BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4709.p         (131 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_02384256.1| hypothetical protein BthaB_04976 [Burkholderi...   129   1e-28
ref|ZP_02370346.1| hypothetical protein BthaT_05016 [Burkholderi...   128   2e-28
ref|YP_439056.1| hypothetical protein BTH_II0859 [Burkholderia t...   118   3e-25
ref|ZP_02359088.1| hypothetical protein BoklE_26689 [Burkholderi...   114   3e-24
ref|ZP_02466821.1| hypothetical protein Bpse38_25919 [Burkholder...   110   5e-23

>ref|ZP_02384256.1| hypothetical protein BthaB_04976 [Burkholderia thailandensis Bt4]
 ref|ZP_05590426.1| hypothetical protein BthaA_23546 [Burkholderia thailandensis E264]
          Length = 130

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 86/131 (65%), Positives = 96/131 (73%), Gaps = 1/131 (0%)

Query: 1   MFAVTKQAGQCMAMPDVCNTPIPPAGPVPLPYPNIAMPMMGNPATTKVMISGMPALTKSS 60
           MF VT  +G CM+  DVC TP P  GPVP+PYPN  +PMM    TTKV++ GMPALTK S
Sbjct: 1   MFVVTTASGLCMSPADVCKTPTP-GGPVPIPYPNTGLPMMAASITTKVLVCGMPALTKKS 59

Query: 61  KITMSNGDQPGVNGGVVSGKIMGPAEFIMGSMKVKLEGNPAVRMGDTTKQNDGNAVGAVL 120
            I M+NGDQPG  GG VSGKIMG  EF  GS KVKLEG+PAVR+   TK NDGNA GAVL
Sbjct: 60  TIPMTNGDQPGTAGGAVSGKIMGKVEFAAGSAKVKLEGSPAVRLTTPTKHNDGNATGAVL 119

Query: 121 VPSQVKVMIMS 131
            PSQ KVM+MS
Sbjct: 120 QPSQQKVMVMS 130


>ref|ZP_02370346.1| hypothetical protein BthaT_05016 [Burkholderia thailandensis TXDOH]
          Length = 130

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 86/131 (65%), Positives = 96/131 (73%), Gaps = 1/131 (0%)

Query: 1   MFAVTKQAGQCMAMPDVCNTPIPPAGPVPLPYPNIAMPMMGNPATTKVMISGMPALTKSS 60
           MF VT  +G CM+  DVC TP P  GPVP+PYPN  +PMM    TTKV++ GMPALTK S
Sbjct: 1   MFVVTTASGLCMSPADVCKTPTP-GGPVPIPYPNTGVPMMAASITTKVLVCGMPALTKKS 59

Query: 61  KITMSNGDQPGVNGGVVSGKIMGPAEFIMGSMKVKLEGNPAVRMGDTTKQNDGNAVGAVL 120
            I M+NGDQPG  GG VSGKIMG  EF  GS KVKLEG+PAVR+   TK NDGNA GAVL
Sbjct: 60  TIPMTNGDQPGTAGGAVSGKIMGKVEFAAGSAKVKLEGSPAVRLTTPTKHNDGNATGAVL 119

Query: 121 VPSQVKVMIMS 131
            PSQ KVM+MS
Sbjct: 120 QPSQQKVMVMS 130


>ref|YP_439056.1| hypothetical protein BTH_II0859 [Burkholderia thailandensis E264]
 gb|ABC34315.1| conserved hypothetical protein [Burkholderia thailandensis E264]
          Length = 119

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 80/120 (66%), Positives = 89/120 (74%), Gaps = 1/120 (0%)

Query: 12  MAMPDVCNTPIPPAGPVPLPYPNIAMPMMGNPATTKVMISGMPALTKSSKITMSNGDQPG 71
           M+  DVC TP P  GPVP+PYPN  +PMM    TTKV++ GMPALTK S I M+NGDQPG
Sbjct: 1   MSPADVCKTPTP-GGPVPIPYPNTGLPMMAASITTKVLVCGMPALTKKSTIPMTNGDQPG 59

Query: 72  VNGGVVSGKIMGPAEFIMGSMKVKLEGNPAVRMGDTTKQNDGNAVGAVLVPSQVKVMIMS 131
             GG VSGKIMG  EF  GS KVKLEG+PAVR+   TK NDGNA GAVL PSQ KVM+MS
Sbjct: 60  TAGGAVSGKIMGKVEFAAGSAKVKLEGSPAVRLTTPTKHNDGNATGAVLQPSQQKVMVMS 119


>ref|ZP_02359088.1| hypothetical protein BoklE_26689 [Burkholderia oklahomensis EO147]
 ref|ZP_02366157.1| hypothetical protein BoklC_25838 [Burkholderia oklahomensis C6786]
          Length = 130

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 84/131 (64%), Positives = 95/131 (72%), Gaps = 1/131 (0%)

Query: 1   MFAVTKQAGQCMAMPDVCNTPIPPAGPVPLPYPNIAMPMMGNPATTKVMISGMPALTKSS 60
           MF VT  +G CM+  DVC TP  P GPVP+PYPN   PMMG+  TTKV++ GMPALTK S
Sbjct: 1   MFVVTTASGLCMSPADVCKTP-TPTGPVPVPYPNTGAPMMGSSITTKVLVCGMPALTKKS 59

Query: 61  KITMSNGDQPGVNGGVVSGKIMGPAEFIMGSMKVKLEGNPAVRMGDTTKQNDGNAVGAVL 120
            I M+NGDQPG  GGV+SGKIMG  EF  GS K+K EG+P VR+   TK NDGNA GAVL
Sbjct: 60  TIPMTNGDQPGTVGGVMSGKIMGKVEFAAGSAKIKFEGSPVVRLSTPTKHNDGNATGAVL 119

Query: 121 VPSQVKVMIMS 131
            PSQ KVM MS
Sbjct: 120 QPSQQKVMAMS 130


>ref|ZP_02466821.1| hypothetical protein Bpse38_25919 [Burkholderia thailandensis
           MSMB43]
          Length = 130

 Score =  110 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 79/131 (60%), Positives = 89/131 (67%), Gaps = 1/131 (0%)

Query: 1   MFAVTKQAGQCMAMPDVCNTPIPPAGPVPLPYPNIAMPMMGNPATTKVMISGMPALTKSS 60
           MF VT  +G CM+  DVC TP P         PN  +PMM    TTKV++ GMPALTK S
Sbjct: 1   MFVVTTASGLCMSPADVCKTPTPGGPVPVPY-PNTGLPMMAASITTKVLVCGMPALTKKS 59

Query: 61  KITMSNGDQPGVNGGVVSGKIMGPAEFIMGSMKVKLEGNPAVRMGDTTKQNDGNAVGAVL 120
            I M+NGDQPG  GG +SGKIMG  EF  GS KVKLEG+PAVR+   TK NDGNA GAVL
Sbjct: 60  TIPMTNGDQPGTAGGAMSGKIMGKVEFTAGSAKVKLEGSPAVRLTTPTKHNDGNATGAVL 119

Query: 121 VPSQVKVMIMS 131
            PSQ KVM+MS
Sbjct: 120 QPSQQKVMVMS 130