BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4705.p         (131 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777137.1| two component sensor histidine kinase [Herba...   206   8e-52
ref|XP_002535763.1| two-component system sensor histidine kinase...   202   1e-50
ref|YP_554814.1| response regulator receiver domain-containing p...    99   3e-19
ref|ZP_02881859.1| response regulator receiver protein [Burkhold...    98   5e-19
ref|YP_003910131.1| response regulator receiver protein [Burkhol...    97   7e-19

>ref|YP_003777137.1| two component sensor histidine kinase [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ65229.1| two component sensor histidine kinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 120

 Score =  206 bits (525), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 102/120 (85%), Positives = 111/120 (92%)

Query: 12  LPLLLIVDDEIDITDTYAMLLELHGYRVVTAVHGADALTKAQQAWPDLVISDCMMPVMNG 71
           +PLLLIVDDE+DITDTY+MLLELHGYRV+TA HGADAL KA+Q WPDLVISDCMMPVMNG
Sbjct: 1   MPLLLIVDDEVDITDTYSMLLELHGYRVITACHGADALDKARQHWPDLVISDCMMPVMNG 60

Query: 72  LELCAALRALPGGATLPIILCSGAPERHDLSQSSHNLFLRKPVFFEQMLAEIQRLLTARP 131
           LELCAALR LPGGA LP+ILCSGAPERHDLSQSSHNLFLRKPVFF+++L EI RLL  RP
Sbjct: 61  LELCAALRRLPGGAQLPVILCSGAPERHDLSQSSHNLFLRKPVFFDRLLEEIGRLLPGRP 120


>ref|XP_002535763.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
 gb|EEF26620.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
          Length = 131

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 110/131 (83%), Positives = 118/131 (90%)

Query: 1   MSGASPPQQAALPLLLIVDDEIDITDTYAMLLELHGYRVVTAVHGADALTKAQQAWPDLV 60
           MS AS   QAALPLLLIVDDE+DITDTY+MLLELHGYRV+TA HGADAL KA+Q WPDLV
Sbjct: 1   MSTASALPQAALPLLLIVDDEVDITDTYSMLLELHGYRVITACHGADALDKARQHWPDLV 60

Query: 61  ISDCMMPVMNGLELCAALRALPGGATLPIILCSGAPERHDLSQSSHNLFLRKPVFFEQML 120
           ISDCMMPVMNGLELCAALR LPGGA LP+ILCSGAPERHDLSQSSHNLFLRKPVFF+++L
Sbjct: 61  ISDCMMPVMNGLELCAALRRLPGGAQLPVILCSGAPERHDLSQSSHNLFLRKPVFFDRLL 120

Query: 121 AEIQRLLTARP 131
            EI RLL  RP
Sbjct: 121 EEIGRLLPGRP 131


>ref|YP_554814.1| response regulator receiver domain-containing protein [Burkholderia
           xenovorans LB400]
 gb|ABE35464.1| Response regulator receiver domain protein(CheY) [Burkholderia
           xenovorans LB400]
          Length = 116

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/112 (48%), Positives = 78/112 (69%), Gaps = 1/112 (0%)

Query: 15  LLIVDDEIDITDTYAMLLELHGYRVVTAVHGADALTKAQQAWPDLVISDCMMPVMNGLEL 74
           +L+VDDE DI   + +LLE HGY V+ A +GA AL + ++  PD+++SDCMMPVM+GL+L
Sbjct: 4   ILVVDDEFDILTVWRLLLERHGYTVLIASNGAAALEQIRKTRPDIIVSDCMMPVMSGLQL 63

Query: 75  CAALRALPGGATLPIILCSGAPERHDLSQSSHNLFLRKPVFFEQMLAEIQRL 126
           CAAL A P   T+PIILCS A +   +  +    + RKP+ F+ +LA +QR+
Sbjct: 64  CAALNADPDLRTIPIILCSAAADI-PVQPNPTIEYARKPLSFDTLLAMLQRM 114


>ref|ZP_02881859.1| response regulator receiver protein [Burkholderia graminis C4D1M]
 gb|EDT12104.1| response regulator receiver protein [Burkholderia graminis C4D1M]
          Length = 116

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 1/112 (0%)

Query: 15  LLIVDDEIDITDTYAMLLELHGYRVVTAVHGADALTKAQQAWPDLVISDCMMPVMNGLEL 74
           +L+VDDE DI   + +LLE HGY V+TA +GA AL + ++  PD+++SDCMMPVM+GL+L
Sbjct: 4   ILVVDDEFDILTVWRLLLERHGYTVLTASNGAVALEQIRRTRPDIIVSDCMMPVMSGLQL 63

Query: 75  CAALRALPGGATLPIILCSGAPERHDLSQSSHNLFLRKPVFFEQMLAEIQRL 126
           CAAL A P    +PIILCS A +       S   + RKP+ F+ +LA ++R+
Sbjct: 64  CAALYADPELRDIPIILCSAAADIPVQPNPSIE-YARKPIAFDALLAMLKRM 114


>ref|YP_003910131.1| response regulator receiver protein [Burkholderia sp. CCGE1003]
 gb|ADN60840.1| response regulator receiver protein [Burkholderia sp. CCGE1003]
          Length = 116

 Score = 97.4 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 52/112 (46%), Positives = 78/112 (69%), Gaps = 1/112 (0%)

Query: 15  LLIVDDEIDITDTYAMLLELHGYRVVTAVHGADALTKAQQAWPDLVISDCMMPVMNGLEL 74
           +L+ DDE DI   + +LLE HGY V+TA +GA AL + ++  PD+++SDCMMPVM+GL+L
Sbjct: 4   ILVADDEFDILTVWRLLLERHGYTVLTASNGAVALEQIRRTKPDIIVSDCMMPVMSGLQL 63

Query: 75  CAALRALPGGATLPIILCSGAPERHDLSQSSHNLFLRKPVFFEQMLAEIQRL 126
           CAAL A P   T+P+ILCS A +   +  +    + RKP+ F+ +LA +Q++
Sbjct: 64  CAALYADPELRTIPVILCSAAADI-PVQPNPFIAYARKPIAFDALLALLQKM 114