BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4685.p (282 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777122.1| two component response regulator protein [He... 481 e-134 ref|YP_562691.1| GGDEF domain-containing protein [Shewanella den... 274 1e-71 ref|YP_901019.1| response regulator receiver modulated diguanyla... 273 2e-71 ref|ZP_04618055.1| Response regulator receiver modulated diguany... 267 1e-69 ref|YP_004513870.1| response regulator receiver modulated diguan... 266 2e-69 >ref|YP_003777122.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65214.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 320 Score = 481 bits (1237), Expect = e-134, Method: Composition-based stats. Identities = 227/269 (84%), Positives = 250/269 (92%) Query: 1 MATSGLQAIELCEKVVPDLILMDVNMPGLNGYETCERLKQNTATLGIPVIFLTGLQSEED 60 MATSGLQAIEL E+V PDLILMDVNMPGLNGY+TC RLKQNT TLGIPVIFLTGL+SEED Sbjct: 43 MATSGLQAIELSERVTPDLILMDVNMPGLNGYDTCARLKQNTLTLGIPVIFLTGLKSEED 102 Query: 61 EVKGFDAGGVDFISKPINGTVLKARVLTHLTLKLQSDFYRNIAVTDSLTGLFNRRKFDSE 120 EVK F+ GGVDFISKPINGTVLKARVLTHLTLKLQSDFY NIAVTDSLTGLFNRRKFDSE Sbjct: 103 EVKAFEVGGVDFISKPINGTVLKARVLTHLTLKLQSDFYLNIAVTDSLTGLFNRRKFDSE 162 Query: 121 LAEKWELCKRSGQAMSLLMIDIDYFKKYNDHYGHQAGDHCLAEVAHAIRSNFHRSYDCVA 180 LAEKWELCKRSGQAMSLL+IDID+FK+YNDHYGHQAGDHCLAEVAH IRSNFHRSYDCVA Sbjct: 163 LAEKWELCKRSGQAMSLLLIDIDHFKQYNDHYGHQAGDHCLAEVAHTIRSNFHRSYDCVA 222 Query: 181 RYGGEEFACILPMAGREQALKLARDVCDAVARLHLPHARSDASEFVTLSIGVASVDVPGH 240 RYGGEEFACILPM GREQA++ A++VC +VARLHLPHARSD S +V+LSIGVA++ P H Sbjct: 223 RYGGEEFACILPMTGREQAIRQAQEVCHSVARLHLPHARSDTSAWVSLSIGVATMIAPDH 282 Query: 241 SSTPAALIALADQNLYQAKAHGRAQVYCA 269 +++P AL+ALAD+NLY AKA+GRAQV+ A Sbjct: 283 NASPVALLALADKNLYAAKANGRAQVFAA 311 >ref|YP_562691.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gb|ABE54968.1| response regulator receiver modulated diguanylate cyclase [Shewanella denitrificans OS217] Length = 323 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 130/266 (48%), Positives = 176/266 (66%), Gaps = 1/266 (0%) Query: 1 MATSGLQAIELCEKVVPDLILMDVNMPGLNGYETCERLKQNTATLGIPVIFLTGLQSEED 60 MAT GL+AIE+CEK+ PD+IL+D+ MP LNG++ C +LKQ T I VIF+TG E Sbjct: 42 MATDGLKAIEICEKIQPDIILLDIEMPNLNGFDVCAKLKQRAETRSIAVIFVTGHFDLEK 101 Query: 61 EVKGFDAGGVDFISKPINGTVLKARVLTHLTLKLQSDFYRNIAVTDSLTGLFNRRKFDSE 120 EV+GF G VDFI KPIN + +AR+ LK QSD R+IA+ D LTG+ NRRKF+ Sbjct: 102 EVQGFQLGAVDFIHKPINPVITQARIKNQFKLKRQSDLLRSIALLDGLTGVANRRKFEQH 161 Query: 121 LAEKWELCKRSGQAMSLLMIDIDYFKKYNDHYGHQAGDHCLAEVAHAIRSNFHRSYDCVA 180 W+ C R +S++M+DID+FK++ND YGH GD CL +VA I S R YD VA Sbjct: 162 TPTTWQHCLRDKLPISIVMLDIDFFKRFNDCYGHSKGDECLRKVAQTINSRARRPYDLVA 221 Query: 181 RYGGEEFACILPMAGREQALKLARDVCDAVARLHLPHARSDASEFVTLSIGVASVDVPGH 240 R+GGEEF C++P + AL + + + D++ L +PH SD +FVT+S G+ASV +P Sbjct: 222 RFGGEEFICVMPNTDFDGALFVTQQIVDSIIALKIPHEGSDVMKFVTISAGLASV-IPSQ 280 Query: 241 SSTPAALIALADQNLYQAKAHGRAQV 266 + ALI AD+ LY+AK+ GR +V Sbjct: 281 NMELQALIESADKQLYRAKSQGRNRV 306 >ref|YP_901019.1| response regulator receiver modulated diguanylate cyclase [Pelobacter propionicus DSM 2379] gb|ABK98961.1| response regulator receiver modulated diguanylate cyclase [Pelobacter propionicus DSM 2379] Length = 319 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 133/274 (48%), Positives = 179/274 (65%), Gaps = 2/274 (0%) Query: 1 MATSGLQAIELCEKVVPDLILMDVNMPGLNGYETCERLKQNTATLGIPVIFLTGLQSEED 60 +ATS LQ +E+C+ PDLI++D+ MP +NG E C +LK + T IPVIF+T + E+ Sbjct: 48 IATSALQGLEMCDTNPPDLIMLDIVMPSMNGLEMCRQLKSDQRTRDIPVIFVTAYGNPEE 107 Query: 61 EVKGFDAGGVDFISKPINGTVLKARVLTHLTLKLQSDFYRNIAVTDSLTGLFNRRKFDSE 120 E +G +AG VDFI KP N V++ARV THLT+K Q+D R++A D LTG+ NRR+FD Sbjct: 108 ETRGLEAGAVDFIMKPFNSAVVRARVQTHLTMKAQADLLRSMAFIDGLTGVANRRRFDES 167 Query: 121 LAEKWELCKRSGQAMSLLMIDIDYFKKYNDHYGHQAGDHCLAEVAHAIRSNFHRSYDCVA 180 L +W C+R ++LLMIDID+FKKYND YGHQ GD CL ++A +R R +D VA Sbjct: 168 LEAEWRQCRRHRAPLALLMIDIDHFKKYNDSYGHQEGDVCLRKIATLLREELGRPHDLVA 227 Query: 181 RYGGEEFACILPMAGREQALKLARDVCDAVARLHLPHARSDASEFVTLSIGVASVDVPGH 240 RYGGEEFAC+LP E A+ A+ + A+ R +PH S+ + FVT+S+GVA V PG Sbjct: 228 RYGGEEFACLLPGVDMEGAMYKAQSILTALHRQAIPHVSSETAPFVTISLGVA-VTSPGP 286 Query: 241 SSTPAALIALADQNLYQAKAHGRAQVYCATPAED 274 L+A AD LY+AK GR ++ C D Sbjct: 287 EPRHGQLVATADTQLYKAKQQGRNRI-CGQEVTD 319 >ref|ZP_04618055.1| Response regulator receiver modulated diguanylate cyclase [Yersinia aldovae ATCC 35236] gb|EEP97226.1| Response regulator receiver modulated diguanylate cyclase [Yersinia aldovae ATCC 35236] Length = 309 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 134/273 (49%), Positives = 172/273 (63%), Gaps = 2/273 (0%) Query: 1 MATSGLQAIELCEKVVPDLILMDVNMPGLNGYETCERLKQNTATLGIPVIFLTGLQSEED 60 MATSG QA+++C PDLIL+D+ MP +NG+E C +LK T T IPVIF+T EE Sbjct: 35 MATSGKQALDVCHSQQPDLILLDIEMPDMNGFEVCAKLKACTETSDIPVIFVTAHIDEET 94 Query: 61 EVKGFDAGGVDFISKPINGTVLKARVLTHLTLKLQSDFYRNIAVTDSLTGLFNRRKFDSE 120 E + F AG VDFISKPIN ++ARV THL LK QSD R + D LT ++NRR FD + Sbjct: 95 ETRCFSAGAVDFISKPINRNTVRARVKTHLLLKAQSDLLRQLVYLDGLTEVYNRRYFDEK 154 Query: 121 LAEKWELCKRSGQAMSLLMIDIDYFKKYNDHYGHQAGDHCLAEVAHAIRSNFHRSYDCVA 180 L ++W+L R+ +SL+MID+D+FKKYND YGHQAGD CL VA IR R D VA Sbjct: 155 LEQEWKLANRNSLPLSLIMIDVDFFKKYNDLYGHQAGDDCLRRVAKIIRDTLKRPTDLVA 214 Query: 181 RYGGEEFACILPMAGREQALKLARDVCDAVARLHLPHARSDASEFVTLSIGVASVDVPGH 240 RYGGEEF C+LP G A+++A + + +PH S S FV++S+GV + Sbjct: 215 RYGGEEFVCLLPNTGLVGAMEVAEAIRLQLLEQEIPHVGSTVSPFVSISLGVCCKETQS- 273 Query: 241 SSTPAALIALADQNLYQAKAHGRAQVYCATPAE 273 P L+ AD LYQAK +GR Q C P + Sbjct: 274 DGMPTTLLLQADLQLYQAKRNGRNQT-CGVPYQ 305 >ref|YP_004513870.1| response regulator receiver modulated diguanylate cyclase [Methylomonas methanica MC09] gb|AEG01371.1| response regulator receiver modulated diguanylate cyclase [Methylomonas methanica MC09] Length = 302 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 136/265 (51%), Positives = 178/265 (67%) Query: 2 ATSGLQAIELCEKVVPDLILMDVNMPGLNGYETCERLKQNTATLGIPVIFLTGLQSEEDE 61 AT G A+EL + P LIL+DV MPG++GY+ ++LKQ + +PVIF+TG +E Sbjct: 33 ATGGAMALELASQEPPSLILLDVMMPGVDGYQVLDQLKQLSQCRDVPVIFITGHDDMGNE 92 Query: 62 VKGFDAGGVDFISKPINGTVLKARVLTHLTLKLQSDFYRNIAVTDSLTGLFNRRKFDSEL 121 +G +AG VDFISKP N V++ARV THLTLK QSD R+ DSLTGL NRR+FD L Sbjct: 93 TRGLEAGAVDFISKPANPAVVRARVKTHLTLKAQSDQLRSQVFIDSLTGLANRRRFDECL 152 Query: 122 AEKWELCKRSGQAMSLLMIDIDYFKKYNDHYGHQAGDHCLAEVAHAIRSNFHRSYDCVAR 181 A +W C+R ++LL IDID+FK YND+YGH AGD CLA+VA AI F R +D VAR Sbjct: 153 ALEWLHCQRYRWPLTLLFIDIDHFKLYNDYYGHVAGDACLAKVAEAIGGQFGRPHDVVAR 212 Query: 182 YGGEEFACILPMAGREQALKLARDVCDAVARLHLPHARSDASEFVTLSIGVASVDVPGHS 241 YGGEEF C+LP + A +CDAV+ L +PH S + VT+SIG+A++ + Sbjct: 213 YGGEEFVCLLPECDMNKVRDKAHQLCDAVSELRIPHETSLTAPVVTISIGMATLTPGEDA 272 Query: 242 STPAALIALADQNLYQAKAHGRAQV 266 + P AL +LADQNLY AK+ GR ++ Sbjct: 273 NDPEALTSLADQNLYLAKSQGRNRL 297