BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4703.p (272 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777135.1| two component response regulator protein [He... 415 e-114 gb|EGP48173.1| two component response regulator protein [Achromo... 189 5e-46 gb|EFV84176.1| hypothetical protein HMPREF0005_02918 [Achromobac... 187 1e-45 ref|YP_003979313.1| response regulator 9 [Achromobacter xylosoxi... 163 2e-38 gb|EGP43761.1| response regulator 9 [Achromobacter xylosoxidans ... 158 1e-36 >ref|YP_003777135.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65227.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 236 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 208/235 (88%), Positives = 225/235 (95%) Query: 37 MKVLIVESDLDWRNTLSAHVGELGYEISVCSALGQARDILKSRQPDILLSDIGLPDGSLL 96 MKVLIVESDLDWRN+LSAH+G+LGYE SVC+ LGQAR++L+ RQPDILL+D+GLPDGSLL Sbjct: 1 MKVLIVESDLDWRNSLSAHMGDLGYETSVCATLGQAREVLRGRQPDILLTDVGLPDGSLL 60 Query: 97 PELASLRQNFPSMGIIILTAATRSEERVRCMSDGADYYLVKPVKLEEVSATLTALARRMK 156 PELASLRQ+FPSMGI++LTAA R EER+RCMSDGADYYL +PVKLEEVSATLTALARRMK Sbjct: 61 PELASLRQHFPSMGIVVLTAAQRMEERIRCMSDGADYYLARPVKLEEVSATLTALARRMK 120 Query: 157 TAPHQSSPQSEKWAFNRRSGRLSSNGSVALQFTDKESTALAALLQSPNYPVSHAQLFDLL 216 T PHQSSPQSEKWAFNRRSGRLSSNG ALQFTDKESTALAALLQSPNYPVSH QLFDLL Sbjct: 121 TVPHQSSPQSEKWAFNRRSGRLSSNGVTALQFTDKESTALAALLQSPNYPVSHGQLFDLL 180 Query: 217 RSGGEEYDAHRIDALIYRVRQKLRSLEEAPMQIRNIYGEGFLMLRRSSAVDIVLE 271 RSGGEEYDAHRIDALIYRVRQKLRSLEE+PMQIRNIYGEGFLMLRR+S+VDIVLE Sbjct: 181 RSGGEEYDAHRIDALIYRVRQKLRSLEESPMQIRNIYGEGFLMLRRNSSVDIVLE 235 >gb|EGP48173.1| two component response regulator protein [Achromobacter xylosoxidans AXX-A] Length = 235 Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 102/235 (43%), Positives = 151/235 (64%), Gaps = 3/235 (1%) Query: 37 MKVLIVESDLDWRNTLSAHVGELGYEISVCSALGQARDILKSRQPDILLSDIGLPDGSLL 96 M+VL+VE W ++S+H+ LG + VC L A ++ P IL++ LPDG +L Sbjct: 1 MRVLVVEDPPQWAESVSSHIAGLGRGVRVCGTLQDALAHIRQDPPGILVTAASLPDGDML 60 Query: 97 PELASLRQNFPSMGIIILTAATRSEERVRCMSDGADYYLVKPVKLEEVSATLTALARRMK 156 +A+LR+ FP+MGII+LT R +++ +SDGAD+YL+KP++L ++AT++AL RR+ Sbjct: 61 DHIAALRRAFPAMGIIVLTDNVRMPAQLQSLSDGADHYLIKPIQLALLAATVSALERRLV 120 Query: 157 TAPHQSSPQSE-KWAFNRRSGRLSSNGSVALQFTDKESTALAALLQSPNYPVSHAQLFDL 215 TA P S W + ++ +L S+ L T KES +A L+QSP +PVSH ++ + Sbjct: 121 TA--TPGPVSRGHWTLDVQARQLRSSNGEQLSLTAKESIVMATLIQSPKFPVSHKRMSQI 178 Query: 216 LRSGGEEYDAHRIDALIYRVRQKLRSLEEAPMQIRNIYGEGFLMLRRSSAVDIVL 270 L YD HRIDAL+YRVR+KL +L +APMQIRNIY EG L++ R S + I + Sbjct: 179 LGYPEVIYDQHRIDALLYRVRKKLATLRDAPMQIRNIYSEGSLLVMRESMIRIAM 233 >gb|EFV84176.1| hypothetical protein HMPREF0005_02918 [Achromobacter xylosoxidans C54] Length = 235 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 97/236 (41%), Positives = 149/236 (63%), Gaps = 1/236 (0%) Query: 37 MKVLIVESDLDWRNTLSAHVGELGYEISVCSALGQARDILKSRQPDILLSDIGLPDGSLL 96 M++L+VE +W +T+S H+ LG+ + C L A D ++ R P+IL++ LPDG +L Sbjct: 1 MRILVVEDPPEWADTVSRHIAGLGHAVHTCGGLRDALDHIRQRAPEILVTGTPLPDGDML 60 Query: 97 PELASLRQNFPSMGIIILTAATRSEERVRCMSDGADYYLVKPVKLEEVSATLTALARRMK 156 +A+L + FP+MGI++L A+ R ++R MSDG D+YL KPV+L ++ TL+AL RR+ Sbjct: 61 AHIAALHRTFPAMGIVVLAASPRINTQLRGMSDGVDHYLNKPVQLPLLAVTLSALERRLV 120 Query: 157 TAPHQSSPQSEKWAFNRRSGRLSSNGSVALQFTDKESTALAALLQSPNYPVSHAQLFDLL 216 T+ S + W + S L S+ + T KE+ LA+L+QSP +P+SH ++ +L Sbjct: 121 TSSAAPS-RDGAWTLDVESRELRSSDGQQVDLTAKEAIVLASLIQSPKFPISHERMSQIL 179 Query: 217 RSGGEEYDAHRIDALIYRVRQKLRSLEEAPMQIRNIYGEGFLMLRRSSAVDIVLES 272 +D HRIDAL+YRVR+KL ++ PMQIRNIY EG L++ R V I ++ Sbjct: 180 GYPEIIFDKHRIDALLYRVRKKLGTIRGTPMQIRNIYAEGSLLVVRDITVSIAAQA 235 >ref|YP_003979313.1| response regulator 9 [Achromobacter xylosoxidans A8] gb|ADP16598.1| response regulator 9 [Achromobacter xylosoxidans A8] Length = 239 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 90/226 (39%), Positives = 140/226 (61%), Gaps = 4/226 (1%) Query: 37 MKVLIVESDLDWRNTLSAHVGELGYEISVCSA--LGQARDILKSRQPDILLSDIGLPDGS 94 M ++IV+ DWR+T++ ++ +LG + S+ +A L + +L + P IL+ D LPDG Sbjct: 1 MTIIIVDDHGDWRDTIAEYIEDLGLDRSILTAGSLAELDQLLLTVTPGILVLDAMLPDGD 60 Query: 95 LLPELASLRQNFPSMGIIILTAATRSEERVRCMSDGADYYLVKPVKLEEVSATLTALARR 154 L ++ LR +FPSMGII+LT SE++V +S GAD+YL KPV L E+ ATL +L+RR Sbjct: 61 ALTRVSHLRTSFPSMGIIMLTGRLLSEDKVSGLSLGADHYLTKPVNLAELGATLVSLSRR 120 Query: 155 MKTAP--HQSSPQSEKWAFNRRSGRLSSNGSVALQFTDKESTALAALLQSPNYPVSHAQL 212 ++ P +P+S+ W F+ L S V + TD ES + AL+Q+ P+S +L Sbjct: 121 LRVVPAGDADAPESDAWRFDPARRTLMSPQQVCVDITDTESRLIGALIQAAPLPLSRDRL 180 Query: 213 FDLLRSGGEEYDAHRIDALIYRVRQKLRSLEEAPMQIRNIYGEGFL 258 + L + E YD HR+DA ++R+R+KLR+ M IR +YG G++ Sbjct: 181 IEALGASVEAYDTHRLDAHMHRLRRKLRAHAGGDMGIRTVYGVGYV 226 >gb|EGP43761.1| response regulator 9 [Achromobacter xylosoxidans AXX-A] Length = 239 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 137/226 (60%), Gaps = 4/226 (1%) Query: 37 MKVLIVESDLDWRNTLSAHVGELGYEISVCSA--LGQARDILKSRQPDILLSDIGLPDGS 94 M ++IV+ DWR+T++ + +LG ++ +A L + +L S P IL+ D LPDG Sbjct: 1 MTIIIVDDHGDWRDTIAEFIHDLGLGEAILTAGSLSELDQLLLSVTPGILVLDAMLPDGD 60 Query: 95 LLPELASLRQNFPSMGIIILTAATRSEERVRCMSDGADYYLVKPVKLEEVSATLTALARR 154 L ++ LR +PSMGII+LT SE++V +S GAD+YL KPV L E+ ATL +L+RR Sbjct: 61 GLARVSHLRTTYPSMGIIMLTGRLLSEDKVSGLSLGADHYLTKPVNLAELGATLVSLSRR 120 Query: 155 MKTAPHQS--SPQSEKWAFNRRSGRLSSNGSVALQFTDKESTALAALLQSPNYPVSHAQL 212 ++ P S +P +E W F+ L S + + TD ES + AL+Q+ P+S +L Sbjct: 121 LRVVPAASPEAPSAEIWRFDPARRMLVSPKRIHVDITDTESRLIGALIQAAPLPLSRGRL 180 Query: 213 FDLLRSGGEEYDAHRIDALIYRVRQKLRSLEEAPMQIRNIYGEGFL 258 + L + E YD HR+DA ++R+R+KLR+ M IR +YG G++ Sbjct: 181 VEALGASAEAYDTHRLDAHMHRLRRKLRAQAGGDMGIRTVYGVGYV 226