BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4688.p         (166 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777125.1| hypothetical protein Hsero_3739 [Herbaspiril...   220   6e-56
ref|YP_001098831.1| hypothetical protein HEAR0494 [Herminiimonas...   176   1e-42
ref|ZP_04762930.1| putative lipoprotein [Acidovorax delafieldii ...   162   2e-38
ref|YP_584409.1| putative lipoprotein [Cupriavidus metallidurans...   160   4e-38
ref|YP_002910951.1| putative lipoprotein [Burkholderia glumae BG...   156   1e-36

>ref|YP_003777125.1| hypothetical protein Hsero_3739 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65217.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 130

 Score =  220 bits (560), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 114/129 (88%), Positives = 121/129 (93%)

Query: 38  MDNLFIAASASSPEVDFRFDQRTLSLKGESYPENAAQFWGEIITTLRRFLADDEQGSTIT 97
           MDNLFIAASASSPEVDFRF+QR LSLKGESYPENAAQFWGEII TLRRFLADD   + +T
Sbjct: 1   MDNLFIAASASSPEVDFRFEQRQLSLKGESYPENAAQFWGEIIATLRRFLADDSADAPLT 60

Query: 98  VNVALAYFNSSSTKMLFSLFDALNEKAESGTEVVLNWYHDEEDDTIFEFGQELQEDFAAL 157
           VNVALAYFNSSSTKMLFSLFDALNEKAE+GTEV+LNWYHDE+DDTIFEFGQELQEDF AL
Sbjct: 61  VNVALAYFNSSSTKMLFSLFDALNEKAEAGTEVILNWYHDEDDDTIFEFGQELQEDFPAL 120

Query: 158 VFHDHAVQS 166
           VFHDHAV +
Sbjct: 121 VFHDHAVSN 129


>ref|YP_001098831.1| hypothetical protein HEAR0494 [Herminiimonas arsenicoxydans]
 emb|CAL60704.1| conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 129

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/129 (68%), Positives = 105/129 (81%)

Query: 38  MDNLFIAASASSPEVDFRFDQRTLSLKGESYPENAAQFWGEIITTLRRFLADDEQGSTIT 97
           M+N FI ASASSPEVDFRFD+  L LKGE+YPENAA FWG+II  +  +L   E    +T
Sbjct: 1   MNNFFIPASASSPEVDFRFDEHRLLLKGEAYPENAALFWGDIIAAMNTYLGQIESDQQVT 60

Query: 98  VNVALAYFNSSSTKMLFSLFDALNEKAESGTEVVLNWYHDEEDDTIFEFGQELQEDFAAL 157
           V VAL+YFNSSSTKMLFSLF ALN+KA +G  VVL+WYHDE+DDTIFEFGQELQEDF  L
Sbjct: 61  VQVALSYFNSSSTKMLFSLFSALNDKALAGNTVVLDWYHDEDDDTIFEFGQELQEDFPEL 120

Query: 158 VFHDHAVQS 166
           +F+DHA+++
Sbjct: 121 IFNDHALRT 129


>ref|ZP_04762930.1| putative lipoprotein [Acidovorax delafieldii 2AN]
 gb|EER60257.1| putative lipoprotein [Acidovorax delafieldii 2AN]
          Length = 139

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/128 (66%), Positives = 103/128 (80%), Gaps = 1/128 (0%)

Query: 38  MDNLFIAASASSPEVDFRFDQRTLSLKGESYPENAAQFWGEIITTLRRFLADDEQGSTIT 97
           MDN++IA + SSPEVDFRFD  TLSL+GESYPENAA F+G+II  L+ +L D  Q S + 
Sbjct: 11  MDNIYIAPTPSSPEVDFRFDTHTLSLRGESYPENAAAFYGQIIERLKAYL-DLLQDSKVE 69

Query: 98  VNVALAYFNSSSTKMLFSLFDALNEKAESGTEVVLNWYHDEEDDTIFEFGQELQEDFAAL 157
           VN+ALAYFNSSSTKMLF+L  AL+E AE+G  + LNW+HDEEDDTIFEFGQEL EDF A+
Sbjct: 70  VNIALAYFNSSSTKMLFNLIAALDEAAEAGNHIALNWFHDEEDDTIFEFGQELCEDFPAI 129

Query: 158 VFHDHAVQ 165
            F +H V+
Sbjct: 130 HFVNHPVR 137


>ref|YP_584409.1| putative lipoprotein [Cupriavidus metallidurans CH34]
 gb|ABF09140.1| putative lipoprotein [Cupriavidus metallidurans CH34]
          Length = 129

 Score =  160 bits (406), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 84/129 (65%), Positives = 101/129 (78%), Gaps = 1/129 (0%)

Query: 38  MDNLFIAASASSPEVDFRFDQRTLSLKGESYPENAAQFWGEIITTLRRFLADDEQGSTIT 97
           M+NLFIAA+ SSPEV F F +  LSLKGESYPENAA F+GE +  LR++L+D + G+ +T
Sbjct: 1   MENLFIAATPSSPEVSFDFTRHVLSLKGESYPENAAVFYGEAVARLRKYLSDCD-GAAVT 59

Query: 98  VNVALAYFNSSSTKMLFSLFDALNEKAESGTEVVLNWYHDEEDDTIFEFGQELQEDFAAL 157
           VNVAL YFNSSSTKMLFS+FDALNE AE G E+ L+W+HDE+DDTI EFGQEL  DF A+
Sbjct: 60  VNVALTYFNSSSTKMLFSMFDALNEAAERGNEIRLHWFHDEDDDTILEFGQELHADFPAI 119

Query: 158 VFHDHAVQS 166
            F D    S
Sbjct: 120 DFIDEVTTS 128


>ref|YP_002910951.1| putative lipoprotein [Burkholderia glumae BGR1]
 gb|ACR28247.1| Putative lipoprotein [Burkholderia glumae BGR1]
          Length = 128

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/127 (62%), Positives = 103/127 (81%), Gaps = 1/127 (0%)

Query: 38  MDNLFIAASASSPEVDFRFDQRTLSLKGESYPENAAQFWGEIITTLRRFLADDEQGSTIT 97
           MDNLFI A+ +SPE+DFRFDQ  LS+KGESYPENAA F+  II T+RR+LA+   G+ IT
Sbjct: 1   MDNLFIPATTTSPEIDFRFDQHRLSIKGESYPENAAAFYAPIIDTMRRYLAE-STGAAIT 59

Query: 98  VNVALAYFNSSSTKMLFSLFDALNEKAESGTEVVLNWYHDEEDDTIFEFGQELQEDFAAL 157
           ++VAL YFNSSSTKMLFS+FDAL++ A++G+ V +NW+ DEED+TI EFG+EL+ DF A+
Sbjct: 60  IDVALTYFNSSSTKMLFSIFDALDQAAQAGSRVSMNWFRDEEDETIAEFGEELKADFDAI 119

Query: 158 VFHDHAV 164
            F D  V
Sbjct: 120 EFSDRPV 126