BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4694.p (536 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002800235.1| Rhodanese-like protein [Azotobacter vineland... 647 0.0 ref|ZP_02885725.1| Rhodanese domain protein [Burkholderia gramin... 646 0.0 ref|ZP_02893478.1| Rhodanese domain protein [Burkholderia ambifa... 632 e-179 ref|YP_001117249.1| rhodanese domain-containing protein [Burkhol... 624 e-176 ref|YP_775572.1| rhodanese domain-containing protein [Burkholder... 622 e-176 >ref|YP_002800235.1| Rhodanese-like protein [Azotobacter vinelandii DJ] gb|ACO79260.1| Rhodanese-like protein [Azotobacter vinelandii DJ] Length = 527 Score = 647 bits (1668), Expect = 0.0, Method: Composition-based stats. Identities = 353/530 (66%), Positives = 413/530 (77%), Gaps = 5/530 (0%) Query: 8 ASLPVVSYAEVRAALLAREEIALLDVREEAPHAQSHPLFAANFPFSHLELNAFARLPRRD 67 + + + S+A++RAALLAREE+ALLDVREEAP A+ HPLFAAN P S L++ +AR+PRR Sbjct: 2 SRIAIRSFADIRAALLAREEVALLDVREEAPFAEGHPLFAANIPLSRLDIEVYARVPRRT 61 Query: 68 VRIVTLDDGEGLAVRAALRLRALGYTRVSVLAGGVRGWHEAGGELFQDVNVPSKAFGELV 127 + DDGEGLA RAA RL ALGY+ V++L GG+ GW AGGELF DVNVPSK+FGELV Sbjct: 62 APVTVYDDGEGLAERAAERLLALGYSDVALLEGGLAGWRAAGGELFIDVNVPSKSFGELV 121 Query: 128 ESKRHTPSLAAEEVKALLDSGQDVVVVDARRFDEYQNMNIPGSISVPGAELVLRLPAIAP 187 E++RHTPSLAAEEVKALLD DVVV+DARRFDEYQ M+IPG SVPGAELVLR+ +AP Sbjct: 122 EAERHTPSLAAEEVKALLDEKADVVVLDARRFDEYQTMSIPGGTSVPGAELVLRVRELAP 181 Query: 188 DPKTRVIVNCAGRTRSIIGTQSLVNAGLPNPVHALRNGTIGWTLAGQTLEHGQARRFPET 247 +P+TRVIVNCAGRTRSIIGTQSLVNAG+PNPV ALRNGTIGWTLAGQ LE GQ+RRFPE Sbjct: 182 NPRTRVIVNCAGRTRSIIGTQSLVNAGIPNPVAALRNGTIGWTLAGQRLEQGQSRRFPE- 240 Query: 248 VEASQREQARRQARSVADRAGVKRIPLARLAEL-AQPDRTVYRFDVRTPEQYRSGHLPDF 306 V A R A + AR+VAD+AGV R LA LA + RT Y FDVRTPE+Y +GHLP Sbjct: 241 VSAENRAIAAQSARAVADKAGVGRAALADLARWREEAGRTTYLFDVRTPEEYEAGHLPGA 300 Query: 307 LSAPGGQLVQETEMNAPVRGARIVLVDDDGVRADMTASWLAQMAWEVFVVDGVTAADFTV 366 S PGGQLVQET+ A VRGARIVL DDDGVRA+M+ASWLAQM WEV V+DG+ AADFT Sbjct: 301 RSTPGGQLVQETDHFASVRGARIVLADDDGVRANMSASWLAQMGWEVHVLDGLDAADFTE 360 Query: 367 SGDAPRALPVAALRPEQRISAQQLQRWLQADDGTVVLDVALSARYVAGHVPGAWFVLRSE 426 G +P A E I+ + LQ WL A+ T+VLD SA YV H+PGAW+ LR++ Sbjct: 361 RGGWSAPVPPAPQAEE--IAPETLQAWL-AEGDTLVLDFTTSANYVKRHIPGAWWALRAQ 417 Query: 427 MAAAARRFPSATRFVITCGSALLAQFAVPDLQALVSQPVFLLEGGNAAWSQAGLPLEKGE 486 + A + P A R+V+TCGS+LLA++AV +L AL +PVF+L GG+A W AGLPLE+GE Sbjct: 418 LPQALEKLPPAARYVVTCGSSLLARYAVDELHALSGKPVFVLAGGSATWIAAGLPLEEGE 477 Query: 487 THLLSPRIDRYRRPYEGTDNAASAMQAYLDWEFGLVEQLGRDGTHGFFVI 536 T L PR DRYRRPYEGTDN AMQAYLDWEFGLVEQLGRDGTHGFFVI Sbjct: 478 TALAVPRSDRYRRPYEGTDNPREAMQAYLDWEFGLVEQLGRDGTHGFFVI 527 >ref|ZP_02885725.1| Rhodanese domain protein [Burkholderia graminis C4D1M] gb|EDT08631.1| Rhodanese domain protein [Burkholderia graminis C4D1M] Length = 533 Score = 646 bits (1667), Expect = 0.0, Method: Composition-based stats. Identities = 355/524 (67%), Positives = 407/524 (77%), Gaps = 2/524 (0%) Query: 14 SYAEVRAALLAREEIALLDVREEAPHAQSHPLFAANFPFSHLELNAFARLPRRDVRIVTL 73 SYA+VR ALL REEIAL+DVREE PHA+SHPLFAAN P S LEL+A RLPRRDV IV L Sbjct: 11 SYADVRRALLEREEIALVDVREEDPHARSHPLFAANLPLSRLELDAPVRLPRRDVPIVVL 70 Query: 74 DDGEGLAVRAALRLRALGYTRVSVLAGGVRGWHEAGGELFQDVNVPSKAFGELVESKRHT 133 DDGEGLA RAA R +LGY+ V++L GG++GW +AGGELFQDVNVPSKAFGELVES RHT Sbjct: 71 DDGEGLAARAAERFESLGYSDVALLEGGLQGWRKAGGELFQDVNVPSKAFGELVESVRHT 130 Query: 134 PSLAAEEVKALLDSGQDVVVVDARRFDEYQNMNIPGSISVPGAELVLRLPAIAPDPKTRV 193 PSL A++V+ALLD ++VVV+DARRFDEYQ MNIPGSISVPGAELVLR +APDP TR+ Sbjct: 131 PSLPAQQVQALLDREENVVVLDARRFDEYQTMNIPGSISVPGAELVLRARELAPDPATRI 190 Query: 194 IVNCAGRTRSIIGTQSLVNAGLPNPVHALRNGTIGWTLAGQTLEHGQARRFPETVEASQR 253 IVNCAGRTRSIIG QSL+NAGLPNPV ALRNGTIGWTLAGQ L HG +RR V+ + R Sbjct: 191 IVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTIGWTLAGQPLAHGSSRRPGPVVDDALR 250 Query: 254 EQARRQARSVADRAGVKRIPLARLAELA-QPDRTVYRFDVRTPEQYRSGHLPDFLSAPGG 312 A AR+VADRA V R A + RTVYRFDVRTPE+Y +GH+P F SAPGG Sbjct: 251 LIAADGARAVADRAKVGRTSRDEARRWADEAVRTVYRFDVRTPEEYEAGHVPGFRSAPGG 310 Query: 313 QLVQETEMNAPVRGARIVLVDDDGVRADMTASWLAQMAWEVFVVDGVTAADFTVSGDAPR 372 QLVQETEM APVRGAR++L D DGVRA+MTASWLAQM EV+VVDG+TAADF G AP Sbjct: 311 QLVQETEMFAPVRGARVILADSDGVRANMTASWLAQMNIEVYVVDGLTAADFAEKGAAPA 370 Query: 373 ALPVAALRPEQRISAQQLQRWLQADDGTVVLDVALSARYVAGHVPGAWFVLRSEMAAAAR 432 A I+ +L LQ+ GTVVLD SA YV H+PGAWFV+RS++ A Sbjct: 371 ARLAPQPPDADEIAPAELAALLQS-PGTVVLDFTSSANYVKRHIPGAWFVIRSQLETALH 429 Query: 433 RFPSATRFVITCGSALLAQFAVPDLQALVSQPVFLLEGGNAAWSQAGLPLEKGETHLLSP 492 + P A R+V+TCGS+LLA+FA PD+ AL +PV +L GG AAW +AGLP+E GET L SP Sbjct: 430 KLPDARRYVLTCGSSLLARFAAPDVAALAGKPVQVLTGGTAAWIEAGLPVESGETRLASP 489 Query: 493 RIDRYRRPYEGTDNAASAMQAYLDWEFGLVEQLGRDGTHGFFVI 536 RIDRYRRPYEGTDNA AM AYL+WE+GLV QL RDGTHGF VI Sbjct: 490 RIDRYRRPYEGTDNAREAMNAYLEWEYGLVAQLARDGTHGFHVI 533 >ref|ZP_02893478.1| Rhodanese domain protein [Burkholderia ambifaria IOP40-10] gb|EDT00934.1| Rhodanese domain protein [Burkholderia ambifaria IOP40-10] Length = 541 Score = 632 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 355/537 (66%), Positives = 423/537 (78%), Gaps = 8/537 (1%) Query: 6 ATASLPVVSYAEVRAALLAREEIALLDVREEAPHAQSHPLFAANFPFSHLELNAFARLPR 65 +T+ PV SY EVRA LLAR+E+AL+DVREE P+AQ HPL+AANFP S LEL+A+ R+PR Sbjct: 7 STSRFPVASYQEVRARLLARDELALIDVREEDPYAQGHPLWAANFPLSKLELDAWTRIPR 66 Query: 66 RDVRIVTLDD--GEGLAVRAALRLRALGYTRVSVLAGGVRGWHEAGGELFQDVNVPSKAF 123 RD IV + GE LA RAA L LGYT V +L GG+ GW AGGELF DVNVPSK+F Sbjct: 67 RDTPIVVFGEAGGEDLAPRAAATLARLGYTDVRLLDGGLAGWLAAGGELFIDVNVPSKSF 126 Query: 124 GELVESKRHTPSLAAEEVKALLDSGQDVVVVDARRFDEYQNMNIPGSISVPGAELVLRLP 183 GE VE++RHTPSL+A+EV+AL+D+ DVV+VDARRFDEYQ MNIP S SVPGAELVLR+ Sbjct: 127 GEWVEAERHTPSLSAQEVQALIDAKADVVIVDARRFDEYQTMNIPTSTSVPGAELVLRVR 186 Query: 184 AIAPDPKTRVIVNCAGRTRSIIGTQSLVNAGLPNPVHALRNGTIGWTLAGQTLEHGQARR 243 A+AP+P+TRV+VNCAGRTRSIIGTQSL+NAGLPNPV ALRNGTIGWTLAGQTLE G +RR Sbjct: 187 ALAPNPQTRVVVNCAGRTRSIIGTQSLINAGLPNPVAALRNGTIGWTLAGQTLERGASRR 246 Query: 244 FPETVEASQREQARRQARSVADRAGVKRIPLARLAELAQPDRTVYRFDVRTPEQYRSGHL 303 FP+ V+ +QR++ARR AR+VA+RAGV RI LA +A L +PDRT+YRFDVRTPE+Y +GHL Sbjct: 247 FPDDVDPAQRDEARRAARAVAERAGVPRIALADVAALDEPDRTLYRFDVRTPEEYEAGHL 306 Query: 304 PDFLSAPGGQLVQETEMNAPVRGARIVLVDDDGVRADMTASWLAQMAWEVFVVDGVTAAD 363 P FLS PGGQLVQET+ +APVRGARIVL DDDGVRADMTASWLAQM W+V VV+ A Sbjct: 307 PGFLSTPGGQLVQETDHHAPVRGARIVLADDDGVRADMTASWLAQMGWDVRVVEPAGTAA 366 Query: 364 FTVSGDAPRALPVAALRPEQRISAQQLQRWL-QADDGTV-VLDVALSARYVAGHVPGAWF 421 F G PR +P E +S L WL +AD G + ++DV SA YV H+PGAWF Sbjct: 367 FVERGQPPRDVPATPQVSE--VSPATLAGWLKEADAGEIAIVDVTTSANYVKRHIPGAWF 424 Query: 422 VLRSEMAAAARRFPSATRFVITCGSALLAQFAVPDLQALV--SQPVFLLEGGNAAWSQAG 479 V+R+++ A P A R+V TCGS+LLA+FA D +AL+ S + +L GG AAW AG Sbjct: 425 VVRAQLRDALATIPPAKRYVFTCGSSLLARFAAHDARALLPASAAISVLTGGTAAWIDAG 484 Query: 480 LPLEKGETHLLSPRIDRYRRPYEGTDNAASAMQAYLDWEFGLVEQLGRDGTHGFFVI 536 LPLE G+THL SPR+DRYRRPYEGTDNAA+AMQAYLDWE+GLV+QL RDGTH F VI Sbjct: 485 LPLEHGDTHLASPRVDRYRRPYEGTDNAAAAMQAYLDWEYGLVDQLKRDGTHHFRVI 541 >ref|YP_001117249.1| rhodanese domain-containing protein [Burkholderia vietnamiensis G4] gb|ABO57784.1| Rhodanese domain protein [Burkholderia vietnamiensis G4] Length = 540 Score = 624 bits (1608), Expect = e-176, Method: Composition-based stats. Identities = 357/542 (65%), Positives = 425/542 (78%), Gaps = 8/542 (1%) Query: 1 MSQEHATASLPVVSYAEVRAALLAREEIALLDVREEAPHAQSHPLFAANFPFSHLELNAF 60 M + + PV +Y +VRA LLAR+E+AL+DVREE P+AQ HPL+AAN P S LEL+A+ Sbjct: 1 MQSADSLSRFPVATYEDVRARLLARDELALIDVREEDPYAQGHPLWAANLPLSKLELDAW 60 Query: 61 ARLPRRDVRIVTLDD--GEGLAVRAALRLRALGYTRVSVLAGGVRGWHEAGGELFQDVNV 118 R+PRRD IV + GE LA RAA +L LGYT V VL GG+ GW AGGELF DVNV Sbjct: 61 TRIPRRDTPIVVFGEAGGEDLAPRAAAKLAQLGYTDVRVLDGGLAGWRAAGGELFIDVNV 120 Query: 119 PSKAFGELVESKRHTPSLAAEEVKALLDSGQDVVVVDARRFDEYQNMNIPGSISVPGAEL 178 PSKAFGE VE++RHTPSL+AEEV+AL+D+ DVV+VDARR+DEYQ MNIP S SVPGAEL Sbjct: 121 PSKAFGEWVEAERHTPSLSAEEVQALIDAQADVVIVDARRYDEYQTMNIPTSTSVPGAEL 180 Query: 179 VLRLPAIAPDPKTRVIVNCAGRTRSIIGTQSLVNAGLPNPVHALRNGTIGWTLAGQTLEH 238 VLR+ A+AP+P T+V+VNCAGRTRSIIGTQSL+NAGLPNPV ALRNGTIGWTLAGQTLEH Sbjct: 181 VLRVRALAPNPATQVVVNCAGRTRSIIGTQSLINAGLPNPVAALRNGTIGWTLAGQTLEH 240 Query: 239 GQARRFPETVEASQREQARRQARSVADRAGVKRIPLARLAELAQPDRTVYRFDVRTPEQY 298 G ARRFP+ VE +QR++ARR AR+VA+RAGV RI L LA L +P ++YRFDVRTPE+Y Sbjct: 241 GAARRFPDDVEPAQRDEARRAARAVAERAGVPRITLTELAALDEPSSSLYRFDVRTPEEY 300 Query: 299 RSGHLPDFLSAPGGQLVQETEMNAPVRGARIVLVDDDGVRADMTASWLAQMAWEVFVVDG 358 SGHLP FLS PGGQLVQET+ +A VRGARIVL DDDGVRADMTASWLAQM W+V V++ Sbjct: 301 ESGHLPGFLSTPGGQLVQETDHHAAVRGARIVLADDDGVRADMTASWLAQMGWDVRVLEP 360 Query: 359 VTAADFTVSGDAPRALPVAALRPEQRISAQQLQRWL-QADDGTV-VLDVALSARYVAGHV 416 V A FT G PRA+P A E +S L WL +A G + ++DV SA YV H+ Sbjct: 361 VDPAAFTERGQPPRAVPAAPQVAE--VSPATLAGWLREAGAGEIAIVDVTTSANYVKRHI 418 Query: 417 PGAWFVLRSEMAAAARRFPSATRFVITCGSALLAQFAVPDLQALV--SQPVFLLEGGNAA 474 PGAWFV+R+++ A R PSA R+V TCGS+LLA+FA D +AL+ S P+ +L GG AA Sbjct: 419 PGAWFVVRAQLRDALRAIPSAQRYVFTCGSSLLARFAADDARALLPASAPISVLTGGTAA 478 Query: 475 WSQAGLPLEKGETHLLSPRIDRYRRPYEGTDNAASAMQAYLDWEFGLVEQLGRDGTHGFF 534 W AGLPL+ G+THL SPR+DRYRRPYEGTDNA++AMQAYLDWE+GLVEQL RDGTH F Sbjct: 479 WIDAGLPLKHGDTHLASPRVDRYRRPYEGTDNASAAMQAYLDWEYGLVEQLKRDGTHHFR 538 Query: 535 VI 536 VI Sbjct: 539 VI 540 >ref|YP_775572.1| rhodanese domain-containing protein [Burkholderia ambifaria AMMD] gb|ABI89238.1| Rhodanese domain protein [Burkholderia ambifaria AMMD] Length = 555 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 352/538 (65%), Positives = 419/538 (77%), Gaps = 10/538 (1%) Query: 6 ATASLPVVSYAEVRAALLAREEIALLDVREEAPHAQSHPLFAANFPFSHLELNAFARLPR 65 +T+ PV SY +VRA LLAR+E+AL+DVREE P+AQ HPL+AANFP S LEL+A+ R+PR Sbjct: 21 STSRFPVASYQDVRARLLARDELALIDVREEDPYAQGHPLWAANFPLSKLELDAWTRIPR 80 Query: 66 RDVRIVTLDD--GEGLAVRAALRLRALGYTRVSVLAGGVRGWHEAGGELFQDVNVPSKAF 123 RD IV + GE LA RAA L LGYT V +L GG+ GW AGGELF DVNVPSK+F Sbjct: 81 RDTPIVVFGEAGGEDLAPRAAATLARLGYTDVRLLDGGLAGWLAAGGELFIDVNVPSKSF 140 Query: 124 GELVESKRHTPSLAAEEVKALLDSGQDVVVVDARRFDEYQNMNIPGSISVPGAELVLRLP 183 GE VE++RHTPSL+A+EV+AL+D+ DVV+VDARRFDEYQ MNIP S SVPGAELVLR+ Sbjct: 141 GEWVEAERHTPSLSAQEVQALIDAQADVVIVDARRFDEYQTMNIPTSTSVPGAELVLRVR 200 Query: 184 AIAPDPKTRVIVNCAGRTRSIIGTQSLVNAGLPNPVHALRNGTIGWTLAGQTLEHGQARR 243 A+AP+P+TRV+VNCAGRTRSIIGTQSL+NAGLPNPV ALRNGTIGWTLAGQTLE G +RR Sbjct: 201 ALAPNPQTRVVVNCAGRTRSIIGTQSLINAGLPNPVAALRNGTIGWTLAGQTLERGASRR 260 Query: 244 FPETVEASQREQARRQARSVADRAGVKRIPLARLAELAQPDRTVYRFDVRTPEQYRSGHL 303 FP+ V+ +QR++ARR AR+VA+RAGV RI LA +A L +P RT+YRFDVRTPE+Y +GHL Sbjct: 261 FPDDVDPAQRDEARRAARAVAERAGVPRIALADVAALDEPGRTLYRFDVRTPEEYEAGHL 320 Query: 304 PDFLSAPGGQLVQETEMNAPVRGARIVLVDDDGVRADMTASWLAQMAWEVFVVDGVTAAD 363 P FLS PGGQLVQET+ +A VRGARIVL DDDGVRADMTASWLAQM W+V VV+ A Sbjct: 321 PGFLSTPGGQLVQETDHHAAVRGARIVLADDDGVRADMTASWLAQMGWDVRVVEPAGTAA 380 Query: 364 FTVSGDAPRALPVAALRPE-QRISAQQLQRWLQ--ADDGTVVLDVALSARYVAGHVPGAW 420 F G PR +P PE +S L WL+ A ++DV SA YV H+PGAW Sbjct: 381 FVERGQPPRDVPAT---PEVSEVSPATLAGWLKEAAAGEIAIVDVTTSANYVKRHIPGAW 437 Query: 421 FVLRSEMAAAARRFPSATRFVITCGSALLAQFAVPDLQALV--SQPVFLLEGGNAAWSQA 478 FV+R+++ A P A R+V TCGS+LLA+FA D +AL+ S + +L GG AAW A Sbjct: 438 FVVRAQLRDALAAIPPAKRYVFTCGSSLLARFAAHDARALLPASAAISVLTGGTAAWIDA 497 Query: 479 GLPLEKGETHLLSPRIDRYRRPYEGTDNAASAMQAYLDWEFGLVEQLGRDGTHGFFVI 536 GLPLE GETHL SPR+DRYRRPYEGTDNAA+AMQAYLDWE+GLV+QL RDGTH F VI Sbjct: 498 GLPLEHGETHLASPRVDRYRRPYEGTDNAAAAMQAYLDWEYGLVDQLKRDGTHHFRVI 555