BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4687.p (240 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777124.1| GGDEF domain-containing protein [Herbaspiril... 355 2e-96 ref|YP_001098830.1| putative signaling protein [Herminiimonas ar... 275 4e-72 ref|YP_584410.1| putative signaling protein [Cupriavidus metalli... 227 1e-57 ref|YP_003521591.1| PleD [Pantoea ananatis LMG 20103] >gi|291153... 218 7e-55 ref|YP_004117171.1| diguanylate cyclase [Pantoea sp. At-9b] >gi|... 214 9e-54 >ref|YP_003777124.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ65216.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 355 bits (912), Expect = 2e-96, Method: Composition-based stats. Identities = 206/240 (85%), Positives = 219/240 (91%) Query: 1 MDGGDLFAAEAEALHRANAVLADPASDPASHRAALEELVQHYGQLMRQSRRLISRSDRTE 60 M DLF EA AL RAN VLA A DP+++R AL+ELVQHYGQLMRQSRRLISRSDRTE Sbjct: 1 MSKVDLFEQEALALQRANDVLAMAAPDPSAYRTALQELVQHYGQLMRQSRRLISRSDRTE 60 Query: 61 RELNLLNARLQQLSDELDYKARHDNLTGALNRGAVFEQAHQILQQSPMSLVVLDIDFFKR 120 RELN LNARLQQLSDELDYKARHDNLTGALNRGAVFE+AHQ+LQ+SPMSLVVLDIDFFKR Sbjct: 61 RELNQLNARLQQLSDELDYKARHDNLTGALNRGAVFERAHQVLQKSPMSLVVLDIDFFKR 120 Query: 121 INDEFGHPAGDAVIRELVARLRTTLAGNGVIGRVGGEEFTILLSGVALEQAVILAGRIRQ 180 INDEFGHP GDAVIRELVARLRTT+ G GVIGRVGGEEFTILL G+ALE AV+LAGRIRQ Sbjct: 121 INDEFGHPTGDAVIRELVARLRTTVDGVGVIGRVGGEEFTILLPGMALEPAVVLAGRIRQ 180 Query: 181 AIAGDRFQCLPARPVTSSFGVAWAAAGSDFEEAYARADQALYQAKRGGRNRVESEESVTG 240 AIAG+RF CLPARPVTSSFGVAWA AGSDFE+AYARADQALYQAKR GRNRVESEE+VTG Sbjct: 181 AIAGERFGCLPARPVTSSFGVAWATAGSDFEQAYARADQALYQAKRSGRNRVESEETVTG 240 >ref|YP_001098830.1| putative signaling protein [Herminiimonas arsenicoxydans] emb|CAL60703.1| conserved hypothetical protein; putative GGDEF domain [Herminiimonas arsenicoxydans] Length = 258 Score = 275 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 137/238 (57%), Positives = 179/238 (75%) Query: 1 MDGGDLFAAEAEALHRANAVLADPASDPASHRAALEELVQHYGQLMRQSRRLISRSDRTE 60 M+ DLF AE AL+ A V++ + +R AL+ L + + +LMR++RRLI+RSDR E Sbjct: 1 MNDNDLFEAETAALNSAYDVISKDDASGDEYRIALDNLAKDFHRLMRETRRLIARSDRKE 60 Query: 61 RELNLLNARLQQLSDELDYKARHDNLTGALNRGAVFEQAHQILQQSPMSLVVLDIDFFKR 120 ELN LN +L+QL+ ELDYKARHDNLTG LNRGAVF+QA L+ +P+SL+VLDIDFFKR Sbjct: 61 LELNTLNFKLEQLTSELDYKARHDNLTGVLNRGAVFDQAEHYLKSNPLSLIVLDIDFFKR 120 Query: 121 INDEFGHPAGDAVIRELVARLRTTLAGNGVIGRVGGEEFTILLSGVALEQAVILAGRIRQ 180 INDEFGHP GDAV+RELV +L+++L G G IGRVGGEEFT+LL ++L+ A+ +A +R Sbjct: 121 INDEFGHPTGDAVLRELVKKLKSSLNGVGEIGRVGGEEFTVLLPNISLDDAIEIAENVRL 180 Query: 181 AIAGDRFQCLPARPVTSSFGVAWAAAGSDFEEAYARADQALYQAKRGGRNRVESEESV 238 AIA + F C P VT+SFG++W+ DFE AY RAD ALY+AK GRNRVE++ S+ Sbjct: 181 AIAAETFTCFPRPHVTASFGISWSDTNCDFENAYGRADAALYKAKHNGRNRVEADISI 238 >ref|YP_584410.1| putative signaling protein [Cupriavidus metallidurans CH34] gb|ABF09141.1| putative signaling protein (GGDEF domain) [Cupriavidus metallidurans CH34] Length = 237 Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 123/228 (53%), Positives = 161/228 (70%) Query: 5 DLFAAEAEALHRANAVLADPASDPASHRAALEELVQHYGQLMRQSRRLISRSDRTERELN 64 DLF +E L A +V D + ++R L +L+ +Y +LMR++RRLI RSDR E E+N Sbjct: 5 DLFESENSVLAHARSVFCDVDAGEEAYRHTLGQLISYYERLMRETRRLIRRSDREELEMN 64 Query: 65 LLNARLQQLSDELDYKARHDNLTGALNRGAVFEQAHQILQQSPMSLVVLDIDFFKRINDE 124 LN RLQ+L+ EL+Y+A HD LTGALNRGAV ++A L + ++L+V+DID FKR+ND+ Sbjct: 65 RLNHRLQELAQELEYRATHDTLTGALNRGAVIDRATAALARGSLALIVIDIDHFKRLNDD 124 Query: 125 FGHPAGDAVIRELVARLRTTLAGNGVIGRVGGEEFTILLSGVALEQAVILAGRIRQAIAG 184 FGHP GDAVI + A L+ T+ GVIGR+GGEEF LL ++ A LA ++RQAIAG Sbjct: 125 FGHPVGDAVICGVTACLKDTVRMEGVIGRMGGEEFAALLPDFTIDAAATLADQMRQAIAG 184 Query: 185 DRFQCLPARPVTSSFGVAWAAAGSDFEEAYARADQALYQAKRGGRNRV 232 RF R VT+SFGV+W+ G FE AY RAD+ALY+AKRGGRNRV Sbjct: 185 HRFPAPVNREVTASFGVSWSPQGRPFEHAYGRADEALYEAKRGGRNRV 232 >ref|YP_003521591.1| PleD [Pantoea ananatis LMG 20103] gb|ADD78463.1| PleD [Pantoea ananatis LMG 20103] dbj|BAK12623.1| response regulator PleD [Pantoea ananatis AJ13355] Length = 236 Score = 218 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 117/228 (51%), Positives = 153/228 (67%) Query: 5 DLFAAEAEALHRANAVLADPASDPASHRAALEELVQHYGQLMRQSRRLISRSDRTERELN 64 +LF E +AL++A+ V A + +R AL +L HY +LMR++ RLISRSDR ERELN Sbjct: 6 ELFLEETQALNQASHVAAQHSLQAEEYRQALLQLNGHYQRLMRETYRLISRSDRAERELN 65 Query: 65 LLNARLQQLSDELDYKARHDNLTGALNRGAVFEQAHQILQQSPMSLVVLDIDFFKRINDE 124 +N +L +L+ EL+YKA HD LT NR A+ ++ L Q+P +L++LDIDFFKRINDE Sbjct: 66 RVNEQLNELATELEYKATHDPLTDVWNRSAIIQRISDTLDQAPAALIILDIDFFKRINDE 125 Query: 125 FGHPAGDAVIRELVARLRTTLAGNGVIGRVGGEEFTILLSGVALEQAVILAGRIRQAIAG 184 +GHP GD VI ELV R++ IGR+GGEEFTI+L L AVI+AG I ++ Sbjct: 126 YGHPVGDKVICELVQRIQRNTPAIASIGRIGGEEFTIMLPNTWLGDAVIVAGAILASLNA 185 Query: 185 DRFQCLPARPVTSSFGVAWAAAGSDFEEAYARADQALYQAKRGGRNRV 232 LP R VT+S GV+W AAG+ FE Y +AD ALY AK+ GRNRV Sbjct: 186 SPLNALPERLVTASLGVSWGAAGTRFETLYTQADAALYDAKKHGRNRV 233 >ref|YP_004117171.1| diguanylate cyclase [Pantoea sp. At-9b] gb|ADU70615.1| diguanylate cyclase [Pantoea sp. At-9b] Length = 236 Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats. Identities = 116/232 (50%), Positives = 149/232 (64%) Query: 1 MDGGDLFAAEAEALHRANAVLADPASDPASHRAALEELVQHYGQLMRQSRRLISRSDRTE 60 +D +LF E+E LHR+ V A + +R AL L +HY +LMR++ RLISRSDR E Sbjct: 2 IDLNELFREESEVLHRSQDVAAQSSLSAEDYRNALLRLNRHYQRLMRETYRLISRSDRAE 61 Query: 61 RELNLLNARLQQLSDELDYKARHDNLTGALNRGAVFEQAHQILQQSPMSLVVLDIDFFKR 120 RELN +N +L QL+ EL+YKA HD LT NR A+ ++ L P +L++LDID FK+ Sbjct: 62 RELNRVNEQLNQLAQELEYKATHDPLTAVWNRSAIIQRIMLTLAHGPAALIILDIDHFKK 121 Query: 121 INDEFGHPAGDAVIRELVARLRTTLAGNGVIGRVGGEEFTILLSGVALEQAVILAGRIRQ 180 INDEFGHP GD VI ELV+R++ IGR+GGEEFT+LL L AVI+AG I Sbjct: 122 INDEFGHPMGDKVICELVSRVQAHCPAEANIGRIGGEEFTVLLPHFRLSDAVIVAGAIHA 181 Query: 181 AIAGDRFQCLPARPVTSSFGVAWAAAGSDFEEAYARADQALYQAKRGGRNRV 232 ++ LP + VT+S GV++ GSDFE Y AD ALY AK GRNRV Sbjct: 182 SLNASPLAVLPGQLVTASLGVSYGKPGSDFETLYNNADAALYDAKNHGRNRV 233