjct: 109 VPWHVDALFAAVNAVEAIAGAWLARRYVTPGGGVDTLRGFAMFVLLLPLGMAAMHATLAA 168 Query: 143 T-LAVHAMHGNWWHEWSTLLVGNGLAILVLVPAFLTWSGAHGNARLLSLPSILCSLMVLC 201 L+V W +EWS N LA+L L+PA LTW+ A L + L +L Sbjct: 169 AILSVWMNDRGWLNEWSRAYAANALALLALLPALLTWNARACRAAWLRARNQLPALATFG 228 Query: 202 ALLASVTFDLPEEVMRVMLSLALAGAALYGGMRSATLTMSTAAVLAVLLTLYDLGPY--R 259 +L + + EV R +L+L+L AAL GG+ A+ + AAV + +TL GPY Sbjct: 229 SLCFASIWGGQAEVARALLALSLCWAALEGGLVLASQLNALAAVGLIAMTLGGRGPYAFH 288 Query: 260 QDGLDSTLRLQIDLAGYAMLTFFIAVAMRERQALTLRMEQMRRFESLGLMAGSIAHDFNN 319 DG LQ+DL G A+L+ IA+A ER+ L +E+ RRFESLG AG I HDF+N Sbjct: 289 YDG-HGVWALQVDLIGVAILSMCIAIATGERRRLAWLVERSRRFESLGFFAGGIVHDFSN 347 Query: 320 VLGAAGGYAELAAERLPAESPAQVPLREVCSAVARGRDLTEQILLAGRRGD 370 VL +AE A+ERL + A + E+ AV RGRDL QILLA RRG+ Sbjct: 348 VLTTIDCHAEYASERLARGARADESIDEIHRAVERGRDLATQILLAARRGE 398 >ref|ZP_02370362.1| sensor histidine kinase [Burkholderia thailandensis TXDOH] Length = 611 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 143/351 (40%), Positives = 196/351 (55%), Gaps = 7/351 (1%) Query: 25 YLLASPAVGIEQSTTLSAIAWPAPTFMIALLW--RKPLREWPVYLVAVMVAIMFVGQHDR 82 +LL+ P + TLSA+ WPAP IALL R+PL W + ++ V ++ G D Sbjct: 50 HLLSRPGACTSLNHTLSAVVWPAPVLGIALLLHCRRPL-AWGLGAASLFVTLLAAGSLDW 108 Query: 83 LSVYTDAGFAVLNAFEVAACALVGRRFVARDGQLDTLRRLSRFLLLLPVGVIAVVAACGA 142 + + DA FA +NA E A A + RR+V G +DTLR + F+LLLP+G+ A+ A A Sbjct: 109 VPWHVDALFAAVNAVEAIAGAWLARRYVTPGGGVDTLRGFAMFVLLLPLGMAAMHATLAA 168 Query: 143 T-LAVHAMHGNWWHEWSTLLVGNGLAILVLVPAFLTWSGAHGNARLLSLPSILCSLMVLC 201 L+V W +EWS N LA+L L+PA LTW+ A L + L +L Sbjct: 169 AILSVWMNDRGWLNEWSRAYAANALALLALLPALLTWNARACRAAWLRARNQLPALATFG 228 Query: 202 ALLASVTFDLPEEVMRVMLSLALAGAALYGGMRSATLTMSTAAVLAVLLTLYDLGPY--R 259 +L + + EV R +L+L+L AAL GG+ A+ + AAV + +TL GPY Sbjct: 229 SLCFASIWGGQAEVARALLALSLCWAALEGGLVLASQLNALAAVGLIAMTLGGRGPYAFH 288 Query: 260 QDGLDSTLRLQIDLAGYAMLTFFIAVAMRERQALTLRMEQMRRFESLGLMAGSIAHDFNN 319 DG LQ+DL G A+L+ IA+A ER+ L +E+ RRFESLG AG I HDF+N Sbjct: 289 YDG-HGVWALQVDLIGVAILSMCIAIATGERRRLARLVERSRRFESLGFFAGGIVHDFSN 347 Query: 320 VLGAAGGYAELAAERLPAESPAQVPLREVCSAVARGRDLTEQILLAGRRGD 370 VL +AE A+ER + A + E+ AV RGRDL QILLA RRG+ Sbjct: 348 VLTTIDCHAEYASERFARGARADDSIDEIHRAVERGRDLATQILLAARRGE 398 >ref|ZP_01768719.1| sensor histidine kinase [Burkholderia pseudomallei 305] gb|EBA46630.1| sensor histidine kinase [Burkholderia pseudomallei 305] Length = 614 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 140/351 (39%), Positives = 196/351 (55%), Gaps = 7/351 (1%) Query: 25 YLLASPAVGIEQSTTLSAIAWPAPTFMIALLW--RKPLREWPVYLVAVMVAIMFVGQHDR 82 +LL+ P + TLSA+ WPAP IALL R+PL W + A+ ++ G D Sbjct: 54 HLLSRPGACTSLNHTLSAVVWPAPVLGIALLLHCRRPLAWW-LGAGALFATLLAAGSLDW 112 Query: 83 LSVYTDAGFAVLNAFEVAACALVGRRFVARDGQLDTLRRLSRFLLLLPVGVIAVVAACGA 142 + + DA FA +N E A A + RR++ G +DTLR + F+LLLP+G+ A+ A A Sbjct: 113 VPWHVDALFAAVNVVEAIAGAWLARRYLIAGGGVDTLRGFAMFVLLLPLGMAAMHATLAA 172 Query: 143 T-LAVHAMHGNWWHEWSTLLVGNGLAILVLVPAFLTWSGAHGNARLLSLPSILCSLMVLC 201 L+V W EWS N LA+LVL+PA LTW+ A + L L Sbjct: 173 AILSVWMNDREWLSEWSRAYAANALALLVLLPALLTWNARACGATWSRSRNQLPVLATFG 232 Query: 202 ALLASVTFDLPEEVMRVMLSLALAGAALYGGMRSATLTMSTAAVLAVLLTLYDLGPY--R 259 +L + + EV R +L+L+L+ AAL GG+ A+ + +A+ + +TL GPY Sbjct: 233 SLCFASIWGYQAEVARALLALSLSWAALEGGLVLASQLNALSAIALIAMTLGGRGPYAWH 292 Query: 260 QDGLDSTLRLQIDLAGYAMLTFFIAVAMRERQALTLRMEQMRRFESLGLMAGSIAHDFNN 319 DG LQ+DL G A+L+ IA+A ER+ L ++E+ RRFESLG AG I HDF+N Sbjct: 293 HDG-HGVWALQVDLIGVAILSMCIAIATGERRRLARQIERSRRFESLGFFAGGIVHDFSN 351 Query: 320 VLGAAGGYAELAAERLPAESPAQVPLREVCSAVARGRDLTEQILLAGRRGD 370 VL +AE A+ERL + + A + E+ AV RGRDL QILLA RRG+ Sbjct: 352 VLTTIDCHAEYASERLASGARADDSIDEIHRAVERGRDLAAQILLAARRGE 402 >ref|YP_001063116.1| sensor histidine kinase [Burkholderia pseudomallei 668] gb|ABN87783.1| sensor histidine kinase [Burkholderia pseudomallei 668] Length = 610 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 139/351 (39%), Positives = 197/351 (56%), Gaps = 7/351 (1%) Query: 25 YLLASPAVGIEQSTTLSAIAWPAPTFMIALLW--RKPLREWPVYLVAVMVAIMFVGQHDR 82 +LL+ P + TLSA+ WPAP IALL R+PL W + ++ ++ G D Sbjct: 54 HLLSRPGACTSLNHTLSAVVWPAPVLGIALLLHCRRPLAWW-LGAGSLFATLLAAGSLDW 112 Query: 83 LSVYTDAGFAVLNAFEVAACALVGRRFVARDGQLDTLRRLSRFLLLLPVGVIAVVAACGA 142 + + DA FA +N E A A + RR++ G +DTLR + F+LLLP+G+ A+ A A Sbjct: 113 VPWHVDALFAAVNVVEAIAGAWLARRYLIAGGGVDTLRGFAMFVLLLPLGMAAMHATLAA 172 Query: 143 T-LAVHAMHGNWWHEWSTLLVGNGLAILVLVPAFLTWSGAHGNARLLSLPSILCSLMVLC 201 L+V W EWS N LA+LVL+PA LTW+ A + L +L Sbjct: 173 AILSVWMNDREWLSEWSRAYAANALALLVLLPALLTWNARACGAAWSRSRNQLPALATFG 232 Query: 202 ALLASVTFDLPEEVMRVMLSLALAGAALYGGMRSATLTMSTAAVLAVLLTLYDLGPY--R 259 +L + + EV R +L+L+L+ AAL GG+ A+ + +A+ + +TL GPY Sbjct: 233 SLCFASIWGYQAEVARALLALSLSWAALEGGLVLASQLNALSAIALIAMTLGGRGPYAWH 292 Query: 260 QDGLDSTLRLQIDLAGYAMLTFFIAVAMRERQALTLRMEQMRRFESLGLMAGSIAHDFNN 319 DG LQ+DL G A+L+ IA+A ER+ L ++E+ RRFESLG AG I HDF+N Sbjct: 293 HDG-HGVWALQVDLIGVAILSMCIAIATGERRRLARQIERSRRFESLGFFAGGIVHDFSN 351 Query: 320 VLGAAGGYAELAAERLPAESPAQVPLREVCSAVARGRDLTEQILLAGRRGD 370 VL +AE A+ERL + + A + E+ AV RGRDL QILLA RRG+ Sbjct: 352 VLTTIDCHAEYASERLASGARADDSIDEIHRAVERGRDLAAQILLAARRGE 402