BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4690.p (358 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777127.1| serine phosphatase, regulator of sigma subun... 579 e-163 emb|CAL60706.2| putative serine phosphatase [Herminiimonas arsen... 454 e-126 ref|YP_001098833.1| hypothetical protein HEAR0496 [Herminiimonas... 410 e-112 ref|YP_584407.1| hypothetical protein Rmet_2259 [Cupriavidus met... 391 e-107 ref|ZP_08570914.1| serine phosphatase RsbU, regulator of sigma s... 384 e-105 >ref|YP_003777127.1| serine phosphatase, regulator of sigma subunit [Herbaspirillum seropedicae SmR1] gb|ADJ65219.1| serine phosphatase, regulator of sigma subunit, protein [Herbaspirillum seropedicae SmR1] Length = 422 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 287/358 (80%), Positives = 309/358 (86%), Gaps = 5/358 (1%) Query: 1 MSQMSKPYHRELYERKSCIAFMDKDPLIVEADTPIETLGALAVASGDKTLADGFIIVDQG 60 MSQMSKPYHRELYERKSCIAFMDKDPLIV+ADTPIETLGALAVASGDKTLADGF+IV+QG Sbjct: 70 MSQMSKPYHRELYERKSCIAFMDKDPLIVDADTPIETLGALAVASGDKTLADGFMIVEQG 129 Query: 61 QLAGLGAGLALMRELVAMQEEKNRQVMQSIDYASVIQRAMLSASRAAMTEALADACLVWE 120 QL GLG+GLALMRELV +Q EKNRQVMQSIDYASVIQRAMLSASRAAM AL DACL+WE Sbjct: 130 QLNGLGSGLALMRELVDLQVEKNRQVMQSIDYASVIQRAMLSASRAAMGAALQDACLIWE 189 Query: 121 PRDVVGGDFYHFEPHPGGWFAAVADCTGHGVPGAFLTLIASSSLKQALELHGPHDPARLM 180 PRDVVGGDFYHFE HP GWFAAVADCTGHGVPGAFLTLIASS+LKQALELHGP DPARLM Sbjct: 190 PRDVVGGDFYHFEEHPQGWFAAVADCTGHGVPGAFLTLIASSALKQALELHGPRDPARLM 249 Query: 181 REVNRSMKRVLGQHGQSGKPSESDDGMDACFFWFDSATRTLTSSSAKMPLFLLVADGTEV 240 +EVNRSMKRVLGQHG KPSESDDGMDACFFWFDSA+RTLT ++AKM LFLL A +V Sbjct: 250 QEVNRSMKRVLGQHGAQDKPSESDDGMDACFFWFDSASRTLTCANAKMALFLLPAADEQV 309 Query: 241 LTIEGKRVGLGYVDTPDDMQWDNHSQQLAPGSMIFVCTDGVIDQIGGPKHIAFGKQRLRR 300 T+EGKRVGLGYVDTP+DMQW NH +A G M+FVCTDG+IDQIGG KHIAFGKQRLRR Sbjct: 310 QTVEGKRVGLGYVDTPEDMQWTNHCLPVADGDMVFVCTDGIIDQIGGAKHIAFGKQRLRR 369 Query: 301 TLLEHGSLAMPALGRVVMDIHGHYQGTQRRRDDICFFGVRLDAAQPGSQQDSQHGTHA 358 TLLE+ L + LGR +MD+H YQG QRRRDDI FFG R+ G SQH A Sbjct: 370 TLLEYRRLPLAELGRTLMDVHRDYQGAQRRRDDISFFGARI-----GGVFSSQHEVQA 422 >emb|CAL60706.2| putative serine phosphatase [Herminiimonas arsenicoxydans] Length = 420 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 224/344 (65%), Positives = 258/344 (75%) Query: 1 MSQMSKPYHRELYERKSCIAFMDKDPLIVEADTPIETLGALAVASGDKTLADGFIIVDQG 60 MSQMSKPY +ELYE+K+CIAFMDK+PLIV+A T IETL ALAV SGDKTLA+GF+IV+ Sbjct: 70 MSQMSKPYFKELYEKKTCIAFMDKNPLIVQAGTHIETLAALAVESGDKTLAEGFLIVEND 129 Query: 61 QLAGLGAGLALMRELVAMQEEKNRQVMQSIDYASVIQRAMLSASRAAMTEALADACLVWE 120 Q GLG+GL LMR +V +Q EKN QVMQSIDYAS IQRAM+S S AM+ L DACL+WE Sbjct: 130 QFLGLGSGLDLMRMMVDLQTEKNLQVMQSIDYASTIQRAMMSTSLKAMSATLNDACLIWE 189 Query: 121 PRDVVGGDFYHFEPHPGGWFAAVADCTGHGVPGAFLTLIASSSLKQALELHGPHDPARLM 180 PRDVVGGDFYHFE GWFAAVADCTGHGVPGAFLTLIASS L Q L GP DPA LM Sbjct: 190 PRDVVGGDFYHFERFNDGWFAAVADCTGHGVPGAFLTLIASSLLSQGLSKLGPKDPAMLM 249 Query: 181 REVNRSMKRVLGQHGQSGKPSESDDGMDACFFWFDSATRTLTSSSAKMPLFLLVADGTEV 240 EVNR MK LGQ + SESDDGMDA FFWF+ AT LT ++AK PLF+L+ D E+ Sbjct: 250 SEVNRGMKLALGQFADQNRLSESDDGMDAAFFWFNDATSELTCANAKAPLFILMPDQDEI 309 Query: 241 LTIEGKRVGLGYVDTPDDMQWDNHSQQLAPGSMIFVCTDGVIDQIGGPKHIAFGKQRLRR 300 TIEGKRVG+GYVDTP +M WDN + L +++ TDG+IDQIGG K+IAFGKQRLR Sbjct: 310 QTIEGKRVGIGYVDTPAEMCWDNKTCTLTNDAVVLSATDGIIDQIGGMKNIAFGKQRLRD 369 Query: 301 TLLEHGSLAMPALGRVVMDIHGHYQGTQRRRDDICFFGVRLDAA 344 LL H M G+++M YQG RRRDD+ FG RL A+ Sbjct: 370 YLLRHRDTPMEQFGQLLMLEQKAYQGLHRRRDDLTVFGFRLSAS 413 >ref|YP_001098833.1| hypothetical protein HEAR0496 [Herminiimonas arsenicoxydans] Length = 330 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 207/323 (64%), Positives = 238/323 (73%) Query: 22 MDKDPLIVEADTPIETLGALAVASGDKTLADGFIIVDQGQLAGLGAGLALMRELVAMQEE 81 MDK+PLIV+A T IETL ALAV SGDKTLA+GF+IV+ Q GLG+GL LMR +V +Q E Sbjct: 1 MDKNPLIVQAGTHIETLAALAVESGDKTLAEGFLIVENDQFLGLGSGLDLMRMMVDLQTE 60 Query: 82 KNRQVMQSIDYASVIQRAMLSASRAAMTEALADACLVWEPRDVVGGDFYHFEPHPGGWFA 141 KN QVMQSIDYAS IQRAM+S S AM+ L DACL+WEPRDVVGGDFYHFE GWFA Sbjct: 61 KNLQVMQSIDYASTIQRAMMSTSLKAMSATLNDACLIWEPRDVVGGDFYHFERFNDGWFA 120 Query: 142 AVADCTGHGVPGAFLTLIASSSLKQALELHGPHDPARLMREVNRSMKRVLGQHGQSGKPS 201 AVADCTGHGVPGAFLTLIASS L Q L GP DPA LM EVNR MK LGQ + S Sbjct: 121 AVADCTGHGVPGAFLTLIASSLLSQGLSKLGPKDPAMLMSEVNRGMKLALGQFADQNRLS 180 Query: 202 ESDDGMDACFFWFDSATRTLTSSSAKMPLFLLVADGTEVLTIEGKRVGLGYVDTPDDMQW 261 ESDDGMDA FFWF+ AT LT ++AK PLF+L+ D E+ TIEGKRVG+GYVDTP +M W Sbjct: 181 ESDDGMDAAFFWFNDATSELTCANAKAPLFILMPDQDEIQTIEGKRVGIGYVDTPAEMCW 240 Query: 262 DNHSQQLAPGSMIFVCTDGVIDQIGGPKHIAFGKQRLRRTLLEHGSLAMPALGRVVMDIH 321 DN + L +++ TDG+IDQIGG K+IAFGKQRLR LL H M G+++M Sbjct: 241 DNKTCTLTNDAVVLSATDGIIDQIGGMKNIAFGKQRLRDYLLRHRDTPMEQFGQLLMLEQ 300 Query: 322 GHYQGTQRRRDDICFFGVRLDAA 344 YQG RRRDD+ FG RL A+ Sbjct: 301 KAYQGLHRRRDDLTVFGFRLSAS 323 >ref|YP_584407.1| hypothetical protein Rmet_2259 [Cupriavidus metallidurans CH34] gb|ABF09138.1| conserved hypothetical protein [Cupriavidus metallidurans CH34] Length = 415 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 201/344 (58%), Positives = 238/344 (69%), Gaps = 4/344 (1%) Query: 1 MSQMSKPYHRELYERKSCIAFMDKDPLIVEADTPIETLGALAVASGDKTLADGFIIVDQG 60 +SQMSKPYHRELY RKSCIAFMDK+PLIV+A I+ L V G+K LADGFII Sbjct: 70 LSQMSKPYHRELYNRKSCIAFMDKEPLIVDAAMSIDALTFRTVEYGEKALADGFIIARDD 129 Query: 61 QLAGLGAGLALMRELVAMQEEKNRQVMQSIDYASVIQRAMLSASRAAMTEALADACLVWE 120 Q GLG GL LMR + MQ E+NRQ+M SIDYAS IQRAML ASR + L DA LVWE Sbjct: 130 QYIGLGQGLQLMRVVADMQAERNRQIMHSIDYASTIQRAMLRASREMLGATLPDAALVWE 189 Query: 121 PRDVVGGDFYHFEPHPGGWFAAVADCTGHGVPGAFLTLIASSSLKQALELHGPHDPARLM 180 PRDVVGGDFYHF GWFAA+ADCTGHGVPGAF+TLIASS L QA+E GP DP L+ Sbjct: 190 PRDVVGGDFYHFAAFEDGWFAALADCTGHGVPGAFMTLIASSLLTQAIEQIGPRDPGALL 249 Query: 181 REVNRSMKRVLGQHG----QSGKPSESDDGMDACFFWFDSATRTLTSSSAKMPLFLLVAD 236 VNR +K++LGQ+ +S SESDDGMDA FFWFD+ATR LT + AK LF+L Sbjct: 250 MAVNRGIKQMLGQNDREPRESPSASESDDGMDAAFFWFDNATRQLTFAGAKSSLFVLQPA 309 Query: 237 GTEVLTIEGKRVGLGYVDTPDDMQWDNHSQQLAPGSMIFVCTDGVIDQIGGPKHIAFGKQ 296 E I G R+G+GYVDT W N G+++FV TDG+IDQIGGPK IAFGK+ Sbjct: 310 DAEGEMINGARMGVGYVDTDMAFTWQNSVAPTTSGTLVFVTTDGLIDQIGGPKEIAFGKR 369 Query: 297 RLRRTLLEHGSLAMPALGRVVMDIHGHYQGTQRRRDDICFFGVR 340 R+R + + + + + + V D H +QGTQRRRDD+ FF R Sbjct: 370 RMREAICANRAASATQISQAVQDAHRDWQGTQRRRDDLTFFCFR 413 >ref|ZP_08570914.1| serine phosphatase RsbU, regulator of sigma subunit [Rheinheimera sp. A13L] gb|EGM77611.1| serine phosphatase RsbU, regulator of sigma subunit [Rheinheimera sp. A13L] Length = 416 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 193/341 (56%), Positives = 242/341 (70%) Query: 1 MSQMSKPYHRELYERKSCIAFMDKDPLIVEADTPIETLGALAVASGDKTLADGFIIVDQG 60 +SQMSK YH+ELY RKSCIAFMDKDPL+V+A IE+L AV G+K LADGFII +G Sbjct: 73 LSQMSKAYHKELYGRKSCIAFMDKDPLVVDAGMDIESLTFKAVEFGEKALADGFIITREG 132 Query: 61 QLAGLGAGLALMRELVAMQEEKNRQVMQSIDYASVIQRAMLSASRAAMTEALADACLVWE 120 +LAG+G GL LMR + +Q +NRQV SI+YASVIQR+ML S A+ L D+ LVWE Sbjct: 133 KLAGVGHGLQLMRIVADIQAARNRQVTHSIEYASVIQRSMLRTSSEALQNVLPDSDLVWE 192 Query: 121 PRDVVGGDFYHFEPHPGGWFAAVADCTGHGVPGAFLTLIASSSLKQALELHGPHDPARLM 180 PRD+VGGDFYHF GGWF AVADCTGHGVPGAF+TLIASSSL QA+E G +P++L+ Sbjct: 193 PRDIVGGDFYHFASQKGGWFGAVADCTGHGVPGAFMTLIASSSLGQAIEQLGADNPSQLL 252 Query: 181 REVNRSMKRVLGQHGQSGKPSESDDGMDACFFWFDSATRTLTSSSAKMPLFLLVADGTEV 240 +VNR +K++LGQ SDDGMDA FFWF++A RTL + AK LF+L V Sbjct: 253 GQVNRGIKQMLGQINDQDATPGSDDGMDAAFFWFNTAERTLLFAGAKSILFVLHPGEEGV 312 Query: 241 LTIEGKRVGLGYVDTPDDMQWDNHSQQLAPGSMIFVCTDGVIDQIGGPKHIAFGKQRLRR 300 I+G R G+GYVD+ D W N QL GS++FV TDG+IDQIGGPK IAFGK+R+R Sbjct: 313 EMIDGDRKGVGYVDSDMDFNWTNRLVQLRAGSLVFVTTDGLIDQIGGPKAIAFGKRRIRE 372 Query: 301 TLLEHGSLAMPALGRVVMDIHGHYQGTQRRRDDICFFGVRL 341 LL + + ++++D G +QG Q+RRDD+ FF R+ Sbjct: 373 VLLANRHQPSCTINQIMLDTFGEWQGQQQRRDDLTFFCFRV 413