BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4698.p         (119 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777130.1| two component response regulator protein [He...   214   3e-54
ref|NP_760564.1| chitin catabolic cascade sensor histidine kinas...    59   2e-07
ref|NP_935526.1| sensory box sensor histidine kinase/response re...    59   2e-07
ref|ZP_02003366.1| two-component hybrid sensor and regulator [Be...    59   3e-07
ref|ZP_01311862.1| two component transcriptional regulator, wing...    57   8e-07

>ref|YP_003777130.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65222.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 119

 Score =  214 bits (545), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 112/119 (94%), Positives = 117/119 (98%)

Query: 1   MHKTALIATTQPEVSRALTEWLAINDIDIQIASSGNDAIEHIALDRPDVVLAQLAMEGMS 60
           MHKTALIAT QPEVSRALTEWLAINDIDIQIAS+G+DAIEHIALDRPDVVLAQLAMEGMS
Sbjct: 1   MHKTALIATAQPEVSRALTEWLAINDIDIQIASNGSDAIEHIALDRPDVVLAQLAMEGMS 60

Query: 61  GLRLAHYLKAQEQLADVPVILLCRDEREMDLVKGKWPAFLCAGSLHPALISELKRELVN 119
           GLRLAHYLKAQ+QLADVPVILLCRDEREMDLVKG+WPAFLC G+LHPALISELKRELVN
Sbjct: 61  GLRLAHYLKAQKQLADVPVILLCRDEREMDLVKGQWPAFLCGGALHPALISELKRELVN 119


>ref|NP_760564.1| chitin catabolic cascade sensor histidine kinase chiS [Vibrio
           vulnificus CMCP6]
 gb|AAO10091.1| Chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           vulnificus CMCP6]
          Length = 1129

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 51/89 (57%)

Query: 6   LIATTQPEVSRALTEWLAINDIDIQIASSGNDAIEHIALDRPDVVLAQLAMEGMSGLRLA 65
           ++A  +P   R L  +L I    +Q AS G D +E I  ++P ++L  + M GMSG ++ 
Sbjct: 726 IVADDEPVNLRVLESFLRIEGYRVQTASDGPDTLELIEHEKPALLLLDIMMPGMSGYQVC 785

Query: 66  HYLKAQEQLADVPVILLCRDEREMDLVKG 94
           H L+ Q  +A++P+I+L    +  D V+G
Sbjct: 786 HQLRQQYDMAELPIIMLTALSQSEDRVRG 814


>ref|NP_935526.1| sensory box sensor histidine kinase/response regulator [Vibrio
           vulnificus YJ016]
 ref|YP_004187796.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           vulnificus MO6-24/O]
 dbj|BAC95497.1| sensory box sensor histidine kinase/response regulator [Vibrio
           vulnificus YJ016]
 gb|ADV85593.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           vulnificus MO6-24/O]
          Length = 1129

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 51/89 (57%)

Query: 6   LIATTQPEVSRALTEWLAINDIDIQIASSGNDAIEHIALDRPDVVLAQLAMEGMSGLRLA 65
           ++A  +P   R L  +L I    +Q AS G D +E I  ++P ++L  + M GMSG ++ 
Sbjct: 726 IVADDEPVNLRVLESFLRIEGYRVQTASDGPDTLELIEHEKPALLLLDIMMPGMSGYQVC 785

Query: 66  HYLKAQEQLADVPVILLCRDEREMDLVKG 94
           H L+ Q  +A++P+I+L    +  D V+G
Sbjct: 786 HQLRQQYDMAELPIIMLTALSQSEDRVRG 814


>ref|ZP_02003366.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gb|EDN66634.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 365

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 45/89 (50%)

Query: 6  LIATTQPEVSRALTEWLAINDIDIQIASSGNDAIEHIALDRPDVVLAQLAMEGMSGLRLA 65
          LI    P   + L   L   D  +Q+A  G DA+E +A  +PD++L  + M GM G    
Sbjct: 10 LIVDDIPTNLKLLMNVLRHLDFTVQVAQDGEDALEQVAYAKPDLILLDVMMPGMDGFETC 69

Query: 66 HYLKAQEQLADVPVILLCRDEREMDLVKG 94
            LKA E+  D+PVI +      +D VKG
Sbjct: 70 RRLKADEKTHDIPVIFMTALTETVDKVKG 98


>ref|ZP_01311862.1| two component transcriptional regulator, winged helix family
          [Desulfuromonas acetoxidans DSM 684]
 gb|EAT16672.1| two component transcriptional regulator, winged helix family
          [Desulfuromonas acetoxidans DSM 684]
          Length = 231

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 51/94 (54%)

Query: 1  MHKTALIATTQPEVSRALTEWLAINDIDIQIASSGNDAIEHIALDRPDVVLAQLAMEGMS 60
          M+K  LI   + ++   +   L+ +  ++  A++G D +E    + PD+++  L + GM 
Sbjct: 1  MNKNILIVEDEEDILALVHYNLSRDGFEVTTATTGEDGVEQARKEHPDLMILDLMLPGMD 60

Query: 61 GLRLAHYLKAQEQLADVPVILLCRDEREMDLVKG 94
          GL +   LK   +L D+P+++L     E D+VKG
Sbjct: 61 GLEVCETLKKDRELRDIPIVMLTAKGEESDIVKG 94