BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4704.p         (126 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777136.1| two component response regulator protein [He...   164   4e-39
ref|ZP_08795359.1| two-component system sensor histidine kinase/...    89   2e-16
ref|ZP_06089451.1| two-component system sensor histidine kinase/...    89   2e-16
ref|ZP_04540111.1| two-component system sensor histidine kinase/...    89   2e-16
ref|ZP_03298723.1| hypothetical protein BACDOR_00081 [Bacteroide...    89   2e-16

>ref|YP_003777136.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65228.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 122

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 88/113 (77%), Positives = 99/113 (87%)

Query: 1   MVVEDHPESREMLCGILQQGGLQVVAAADGVDAIAQMQEQAPSLVLTDLRMPRMDGMELA 60
           +VVEDHP+SR++LC IL   GL V+AA+DGV+AIA MQ QAPSLVLTDLRMPRMDGMELA
Sbjct: 10  LVVEDHPDSRDLLCEILAHKGLSVMAASDGVEAIALMQSQAPSLVLTDLRMPRMDGMELA 69

Query: 61  RYIKSHERFSPIPVVLISAHLPAASARIPTIAAFLLKPCSVDHLLGTVTGLLR 113
           RYIKS ERF  IPV LISA+LPAA+AR+P I+AFLLKPCSVDHLL TVT LLR
Sbjct: 70  RYIKSDERFGHIPVALISANLPAANARVPEISAFLLKPCSVDHLLTTVTQLLR 122


>ref|ZP_08795359.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
 gb|EEO46569.2| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1440

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 6/126 (4%)

Query: 1    MVVEDHPESREMLCGILQQGGLQVVAAADGVDAIAQMQEQAPSLVLTDLRMPRMDGMELA 60
            MVVED+ E R+ +C IL  G  +VV  ADGV A+ +++E+ P  ++TD+ MPRMDG+EL 
Sbjct: 1186 MVVEDNAELRQFICEILS-GTYRVVGVADGVMALEEIEEEVPDFIITDIMMPRMDGIELI 1244

Query: 61   RYIKSHERFSPIPVVLISAHLPAASARIP----TIAAFLLKPCSVDHLLGTVTGLLRQHA 116
            R+IK +     IP++++SA   +   RI      I  ++ KP S D+L   +  L+RQ  
Sbjct: 1245 RHIKENVNTCDIPIIILSAK-SSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQRK 1303

Query: 117  QSQAQW 122
              Q+ +
Sbjct: 1304 VLQSAF 1309


>ref|ZP_06089451.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gb|EEZ20526.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1446

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 6/126 (4%)

Query: 1    MVVEDHPESREMLCGILQQGGLQVVAAADGVDAIAQMQEQAPSLVLTDLRMPRMDGMELA 60
            MVVED+ E R+ +C IL  G  +VV  ADGV A+ +++E+ P  ++TD+ MPRMDG+EL 
Sbjct: 1192 MVVEDNAELRQFICEILS-GTYRVVGVADGVMALEEIEEEVPDFIITDIMMPRMDGIELI 1250

Query: 61   RYIKSHERFSPIPVVLISAHLPAASARIP----TIAAFLLKPCSVDHLLGTVTGLLRQHA 116
            R+IK +     IP++++SA   +   RI      I  ++ KP S D+L   +  L+RQ  
Sbjct: 1251 RHIKENVNTCDIPIIILSAK-SSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQRK 1309

Query: 117  QSQAQW 122
              Q+ +
Sbjct: 1310 VLQSAF 1315


>ref|ZP_04540111.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gb|EEO61987.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
          Length = 1446

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 6/126 (4%)

Query: 1    MVVEDHPESREMLCGILQQGGLQVVAAADGVDAIAQMQEQAPSLVLTDLRMPRMDGMELA 60
            MVVED+ E R+ +C IL  G  +VV  ADGV A+ +++E+ P  ++TD+ MPRMDG+EL 
Sbjct: 1192 MVVEDNAELRQFICEILS-GTYRVVGVADGVMALEEIEEEVPDFIITDIMMPRMDGIELI 1250

Query: 61   RYIKSHERFSPIPVVLISAHLPAASARIP----TIAAFLLKPCSVDHLLGTVTGLLRQHA 116
            R+IK +     IP++++SA   +   RI      I  ++ KP S D+L   +  L+RQ  
Sbjct: 1251 RHIKENVNTCDIPIIILSAK-SSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQRK 1309

Query: 117  QSQAQW 122
              Q+ +
Sbjct: 1310 VLQSAF 1315


>ref|ZP_03298723.1| hypothetical protein BACDOR_00081 [Bacteroides dorei DSM 17855]
 gb|EEB27413.1| hypothetical protein BACDOR_00081 [Bacteroides dorei DSM 17855]
          Length = 1440

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/124 (39%), Positives = 75/124 (60%), Gaps = 6/124 (4%)

Query: 1    MVVEDHPESREMLCGILQQGGLQVVAAADGVDAIAQMQEQAPSLVLTDLRMPRMDGMELA 60
            MVVED+ E R+ +C IL  G  +VV  ADGV A+ +++E+ P  ++TD+ MPRMDG+EL 
Sbjct: 1186 MVVEDNAELRQFICEILS-GTYRVVGVADGVMALEEIEEEVPDFIITDIMMPRMDGIELI 1244

Query: 61   RYIKSHERFSPIPVVLISAHLPAASARIP----TIAAFLLKPCSVDHLLGTVTGLLRQHA 116
            R+IK +     IP++++SA   +   RI      I  ++ KP S D+L   +  L+RQ  
Sbjct: 1245 RHIKENVNTCDIPIIILSAK-SSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQRK 1303

Query: 117  QSQA 120
              Q+
Sbjct: 1304 VLQS 1307