BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4706.p (491 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777138.1| RecA-superfamily ATPase [Herbaspirillum sero... 895 0.0 ref|XP_002535762.1| Circadian clock protein kinase kaiC, putativ... 553 e-155 ref|YP_004350403.1| Rad553 [Burkholderia gladioli BSR3] >gi|3273... 403 e-110 ref|YP_002909431.1| Non-specific serine/threonine protein kinase... 397 e-108 ref|YP_003910132.1| Non-specific serine/threonine protein kinase... 390 e-106 >ref|YP_003777138.1| RecA-superfamily ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ65230.1| RecA-superfamily ATPase protein [Herbaspirillum seropedicae SmR1] Length = 490 Score = 895 bits (2314), Expect = 0.0, Method: Composition-based stats. Identities = 456/491 (92%), Positives = 474/491 (96%), Gaps = 1/491 (0%) Query: 1 MSHLPQSPLPAAVATLRPSRISLISTGIAGFDEILGGGLPAGSLYLIQGLAGSGKTTLAS 60 M+ PQS LP A RPSRISL+STGIAGFDEILGGGLPAGSLYLIQGLAGSGKTTLAS Sbjct: 1 MNEQPQS-LPPAPTGGRPSRISLLSTGIAGFDEILGGGLPAGSLYLIQGLAGSGKTTLAS 59 Query: 61 QVGFAQARSGNKVMLLTLIAESHAKMLNHVSNFDFFDESLVGDQMQMLSGYGALASEGLR 120 Q+G+AQAR GN+VMLLTLIAESHAKMLNHVSNFDFFDESLVGD+MQMLSGY ALASEGLR Sbjct: 60 QIGWAQARGGNQVMLLTLIAESHAKMLNHVSNFDFFDESLVGDRMQMLSGYAALASEGLR 119 Query: 121 GLLRLISAELNRHRPAMLIIDGFRSVRDSGPSDLNLSEFMHSLNALVFTMNCTTLLLSPV 180 GLLR+ISAEL+RHRPAMLIIDGFRSVRDSGPSDLNLSEFMHSLNALVFTMNCTTLLLSPV Sbjct: 120 GLLRMISAELSRHRPAMLIIDGFRSVRDSGPSDLNLSEFMHSLNALVFTMNCTTLLLSPV 179 Query: 181 EGNMPESENTLVDGVIELSQHESGMQLEREIKVFKLRGANHLLGKHVFEINQSGVEIFPR 240 EGN+PESENTLVDGVIELSQ+ESGMQL REIKVFKLRGANHLLGKHVFEINQSGVEIFPR Sbjct: 180 EGNLPESENTLVDGVIELSQYESGMQLVREIKVFKLRGANHLLGKHVFEINQSGVEIFPR 239 Query: 241 FEATATRAGKVPGTSDRYVSVGIPSWDKCIGGGVVSGSLTCLLGSPGVGKTLMGLHFIEQ 300 FEATATRAGKVPGTSDRYVSVGIPSWDKCIGGGVVSGSLTCLLGSPGVGKTLMGLHFIEQ Sbjct: 240 FEATATRAGKVPGTSDRYVSVGIPSWDKCIGGGVVSGSLTCLLGSPGVGKTLMGLHFIEQ 299 Query: 301 GLKDGQQCLILGFYESPERLLAKARKAGMQLDEHIDSGALQVMWQLPLEMLCDDLAKRML 360 GLKDGQQCLILGFYESPERLLAKARKAGMQLD HIDSGALQVMWQLPLEMLCDDLAKRML Sbjct: 300 GLKDGQQCLILGFYESPERLLAKARKAGMQLDAHIDSGALQVMWQLPLEMLCDDLAKRML 359 Query: 361 DNIARRGVTRLLIDGVDGLRSIVVQQQRMRPFLVALTNELRARGVTTFITEQLPYFRESQ 420 D+IARRGVTRLLIDGVDGLRSIVVQ QRMRPFLVALTNELRARGVTTFITEQLPYFRES+ Sbjct: 360 DDIARRGVTRLLIDGVDGLRSIVVQPQRMRPFLVALTNELRARGVTTFITEQLPYFRESR 419 Query: 421 PQVDPNSSQLYENMMLLEYVVKDSVNRRQISVMKLRENGYDGASRLMNISDAGIEIDGLV 480 PQVDP+SSQLYENMMLLEYVVKD VNRRQI+VMKLRENGYDGA+RLMNISDAGIEIDGLV Sbjct: 420 PQVDPSSSQLYENMMLLEYVVKDDVNRRQIAVMKLRENGYDGAARLMNISDAGIEIDGLV 479 Query: 481 TPLAAPVADGR 491 +P + P+ DGR Sbjct: 480 SPASTPLVDGR 490 >ref|XP_002535762.1| Circadian clock protein kinase kaiC, putative [Ricinus communis] gb|EEF26619.1| Circadian clock protein kinase kaiC, putative [Ricinus communis] Length = 287 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 272/287 (94%), Positives = 280/287 (97%) Query: 205 MQLEREIKVFKLRGANHLLGKHVFEINQSGVEIFPRFEATATRAGKVPGTSDRYVSVGIP 264 MQL REIKVFKLRGANHLLGKHVFEINQSGVEIFPRFEATATRAGKVPGTSDRYVSVGIP Sbjct: 1 MQLVREIKVFKLRGANHLLGKHVFEINQSGVEIFPRFEATATRAGKVPGTSDRYVSVGIP 60 Query: 265 SWDKCIGGGVVSGSLTCLLGSPGVGKTLMGLHFIEQGLKDGQQCLILGFYESPERLLAKA 324 SWDKCIGGGVVSGSLTCLLGSPGVGKTLMGLHFIEQGLKDGQQCLILGFYESPERLLAKA Sbjct: 61 SWDKCIGGGVVSGSLTCLLGSPGVGKTLMGLHFIEQGLKDGQQCLILGFYESPERLLAKA 120 Query: 325 RKAGMQLDEHIDSGALQVMWQLPLEMLCDDLAKRMLDNIARRGVTRLLIDGVDGLRSIVV 384 RKAGMQLD HIDSGALQVMWQLPLEMLCDDLAKRMLD+IARRGVTRLLIDGVDGLRSIVV Sbjct: 121 RKAGMQLDAHIDSGALQVMWQLPLEMLCDDLAKRMLDDIARRGVTRLLIDGVDGLRSIVV 180 Query: 385 QQQRMRPFLVALTNELRARGVTTFITEQLPYFRESQPQVDPNSSQLYENMMLLEYVVKDS 444 Q QRMRPFLVALTNELRARGVTTFITEQLPYFRES+PQVDP+SSQLYENMMLLEYVVKD Sbjct: 181 QPQRMRPFLVALTNELRARGVTTFITEQLPYFRESRPQVDPSSSQLYENMMLLEYVVKDD 240 Query: 445 VNRRQISVMKLRENGYDGASRLMNISDAGIEIDGLVTPLAAPVADGR 491 VNRRQI+VMKLRENGYDGA+RLMNISDAGIEIDGLV+P + P+ DGR Sbjct: 241 VNRRQIAVMKLRENGYDGAARLMNISDAGIEIDGLVSPASTPLVDGR 287 >ref|YP_004350403.1| Rad553 [Burkholderia gladioli BSR3] gb|AEA64891.1| Rad553 [Burkholderia gladioli BSR3] Length = 507 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 221/482 (45%), Positives = 303/482 (62%), Gaps = 18/482 (3%) Query: 24 ISTGIAGFDEILGGGLPAGSLYLIQGLAGSGKTTLASQVGFAQARSGNKVMLLTLIAESH 83 + TG+ G DEILGGG G LYLI+G+AG+GKT L+SQ+GF + R G +V+ +TLIAESH Sbjct: 29 VETGVPGLDEILGGGFVRGGLYLIEGMAGAGKTILSSQIGFHRVRQGERVLYMTLIAESH 88 Query: 84 AKMLNHVSNFDFFDESLVGDQMQMLSGYGALASEGLRGLLRLISAELNRHRPAMLIIDGF 143 K+L H+ +FFD+S V Q+ SGY L +GL G L+LI+A L HRP +LIIDGF Sbjct: 89 DKLLGHLRGLEFFDQSAVAQQLMFESGYHELMRDGLDGFLKLIAASLANHRPGLLIIDGF 148 Query: 144 RSVRDSGPSDLNLSEFMHSLNALVFTMNCTTLLLSPVEGNMPESENTLVDGVIELSQHES 203 RS R+ ++L+LS+F+H LNALV M+CTTLLL+P+ GN P E+TLVDG+IEL+++ Sbjct: 149 RSAREFSETELSLSKFIHELNALVAAMDCTTLLLAPLSGNEPHPEHTLVDGLIELNRYSD 208 Query: 204 GMQLEREIKVFKLRGANHLLGKHVFEINQSGVEIFPRFEATATRAGKVPGTSD--RYVSV 261 GM+ REI+V K+R NHLLGKH F I SG ++PR EA R + D + + Sbjct: 209 GMRRAREIEVHKMRARNHLLGKHFFRITASGHAMYPRLEA---RYANLEDERDLRQRLDT 265 Query: 262 GIPSWDKCIGGGVVSGSLTCLLGSPGVGKTLMGLHFIEQGLKDGQQCLILGFYESPERLL 321 G+P D IGGG V GS T ++G GVGKTL+ L F++ G+ G++ + LGFYESP+RL+ Sbjct: 266 GLPHLDHLIGGGFVRGSTTTVIGPAGVGKTLLALQFLQAGIARGEKVVYLGFYESPQRLI 325 Query: 322 AKARKAGMQLDEHIDSGALQVMWQLPLEMLCDDLAKRMLDNIARRGVTRLLIDGVDGLRS 381 KA G+ L E G L + WQ +E+ D+LA L I R G +RL+IDG++G R Sbjct: 326 GKAEAVGILLREGFADGRLTMQWQPAVELEVDELAATTLALIRRLGASRLVIDGMEGFRD 385 Query: 382 IVVQQQRMRPFLVALTNELRARGVTTFITEQLPYFRESQPQVDPNSSQLYENMMLLEYVV 441 ++ R FL A T+ LR GVTT +TE+LP + + S L EN++LL YV Sbjct: 386 SALRPARFGLFLNAFTHALRDSGVTTMLTEELPLYADPSHGKGMRLSALTENLILLRYVE 445 Query: 442 KDSVNRRQISVMKLRENGYDGASRLMNISDAGIE-------------IDGLVTPLAAPVA 488 D RR +SV+K RE+ +D + R + I G++ + GL T L P+ Sbjct: 446 ADGRLRRMVSVVKQRESAHDTSLRELVIKSDGLDVTPNAIGAAGLLSVQGLTTMLHRPMT 505 Query: 489 DG 490 DG Sbjct: 506 DG 507 >ref|YP_002909431.1| Non-specific serine/threonine protein kinase [Burkholderia glumae BGR1] gb|ACR32196.1| Non-specific serine/threonine protein kinase [Burkholderia glumae BGR1] Length = 499 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 212/478 (44%), Positives = 306/478 (64%), Gaps = 7/478 (1%) Query: 1 MSHLPQSPLPAAVATLRPSRISLISTGIAGFDEILGGGLPAGSLYLIQGLAGSGKTTLAS 60 M+ +P A++ + P + ++TG+ G DEILGGG G LYLI+G+AG+GKT L+S Sbjct: 1 MTQDDSAPHAPALSDIEP--LENVATGVPGLDEILGGGFVRGGLYLIEGMAGAGKTILSS 58 Query: 61 QVGFAQARSGNKVMLLTLIAESHAKMLNHVSNFDFFDESLVGDQMQMLSGYGALASEGLR 120 Q+GF + R G +V+ +TLIAESH K+L H+ DFFD + V +M +SGY L +GL Sbjct: 59 QIGFHRVRQGERVLYMTLIAESHDKLLGHLRELDFFDPAAVAQKMMFVSGYHELIEDGLD 118 Query: 121 GLLRLISAELNRHRPAMLIIDGFRSVRDSGPSDLNLSEFMHSLNALVFTMNCTTLLLSPV 180 G LRLI+A L +RP +LI+DGFRS R+ ++L+LS+F+H LNALV M CTTLLL+P+ Sbjct: 119 GFLRLIAASLANYRPGLLIVDGFRSAREFSETELSLSKFIHELNALVAAMGCTTLLLAPL 178 Query: 181 EGNMPESENTLVDGVIELSQHESGMQLEREIKVFKLRGANHLLGKHVFEINQSGVEIFPR 240 GN P E+TLVDG+IEL+++ GM+ REI+V K+R NHLLG+H F I SG ++PR Sbjct: 179 SGNEPHPEHTLVDGLIELNRYTDGMRRAREIEVHKMRARNHLLGRHFFRITSSGHAMYPR 238 Query: 241 FEATATRAGKVPGTSD--RYVSVGIPSWDKCIGGGVVSGSLTCLLGSPGVGKTLMGLHFI 298 EA R + D + + G+P D+ +GGG V GS T ++G GVGKTL+ L F+ Sbjct: 239 LEA---RFANLEDERDLRQRLDTGLPHLDQLLGGGFVRGSTTTVMGPSGVGKTLLALQFL 295 Query: 299 EQGLKDGQQCLILGFYESPERLLAKARKAGMQLDEHIDSGALQVMWQLPLEMLCDDLAKR 358 + G+ G++ + LGFYESP+RL+ KA G++L E G L + WQ +E+ D+LA Sbjct: 296 QAGVARGEKAVYLGFYESPQRLIGKAETVGIRLREAFADGRLAMQWQPAVELEVDELAAN 355 Query: 359 MLDNIARRGVTRLLIDGVDGLRSIVVQQQRMRPFLVALTNELRARGVTTFITEQLPYFRE 418 L I R G +RL+IDG++G R ++ R FL A + LR G+TT +TE+LP + + Sbjct: 356 TLALIQRLGASRLVIDGMEGFRDSALRPARFGLFLNAFNHALRDAGITTLLTEELPLYAD 415 Query: 419 SQPQVDPNSSQLYENMMLLEYVVKDSVNRRQISVMKLRENGYDGASRLMNISDAGIEI 476 S L EN++LL Y D RR +SV+K RE+ +D + R + I+ G+++ Sbjct: 416 PSHGKGLRLSALTENLVLLRYAETDGRLRRMLSVVKQRESAHDTSLRELIITPEGLDV 473 >ref|YP_003910132.1| Non-specific serine/threonine protein kinase [Burkholderia sp. CCGE1003] gb|ADN60841.1| Non-specific serine/threonine protein kinase [Burkholderia sp. CCGE1003] Length = 488 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 210/467 (44%), Positives = 304/467 (65%), Gaps = 1/467 (0%) Query: 24 ISTGIAGFDEILGGGLPAGSLYLIQGLAGSGKTTLASQVGFAQARSGNKVMLLTLIAESH 83 + TG+ G DEILGGGL G +YL++G+AG+GKT L+SQ+GF + G KV+ +TLIAESH Sbjct: 12 VETGVPGLDEILGGGLVQGGVYLLEGMAGAGKTILSSQIGFHRVSRGEKVLYMTLIAESH 71 Query: 84 AKMLNHVSNFDFFDESLVGDQMQMLSGYGALASEGLRGLLRLISAELNRHRPAMLIIDGF 143 K+L H+ FFDE V QM +SGY L +GL G L+LI++ + +RP+++IIDGF Sbjct: 72 DKLLAHLKGLSFFDEKAVAQQMLFVSGYHELMQDGLDGFLKLIASSIYDYRPSLMIIDGF 131 Query: 144 RSVRDSGPSDLNLSEFMHSLNALVFTMNCTTLLLSPVEGNMPESENTLVDGVIELSQHES 203 RS R+ ++L+LS+F+H LNALV MNCTTLLL+P+ GN P E+TLVDG+IEL+++ Sbjct: 132 RSAREFSETELSLSKFIHELNALVAAMNCTTLLLAPLSGNEPHPEHTLVDGLIELNRYSD 191 Query: 204 GMQLEREIKVFKLRGANHLLGKHVFEINQSGVEIFPRFEATATRAGKVPGTSDRYVSVGI 263 GM+ REI+V K+R NHL+GKH F I +SG+ ++PR EA A + P VS G+ Sbjct: 192 GMRRAREIEVHKMRARNHLMGKHFFRIAESGLLMYPRLEAQPA-AARGPVDLKTRVSFGL 250 Query: 264 PSWDKCIGGGVVSGSLTCLLGSPGVGKTLMGLHFIEQGLKDGQQCLILGFYESPERLLAK 323 P D GGG+ GS T ++G GVGKTL+ L F+ G++ G++CL LGFYE P+RL+ K Sbjct: 251 PRLDAMFGGGLSLGSTTTMIGPSGVGKTLLCLQFLAAGIERGERCLYLGFYEGPQRLIGK 310 Query: 324 ARKAGMQLDEHIDSGALQVMWQLPLEMLCDDLAKRMLDNIARRGVTRLLIDGVDGLRSIV 383 A + LDE G L + WQ +E+ D++A L + G TR++IDGV+G R Sbjct: 311 AEAVSIGLDEAYRDGRLVIQWQPAVELAIDEIAANALATAKQMGATRVVIDGVEGFRDSA 370 Query: 384 VQQQRMRPFLVALTNELRARGVTTFITEQLPYFRESQPQVDPNSSQLYENMMLLEYVVKD 443 ++ +R FL A+ ++LR G+TT +TE++ + + S L EN++LL Y D Sbjct: 371 LRIERFGLFLNAMLHQLREAGITTLVTEEVALYPDYGQSRSTRVSALTENLVLLRYAETD 430 Query: 444 SVNRRQISVMKLRENGYDGASRLMNISDAGIEIDGLVTPLAAPVADG 490 + RR IS++K RE+ +D ++R + IS G++I +T L+ A G Sbjct: 431 AGARRAISIVKQRESAHDPSTRELVISSQGLDIVESLTGLSVSSASG 477