BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4683.p (381 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777121.1| two component hybrid sensor histidine kinase... 516 e-144 gb|AEG09441.1| multi-sensor hybrid histidine kinase [Shewanella ... 174 2e-41 ref|ZP_07394436.1| multi-sensor hybrid histidine kinase [Shewane... 172 7e-41 ref|ZP_04936119.1| hypothetical protein PA2G_03563 [Pseudomonas ... 162 1e-37 ref|ZP_06876831.1| putative sensor/response regulator hybrid [Ps... 162 1e-37 >ref|YP_003777121.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65213.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1524 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 254/332 (76%), Positives = 286/332 (86%) Query: 1 MFALGGGERIRKPRQERYPSTMTRVTRNTVVFLLITLLFMLAGAATVRYLNERELHDSLA 60 MFALGGGERIRKPRQERYPSTMTRVTRNTVVFLLITLLFMLAGAATVRYLNERELHDSLA Sbjct: 1 MFALGGGERIRKPRQERYPSTMTRVTRNTVVFLLITLLFMLAGAATVRYLNERELHDSLA 60 Query: 61 LDSRWIRDDIESLLRRYEHGLRGTRGAILAIGADDLSREKLLRYMDSRDLAQEFPWAGGF 120 +DSRWI DDIESLLRRYEHGLRG RGAILAIG L+RE+LLRYMDSRDLA EFPWAGGF Sbjct: 61 VDSRWIGDDIESLLRRYEHGLRGERGAILAIGEHALTRERLLRYMDSRDLATEFPWAGGF 120 Query: 121 GFIRHVPLAALPAYEKKMREDHLLFSGIRQLADNPGDRYVIEYIEPLAPNRPALGLDIAS 180 GFIRHVPL+A AYE+++R+ +LF I QLA+NPG+ YVIEYIEP+ NR ALGLDIAS Sbjct: 121 GFIRHVPLSARAAYEQQVRQGRMLFPSITQLAENPGELYVIEYIEPIEANRKALGLDIAS 180 Query: 181 SPERRSAADHAMLTGRAELTTPIRLVQKEQRTANAYLFLLPIYAGSVTPPTMEQRQERIL 240 S RRSAADHAMLTGRAELT PI LVQK+ +ANAYLFLLPIYAGSVTPPT+ +RQE+I+ Sbjct: 181 SQARRSAADHAMLTGRAELTPPIHLVQKDGASANAYLFLLPIYAGSVTPPTLHERQEKII 240 Query: 241 GWAYAPLSVHDILSELSRRWNMHSLEILVEDVASNTTAVELFRSGGFDQIEDAVSLQTAV 300 GWAYAPLSVHDI+SELSRRW H+LE+L++D A++ VELFRS GFD + L +A+ Sbjct: 241 GWAYAPLSVHDIISELSRRWKTHALEVLIKDAAADGDNVELFRSDGFDALAQDSGLDSAL 300 Query: 301 PLYGRAWKLSIRAAPEYAQAHQFISDRATLLS 332 LYGR WKL +R + +Y Q HQF+SDRA LLS Sbjct: 301 SLYGRTWKLQLRPSTDYRQTHQFVSDRAMLLS 332 >gb|AEG09441.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] Length = 1629 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 100/272 (36%), Positives = 154/272 (56%), Gaps = 3/272 (1%) Query: 50 LNERELHDSLALDSRWIRDDIESLLRRYEHGLRGTRGAILAIGADDLSREKLLRYMDSRD 109 +N + + +L ++ I +++ + + Y++GLRG RG+IL+ G +SR RY SRD Sbjct: 35 MNAQTIGQALRENTEQISENVLNRITLYQYGLRGARGSILSAGEYGISRASFHRYSLSRD 94 Query: 110 LAQEFPWAGGFGFIRHVPLAALPAYEKKMREDHLLFSGIRQLADNPGDRYVIEYIEPLAP 169 + QEFP A GFGFIR VP + A+ + + D IRQL + G++YVIEYIEP+ Sbjct: 95 VDQEFPGARGFGFIRRVPNSDEAAFLTRAKNDDWPDFNIRQLTPHSGEKYVIEYIEPIDR 154 Query: 170 NRPALGLDIASSPERRSAADHAMLTGRAELTTPIRLVQKEQRTANAYLFLLPIYAGSVTP 229 NR A+GLD+AS R++AAD AML+G L+ PI LVQ ++ ++L L PIY P Sbjct: 155 NRAAIGLDVASEAHRKAAADAAMLSGEVRLSAPITLVQATRKPLQSFLILQPIYRTISVP 214 Query: 230 PTMEQRQERILGWAYAPLSVHDILSELSRRWNMHSLEILVEDVASNTTAVELFRSGGFDQ 289 T ++R GW+YAPL +++L+ L+ M L L+ D+ + F + D Sbjct: 215 KTPQERLAAGYGWSYAPLVTNEVLTGLALNQKMTKL--LLSDITQTERPISFFETHPDDA 272 Query: 290 IE-DAVSLQTAVPLYGRAWKLSIRAAPEYAQA 320 A S ++GR W++ + A P + Q+ Sbjct: 273 SPLSAYSHTLTKEIFGRKWQVEVIAYPAFIQS 304 >ref|ZP_07394436.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gb|EFM13217.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] Length = 1629 Score = 172 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 100/272 (36%), Positives = 152/272 (55%), Gaps = 3/272 (1%) Query: 50 LNERELHDSLALDSRWIRDDIESLLRRYEHGLRGTRGAILAIGADDLSREKLLRYMDSRD 109 +N + + +L ++ I +++ + + Y++GLRG RG+IL G +SR RY SRD Sbjct: 35 MNAQTIGQALRENTEQISENVLNRITLYQYGLRGARGSILTAGEYGISRASFHRYSLSRD 94 Query: 110 LAQEFPWAGGFGFIRHVPLAALPAYEKKMREDHLLFSGIRQLADNPGDRYVIEYIEPLAP 169 + QEFP A GFGFIR VP + A+ + + D IRQL + G++YVIEYIEP+ Sbjct: 95 VDQEFPGARGFGFIRRVPNSDEAAFLTRAKNDDWPDFNIRQLTPHSGEKYVIEYIEPIDR 154 Query: 170 NRPALGLDIASSPERRSAADHAMLTGRAELTTPIRLVQKEQRTANAYLFLLPIYAGSVTP 229 NR A+GLD+AS R++AAD AML+G L+ PI LVQ + ++L L PIY P Sbjct: 155 NRAAIGLDVASEAHRKAAADAAMLSGEVRLSAPITLVQATGKPLQSFLILQPIYRTISVP 214 Query: 230 PTMEQRQERILGWAYAPLSVHDILSELSRRWNMHSLEILVEDVASNTTAVELFRSGGFDQ 289 T ++R GW+YAPL +++L+ L+ M L L+ D+ + F + D Sbjct: 215 KTPQERLAAGYGWSYAPLVTNEVLTGLALNQKMTKL--LLSDITQTERPISFFETHPDDA 272 Query: 290 IE-DAVSLQTAVPLYGRAWKLSIRAAPEYAQA 320 A S ++GR W++ + A P + Q+ Sbjct: 273 SPLSAYSHTLTKEIFGRKWQVEVIAYPAFIQS 304 >ref|ZP_04936119.1| hypothetical protein PA2G_03563 [Pseudomonas aeruginosa 2192] gb|EAZ60238.1| hypothetical protein PA2G_03563 [Pseudomonas aeruginosa 2192] Length = 1417 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 103/283 (36%), Positives = 153/283 (54%), Gaps = 2/283 (0%) Query: 50 LNERELHDSLALDSRWIRDDIESLLRRYEHGLRGTRGAILAIGADDLSREKLLRYMDSRD 109 +NE++ +L ++ + + + + Y++GLRG RGA+L G + RE RY +RD Sbjct: 35 VNEQQARMALEREAELLAEAVTRRVELYQYGLRGVRGALLTAGEAHIDRELFRRYSLTRD 94 Query: 110 LAQEFPWAGGFGFIRHVPLAALPAYEKKMREDHLLFSGIRQLADNPGDRYVIEYIEPLAP 169 + +EFP A GFGFIR V A + ++ R D I+QL + G+RYVI+YIEP+A Sbjct: 95 IDREFPGARGFGFIRRVAAADEAGFLRQARADGQPEFRIQQLTPHDGERYVIQYIEPVAR 154 Query: 170 NRPALGLDIASSPERRSAADHAMLTGRAELTTPIRLVQKEQRTANAYLFLLPIYAGSVTP 229 N ALGLDIAS RR AA A+ TG+ LT PI LVQ ++L L+PIY +TP Sbjct: 155 NGQALGLDIASEANRREAARAALETGQVRLTGPITLVQASGLRQQSFLILMPIYRSGITP 214 Query: 230 PTMEQRQERILGWAYAPLSVHDILSELSRRWNMHSLEILVEDVASNTTAVELFRSGGFDQ 289 P QR+ GW+YAPL ++L+ L + ++ + + DV + AV F +G Sbjct: 215 PPGPQRELEGFGWSYAPLLTGEVLAGLP--IDNAAIHLELSDVTGDGAAVPFFVNGAAAP 272 Query: 290 IEDAVSLQTAVPLYGRAWKLSIRAAPEYAQAHQFISDRATLLS 332 + +YGR W+++ A P + Q S R L+ Sbjct: 273 AQRLFGHMLRREIYGRHWQMAFSALPLFVQRLHQPSPRILFLA 315 >ref|ZP_06876831.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa PAb1] Length = 1417 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 103/283 (36%), Positives = 153/283 (54%), Gaps = 2/283 (0%) Query: 50 LNERELHDSLALDSRWIRDDIESLLRRYEHGLRGTRGAILAIGADDLSREKLLRYMDSRD 109 +NE++ +L ++ + + + + Y++GLRG RGA+L G + RE RY +RD Sbjct: 35 VNEQQARMALEREAELLAEAVTRRVELYQYGLRGVRGALLTAGEAHIDRELFRRYSLTRD 94 Query: 110 LAQEFPWAGGFGFIRHVPLAALPAYEKKMREDHLLFSGIRQLADNPGDRYVIEYIEPLAP 169 + +EFP A GFGFIR V A + ++ R D I+QL + G+RYVI+YIEP+A Sbjct: 95 IDREFPGARGFGFIRRVAAADEAGFLRQARADGQPEFRIQQLTPHDGERYVIQYIEPVAR 154 Query: 170 NRPALGLDIASSPERRSAADHAMLTGRAELTTPIRLVQKEQRTANAYLFLLPIYAGSVTP 229 N ALGLDIAS RR AA A+ TG+ LT PI LVQ ++L L+PIY +TP Sbjct: 155 NGQALGLDIASEANRREAARAALETGQVRLTGPITLVQASGLRQQSFLILMPIYRSGITP 214 Query: 230 PTMEQRQERILGWAYAPLSVHDILSELSRRWNMHSLEILVEDVASNTTAVELFRSGGFDQ 289 P QR+ GW+YAPL ++L+ L + ++ + + DV + AV F +G Sbjct: 215 PPGPQRELEGFGWSYAPLLTGEVLAGLP--IDNAAIHLELSDVTGDGAAVPFFVNGAAAP 272 Query: 290 IEDAVSLQTAVPLYGRAWKLSIRAAPEYAQAHQFISDRATLLS 332 + +YGR W+++ A P + Q S R L+ Sbjct: 273 AQRLFGHMLRREIYGRHWQMAFSALPLFVQRLHQPSPRILFLA 315