BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4707.p         (161 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777141.1| methyl-accepting chemotaxis I protein [Herba...   213   6e-54
ref|YP_003776540.1| methyl-accepting chemotaxis transducer trans...   184   3e-45
ref|YP_001098978.1| methyl-accepting chemotaxis protein [Hermini...   181   4e-44
ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herba...   179   2e-43
ref|YP_004293384.1| methyl-accepting chemotaxis sensory transduc...   174   4e-42

>ref|YP_003777141.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ65233.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae
           SmR1]
          Length = 516

 Score =  213 bits (543), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 134/137 (97%), Positives = 137/137 (100%)

Query: 1   MEAINDASNRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 60
           MEAIN+ASNRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS
Sbjct: 349 MEAINEASNRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 408

Query: 61  ASAAKEIKQLIDDSVSKVGAGTTLVRQAGSTMSEVVESVKRVTDVVSEISAASTEQSVGI 120
           ASAAKEIKQLIDDSVSKVGAGT+LVRQAGSTMSEVVESVKRVTDVVSEISAASTEQSVGI
Sbjct: 409 ASAAKEIKQLIDDSVSKVGAGTSLVRQAGSTMSEVVESVKRVTDVVSEISAASTEQSVGI 468

Query: 121 DEINRAVSQMDEVTQQN 137
           DEINRAV+QMDEVTQQN
Sbjct: 469 DEINRAVTQMDEVTQQN 485


>ref|YP_003776540.1| methyl-accepting chemotaxis transducer transmembrane protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ64632.1| methyl-accepting chemotaxis transducer transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 596

 Score =  184 bits (467), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 111/137 (81%), Positives = 126/137 (91%)

Query: 1   MEAINDASNRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 60
           M+AIND+S +IV+IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS
Sbjct: 349 MQAINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 408

Query: 61  ASAAKEIKQLIDDSVSKVGAGTTLVRQAGSTMSEVVESVKRVTDVVSEISAASTEQSVGI 120
           A+AAKEIK LIDDSV KV AG+ LV QAG+TMSEVV SV+RVTD+V EI+ AS EQS GI
Sbjct: 409 AAAAKEIKSLIDDSVEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGI 468

Query: 121 DEINRAVSQMDEVTQQN 137
           +++NRA++QMDEVTQQN
Sbjct: 469 EQVNRAITQMDEVTQQN 485


>ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans]
 emb|CAL60851.1| methyl-accepting chemotaxis protein II, probable aspartate sensor
           [Herminiimonas arsenicoxydans]
          Length = 554

 Score =  181 bits (458), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 108/137 (78%), Positives = 125/137 (91%)

Query: 1   MEAINDASNRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 60
           M+AIN ++ +IV+II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS
Sbjct: 348 MDAINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 407

Query: 61  ASAAKEIKQLIDDSVSKVGAGTTLVRQAGSTMSEVVESVKRVTDVVSEISAASTEQSVGI 120
           A+AAKEIK LIDDSV+KV AGT LV +AG+TM+EVV+SVKRVTD++SEI AAS EQS GI
Sbjct: 408 AAAAKEIKHLIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGI 467

Query: 121 DEINRAVSQMDEVTQQN 137
           +++N A+ QMDEVTQQN
Sbjct: 468 EQVNTAIVQMDEVTQQN 484


>ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ66081.1| methyl-accepting chemotaxis protein I, serine sensor receptor
           protein [Herbaspirillum seropedicae SmR1]
          Length = 516

 Score =  179 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 117/137 (85%), Positives = 128/137 (93%)

Query: 1   MEAINDASNRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 60
           ME I ++SNRI +IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS
Sbjct: 348 MEGITESSNRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 407

Query: 61  ASAAKEIKQLIDDSVSKVGAGTTLVRQAGSTMSEVVESVKRVTDVVSEISAASTEQSVGI 120
           ASAAKEIKQLIDDSV KVGAG+ LV +AG+TMSEVV SV+RVTDVV+EISAAS EQS GI
Sbjct: 408 ASAAKEIKQLIDDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGI 467

Query: 121 DEINRAVSQMDEVTQQN 137
           +EINRA++QMDEVTQQN
Sbjct: 468 EEINRAITQMDEVTQQN 484


>ref|YP_004293384.1| methyl-accepting chemotaxis sensory transducer [Nitrosomonas sp.
           AL212]
 gb|ADZ25222.1| methyl-accepting chemotaxis sensory transducer [Nitrosomonas sp.
           AL212]
          Length = 572

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 107/137 (78%), Positives = 126/137 (91%)

Query: 1   MEAINDASNRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 60
           M AIN++S +IV+IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRS
Sbjct: 346 MSAINESSKKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRS 405

Query: 61  ASAAKEIKQLIDDSVSKVGAGTTLVRQAGSTMSEVVESVKRVTDVVSEISAASTEQSVGI 120
           A+AAKEIK+LI DSV+KV  GT LV +AG+TM E+V SVKRVTD++SEISAAS EQS GI
Sbjct: 406 AAAAKEIKELISDSVAKVEDGTRLVDEAGATMDEIVTSVKRVTDIMSEISAASNEQSSGI 465

Query: 121 DEINRAVSQMDEVTQQN 137
           +++N+AV+QMDEVTQQN
Sbjct: 466 EQVNQAVTQMDEVTQQN 482