BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4686.p (221 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777123.1| two component response regulator protein [He... 233 2e-59 ref|YP_004501520.1| two component LuxR family transcriptional re... 105 5e-21 ref|ZP_06190706.1| transcriptional regulatory protein [Serratia ... 104 1e-20 ref|YP_002890831.1| LuxR family transcriptional regulator [Thaue... 100 1e-19 ref|YP_003526980.1| response regulator receiver [Nitrosococcus h... 99 3e-19 >ref|YP_003777123.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65215.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 195 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 144/211 (68%), Positives = 159/211 (75%), Gaps = 16/211 (7%) Query: 11 MTTAHLAHIVGGEDSHGGPLVRLLEAAGFHVAHHPSADQFLQHTTGTARGGLVLEVHMQN 70 MT AHLAHIVGG+DS GGPL RLLE AGFHVAHH SADQFL+H T T GGLVL V+M+N Sbjct: 1 MTNAHLAHIVGGDDSLGGPLGRLLEEAGFHVAHHRSADQFLEHATATGPGGLVLAVNMRN 60 Query: 71 LDAPRLRSLLDERELGRPLIVITGAPPAASPEDKRYGPHDPGQRLMSVPAGDAGTQPMVR 130 +DAP+LRSLLDE++ G PLIVITG P A+P + A +P V Sbjct: 61 MDAPQLRSLLDEKKEGIPLIVITGNQPGAAP----------------LGQSSAQQEPEVA 104 Query: 131 QQLVEAFRGALMPFDESGPQMRQQQEHHQRLKTLTRREREVLERLVKGRLNKQIAAELGT 190 QQLV AFR ALMP+DES P +Q++ H RL TLTRREREVL LVKGRLNKQIAAELGT Sbjct: 105 QQLVAAFREALMPYDESAPHQQQRRIHQARLATLTRREREVLMLLVKGRLNKQIAAELGT 164 Query: 191 SERTVKAHRQQVMRKMNAGSLAALVAAMTRY 221 SERTVKAHRQQVMRKM AGSLA LVAAMTRY Sbjct: 165 SERTVKAHRQQVMRKMYAGSLAELVAAMTRY 195 >ref|YP_004501520.1| two component LuxR family transcriptional regulator [Serratia sp. AS12] ref|YP_004506472.1| two component LuxR family transcriptional regulator [Serratia sp. AS9] gb|AEF46211.1| two component transcriptional regulator, LuxR family [Serratia sp. AS9] gb|AEF51163.1| two component transcriptional regulator, LuxR family [Serratia sp. AS12] gb|AEG28871.1| two component transcriptional regulator, LuxR family [Serratia sp. AS13] Length = 206 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 107/206 (51%), Gaps = 11/206 (5%) Query: 15 HLAHIVGGEDSHGGPLVRLLEAAGFHVAHHPSADQFLQHTTGTARGGLVLEVHMQNLDAP 74 H+ ++V + S +VRLL +AG+ A+ FL H+ G ++L++ M + D Sbjct: 3 HVVYVVDDDHSVRQSIVRLLNSAGYSAVDFDCAEAFLSHSFPAIPGCIILDMRMPSGDGF 62 Query: 75 RLRSLLDERELGRPLIVITGAPPAASPEDKRYGPHDPGQRLMSVPAGDAGTQPMVRQQLV 134 + L P+I +TG YG + M A + T+P+ L+ Sbjct: 63 EVTDALKASGREMPVIFLTG-----------YGTIPLSVQAMKAGAHEFLTKPVASDDLL 111 Query: 135 EAFRGALMPFDESGPQMRQQQEHHQRLKTLTRREREVLERLVKGRLNKQIAAELGTSERT 194 +A + AL E+ Q+R+ E QR TLT RE+EVLE +KG +NKQIAAELG SE T Sbjct: 112 KAVQEALNLAAENSDQLREHYELKQRHLTLTPREQEVLELTIKGLMNKQIAAELGVSEIT 171 Query: 195 VKAHRQQVMRKMNAGSLAALVAAMTR 220 VK HR++VM KM SLA LV R Sbjct: 172 VKVHRRRVMDKMQVRSLADLVRDAER 197 >ref|ZP_06190706.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gb|EFA16212.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 206 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 107/206 (51%), Gaps = 11/206 (5%) Query: 15 HLAHIVGGEDSHGGPLVRLLEAAGFHVAHHPSADQFLQHTTGTARGGLVLEVHMQNLDAP 74 H+ ++V + S +VRLL +AG++ A+ FL H G ++L++ M + D Sbjct: 3 HVVYVVDDDHSVRQSIVRLLNSAGYNAVDFDCAEAFLTHAFPAIPGCIILDMRMPSGDGF 62 Query: 75 RLRSLLDERELGRPLIVITGAPPAASPEDKRYGPHDPGQRLMSVPAGDAGTQPMVRQQLV 134 + L P+I +TG YG + M A + T+P+ L+ Sbjct: 63 AVTDALKASGREMPVIFLTG-----------YGTIPLSVQAMKAGAHEFLTKPVASDDLL 111 Query: 135 EAFRGALMPFDESGPQMRQQQEHHQRLKTLTRREREVLERLVKGRLNKQIAAELGTSERT 194 +A + AL E+ Q+R+ E QR TLT RE+EVLE +KG +NKQIAAELG SE T Sbjct: 112 KAVQEALNLAAENSDQLREHYELKQRHLTLTPREQEVLELTIKGLMNKQIAAELGVSEIT 171 Query: 195 VKAHRQQVMRKMNAGSLAALVAAMTR 220 VK HR++VM KM SLA LV R Sbjct: 172 VKVHRRRVMDKMQVRSLADLVRHAER 197 >ref|YP_002890831.1| LuxR family transcriptional regulator [Thauera sp. MZ1T] gb|ACR02454.1| two component transcriptional regulator, LuxR family [Thauera sp. MZ1T] Length = 224 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 76/215 (35%), Positives = 106/215 (49%), Gaps = 11/215 (5%) Query: 6 SRKKNMTTAHLAHIVGGEDSHGGPLVRLLEAAGFHVAHHPSADQFLQHTTGTARGGLVLE 65 + K +M+ A ++ ++ L RLL AAG+ V SA FL+ ++L+ Sbjct: 5 AEKPDMSAAPTIFVIDDDEDVRTSLSRLLRAAGWQVETFASAGDFLERPACAGTACVLLD 64 Query: 66 VHMQNLDAPRLRSLLDERELGRPLIVITGAPPAASPEDKRYGPHDPGQRLMSVPAGDAGT 125 V M + PRL + R + P+I +TG G + M A D Sbjct: 65 VDMPEMTGPRLHETMLARGIDMPVIFLTGK-----------GDVPTTVQAMKRGAVDFLL 113 Query: 126 QPMVRQQLVEAFRGALMPFDESGPQMRQQQEHHQRLKTLTRREREVLERLVKGRLNKQIA 185 +P+ L A AL D + R+Q RL L+ REREV+E +V GRLNKQIA Sbjct: 114 KPVENDTLFAAIEIALRRHDSDQARRREQLGIAMRLDRLSAREREVMELVVLGRLNKQIA 173 Query: 186 AELGTSERTVKAHRQQVMRKMNAGSLAALVAAMTR 220 AELG +E+TVK HR +VM KM S+AALV + R Sbjct: 174 AELGIAEKTVKIHRGRVMEKMEVQSVAALVHLLDR 208 >ref|YP_003526980.1| response regulator receiver [Nitrosococcus halophilus Nc4] gb|ADE14593.1| response regulator receiver [Nitrosococcus halophilus Nc4] Length = 202 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 71/205 (34%), Positives = 106/205 (51%), Gaps = 11/205 (5%) Query: 11 MTTAHLAHIVGGEDSHGGPLVRLLEAAGFHVAHHPSADQFLQHTTGTARGGLVLEVHMQN 70 M + +IV +D+ L LL+ GF+V + SA FL+ G ++L+V M Sbjct: 1 MLPENTIYIVDDDDAMRKSLALLLKGEGFNVKTYASAQAFLESEESPFTGCILLDVRMPG 60 Query: 71 LDAPRLRSLLDERELGRPLIVITGAPPAASPEDKRYGPHDPGQRLMSVPAGDAGTQPMVR 130 +D L+ LL +R + P+I+ITG + M A D +P Sbjct: 61 MDGFELQELLPQRGIHLPVIMITGHADVPM-----------AVQAMKSGAEDFIEKPFRA 109 Query: 131 QQLVEAFRGALMPFDESGPQMRQQQEHHQRLKTLTRREREVLERLVKGRLNKQIAAELGT 190 Q L++ AL + G Q+E +L++LT+RER+V E L +G++NK IAAEL Sbjct: 110 QALLDRIHKALSEGNHQGQFQDPQREFLTQLESLTKRERQVFELLAEGKMNKHIAAELSI 169 Query: 191 SERTVKAHRQQVMRKMNAGSLAALV 215 S RTV+AHR +VM K+ A SLA L+ Sbjct: 170 SIRTVEAHRAKVMEKLKAKSLADLI 194